PI0026902 (gene) Melon (PI 482460) v1

Overview
NamePI0026902
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr07: 11825705 .. 11826549 (+)
RNA-Seq ExpressionPI0026902
SyntenyPI0026902
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACAATAATAGAAATGCCCCTCCACCGCAAGCTGCCCAAGAACCAAACGCCGCCTACATGGCACATGACTTGGACAGGCCAATTAGGTCATATACGGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCTGTGTTCGGTGAAAATGCAAGGTTTGAAATCAAGCCTGTAATGCTTCAAATGATTCAGAGTGCCGGACAATTTGGCGGTCACCCTAGAGAAGATCCACACGAGCACATTAGAAGTTTCTATTCTATCTGTGCTTCCTTCCATATGTCAGGCATCTCACCTGAAGAACTGAGATTCGCCCTCTTCCTGTTAACTCTGAGGATGAAGCGAAGAGGTGGGCCAATGCCTTGGAGGATGGCGAGGTGGGAACATGGGATCAATTGATAGAGAAATTTATGAGGAAATTCTTCCCACCTCATGAGAATGCCAGAAGAAGGAAGGAGCTCATGAGCTTCCAGCAAAAAGATAGAGAAAACCTACATGATGCGTAGAGTAGGTTCAAGAGGATGGTTAAAGCATGCCCCCACAATGGCATTCCCGAGTGCATATTGATGGAGGTCTTCTATTTTGGTTTGAACAAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGTGGTATGTTAAAAAGCTCCTACAACCAGATTAAGGCAATGCTGGACACAATGGCCAGCAATAATGAAGAATGGGATGAAGATGATTTCGACAATCGCCGAGGAGGACGAGGAAGAAGCGAAGAAGGTATGGATAAGAACGCTGTGGTGGCGTTGCAGGGACAAATGATTGCGATGAACAATCTGCTCAAATCTATGGAAATAACGTAA

mRNA sequence

ATGGAAAACAATAATAGAAATGCCCCTCCACCGCAAGCTGCCCAAGAACCAAACGCCGCCTACATGGCACATGACTTGGACAGGCCAATTAGGTCATATACGGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCTGTGTTCGGTGAAAATGCAAGGTTTGAAATCAAGCCTGTAATGCTTCAAATGATTCAGAGTGCCGGACAATTTGGCGGTCACCCTAGAGAAGATCCACACGAGCACATTAGAAGTTTCTATTCTATCTGTGCTTCCTTCCATATGTCAGGCATCTCACCTGAAGAACTGAGATTCGCCCTCTTCCTGTTAACTCTGAGGATGAAGCGAAGAGGTGGGCCAATGCCTTGGAGGATGGCGAGGTTCAAGAGGATGGTTAAAGCATGCCCCCACAATGGCATTCCCGAGTGCATATTGATGGAGGTCTTCTATTTTGGTTTGAACAAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGTGGTATGTTAAAAAGCTCCTACAACCAGATTAAGGCAATGCTGGACACAATGGCCAGCAATAATGAAGAATGGGATGAAGATGATTTCGACAATCGCCGAGGAGGACGAGGAAGAAGCGAAGAAGGTATGGATAAGAACGCTGTGGTGGCGTTGCAGGGACAAATGATTGCGATGAACAATCTGCTCAAATCTATGGAAATAACGTAA

Coding sequence (CDS)

ATGGAAAACAATAATAGAAATGCCCCTCCACCGCAAGCTGCCCAAGAACCAAACGCCGCCTACATGGCACATGACTTGGACAGGCCAATTAGGTCATATACGGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCTGTGTTCGGTGAAAATGCAAGGTTTGAAATCAAGCCTGTAATGCTTCAAATGATTCAGAGTGCCGGACAATTTGGCGGTCACCCTAGAGAAGATCCACACGAGCACATTAGAAGTTTCTATTCTATCTGTGCTTCCTTCCATATGTCAGGCATCTCACCTGAAGAACTGAGATTCGCCCTCTTCCTGTTAACTCTGAGGATGAAGCGAAGAGGTGGGCCAATGCCTTGGAGGATGGCGAGGTTCAAGAGGATGGTTAAAGCATGCCCCCACAATGGCATTCCCGAGTGCATATTGATGGAGGTCTTCTATTTTGGTTTGAACAAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGTGGTATGTTAAAAAGCTCCTACAACCAGATTAAGGCAATGCTGGACACAATGGCCAGCAATAATGAAGAATGGGATGAAGATGATTTCGACAATCGCCGAGGAGGACGAGGAAGAAGCGAAGAAGGTATGGATAAGAACGCTGTGGTGGCGTTGCAGGGACAAATGATTGCGATGAACAATCTGCTCAAATCTATGGAAATAACGTAA

Protein sequence

MENNNRNAPPPQAAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQSAGQFGGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLLTLRMKRRGGPMPWRMARFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMASNNEEWDEDDFDNRRGGRGRSEEGMDKNAVVALQGQMIAMNNLLKSMEIT
Homology
BLAST of PI0026902 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.3e-35
Identity = 76/108 (70.37%), Postives = 86/108 (79.63%), Query Frame = 0

Query: 4   NNRNAPPPQAAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVML 63
           NN+  P  QAAQ  N  Y+A D DRPIRSY +PNLY+FNPGIAYP F EN RFEIK VML
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 64  QMIQSAGQFGGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLL 112
           Q+IQ+AGQF  HPR+DPH++IR+FYSICASFHM GIS EELRF  F L
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

BLAST of PI0026902 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 99/269 (36.80%), Postives = 132/269 (49.07%), Query Frame = 0

Query: 13  AAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQSAGQF 72
           A Q  N   +A D  R IR Y AP     NPGI  P   +  +FE+KPVM QM+Q+ GQF
Sbjct: 6   AQQIVNPIILADDRARAIREYAAPMFNELNPGIVRPEI-QAPQFELKPVMFQMLQTVGQF 65

Query: 73  GGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLLTLRMKRRG--GPMP------W 132
            G P EDPH H+RSF  +  SF + G+S E LR  LF  +LR + R     +P      W
Sbjct: 66  SGMPTEDPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTLPPDSVTNW 125

Query: 133 R-------------------------------------MARFKRMVKACPHNGIPECILM 192
                                                   RFK +++ CPH+GIP CI M
Sbjct: 126 NDLAEKFLRKYFPPTRNAKFRSEIMSFQQLEDESTSDAWERFKELLRKCPHHGIPHCIQM 185

Query: 193 EVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMASNNEEWDEDDFDNRRGGRGRS 236
           E FY GLN A++   DA   G +L  SYN+   +L+T+ASNN +W      N R    R 
Sbjct: 186 ETFYNGLNAASRMVLDASANGAILSKSYNEAFEILETIASNNYQW-----SNTRAPTSRK 245

BLAST of PI0026902 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.1e-32
Identity = 71/110 (64.55%), Postives = 93/110 (84.55%), Query Frame = 0

Query: 127 ARFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMA 186
           +RFKR+VKACP +GIPEC+ MEVFYFGL+K T Q  + +FVGGML+SSYNQIKA LD+M+
Sbjct: 16  SRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMS 75

Query: 187 SNNEEWDEDDFDNRRGGRGRSEEGMDKNAVVALQGQMIAMNNLLKSMEIT 237
           +N++EWD+  F +R   RGR++EG+DK+ VV LQGQMIAMNNLL+SM ++
Sbjct: 76  NNSQEWDDIGFGSRH--RGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLS 123

BLAST of PI0026902 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.0e-30
Identity = 66/97 (68.04%), Postives = 78/97 (80.41%), Query Frame = 0

Query: 4   NNRNAPPPQAAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVML 63
           NN+N P  Q  QE N AY+AHDLD+PI+SY +PNLY+FNPGIAY  FGEN  FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 64  QMIQSAGQFGGHPREDPHEHIRSFYSICASFHMSGIS 101
            M Q+AGQFGGHP EDP++HIR+FY ICASF+M  IS
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98

BLAST of PI0026902 vs. ExPASy TrEMBL
Match: A0A5A7V1F3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002850 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 8.5e-30
Identity = 82/185 (44.32%), Postives = 110/185 (59.46%), Query Frame = 0

Query: 10  PPQAAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQSA 69
           P   A      Y+AH+L RPIRSY  P+LY FNPGIAYP FGENA +E K    +   S 
Sbjct: 6   PVNQAIHVATTYLAHNLHRPIRSYALPSLYEFNPGIAYPEFGENAHYESKDDAKRWANSM 65

Query: 70  GQFGGHPREDPHEHIRSFYSICASF---HMSGISPEELRFALFLLTLRMKRRGGPMPWRM 129
                      H  + ++  +   F       I   + R  L L   R  R+     W +
Sbjct: 66  ----------EHGEVTTWEDLIEKFMKKFFPTIKIAKRRQDLILFKQR-DRKNLHDAWSI 125

Query: 130 ARFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMA 189
             FKRMVKAC H+GI + +LME FYFGL+K T+Q+AD++F+GG+L+SSYNQIKAMLD+MA
Sbjct: 126 --FKRMVKACLHHGITKYVLMEGFYFGLSKDTRQSADSLFIGGILRSSYNQIKAMLDSMA 177

Query: 190 SNNEE 192
           +N+++
Sbjct: 186 NNSQD 177

BLAST of PI0026902 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 175.3 bits (443), Expect = 6.4e-40
Identity = 94/232 (40.52%), Postives = 124/232 (53.45%), Query Frame = 0

Query: 5   NRNAPPPQAAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVMLQ 64
           N NA    A  + N   +AHD +RP+R Y +PNLYNF PGI  P F  N RFE+KPVMLQ
Sbjct: 57  NANA-QEHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQ 116

Query: 65  MIQSAGQFGGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLLTLRMKRR------ 124
           M+Q+AGQFGG   EDPH H++SF  IC++F M+G+  + +R  LF  +LR + R      
Sbjct: 117 MLQAAGQFGGATGEDPHAHLKSFLEICSAFPMAGVPQDSIRLTLFPFSLRDEARQWAYSF 176

Query: 125 --GGPMPW-------------------------------------RMARFKRMVKACPHN 184
             G    W                                        RFKR+V+ CPHN
Sbjct: 177 EPGEITTWGKMVEKFMQKYFPPTVSAKRRRDIVTFEQKDSETFSEAWTRFKRLVRNCPHN 236

Query: 185 GIPECILMEVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMASNNEE 192
           GIP C+ ME+FY GLNK +Q  ADA   GG++  +Y Q K +LD ++ N  +
Sbjct: 237 GIPNCVQMEIFYGGLNKTSQSMADASAAGGLMDKTYTQAKEILDRISRNTNQ 287

BLAST of PI0026902 vs. NCBI nr
Match: XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 9.6e-36
Identity = 101/283 (35.69%), Postives = 148/283 (52.30%), Query Frame = 0

Query: 2   ENNNRNAPP-PQAAQEP--NAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEI 61
           +NNN  AP   Q    P  +  ++A D + PIR+Y APNLY+F+PGI+ P+  ENARFEI
Sbjct: 37  DNNNNEAPEGNQGVNRPVQDPVFLAADHNIPIRNYAAPNLYDFSPGISRPIVEENARFEI 96

Query: 62  KPVMLQMIQSAGQFGGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLLTLRMKRR 121
           KPVM+QMIQ+  QF     E+PH H+  F  +C++F + GI+P  +R  LF  TLR K +
Sbjct: 97  KPVMVQMIQNMRQFESLQCENPHAHLTIFVEMCSTFSIPGITPVGIRLYLFPYTLRDKAK 156

Query: 122 GGP--------------MPWRM-------------------------------ARFKRMV 181
                            + W M                                RF+R+V
Sbjct: 157 RWAHSLEANEITSSDQLVEWFMKKFFPPAINTRRRKNVLNFEKMDNETLSTAWVRFRRLV 216

Query: 182 KACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMASNNEEWD 236
           K CPH GI +C+LME+FY GLN++TQ  ADA  V   +  +Y + K +LD ++ N ++W 
Sbjct: 217 KNCPHIGILDCVLMEMFYNGLNRSTQAVADASAVERFMDKTYTKAKVILDRISWNMDDWV 276

BLAST of PI0026902 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 4.8e-35
Identity = 76/108 (70.37%), Postives = 86/108 (79.63%), Query Frame = 0

Query: 4   NNRNAPPPQAAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVML 63
           NN+  P  QAAQ  N  Y+A D DRPIRSY +PNLY+FNPGIAYP F EN RFEIK VML
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 64  QMIQSAGQFGGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLL 112
           Q+IQ+AGQF  HPR+DPH++IR+FYSICASFHM GIS EELRF  F L
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

BLAST of PI0026902 vs. NCBI nr
Match: ERM93404.1 (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 156.8 bits (395), Expect = 2.4e-34
Identity = 99/269 (36.80%), Postives = 132/269 (49.07%), Query Frame = 0

Query: 13  AAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQSAGQF 72
           A Q  N   +A D  R IR Y AP     NPGI  P   +  +FE+KPVM QM+Q+ GQF
Sbjct: 6   AQQIVNPIILADDRARAIREYAAPMFNELNPGIVRPEI-QAPQFELKPVMFQMLQTVGQF 65

Query: 73  GGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLLTLRMKRRG--GPMP------W 132
            G P EDPH H+RSF  +  SF + G+S E LR  LF  +LR + R     +P      W
Sbjct: 66  SGMPTEDPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTLPPDSVTNW 125

Query: 133 R-------------------------------------MARFKRMVKACPHNGIPECILM 192
                                                   RFK +++ CPH+GIP CI M
Sbjct: 126 NDLAEKFLRKYFPPTRNAKFRSEIMSFQQLEDESTSDAWERFKELLRKCPHHGIPHCIQM 185

Query: 193 EVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMASNNEEWDEDDFDNRRGGRGRS 236
           E FY GLN A++   DA   G +L  SYN+   +L+T+ASNN +W      N R    R 
Sbjct: 186 ETFYNGLNAASRMVLDASANGAILSKSYNEAFEILETIASNNYQW-----SNTRAPTSRK 245

BLAST of PI0026902 vs. NCBI nr
Match: XP_030497803.1 (uncharacterized protein LOC115713460 [Cannabis sativa])

HSP 1 Score: 156.0 bits (393), Expect = 4.0e-34
Identity = 98/269 (36.43%), Postives = 130/269 (48.33%), Query Frame = 0

Query: 13  AAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQSAGQF 72
           A  E N   +A D  R IR Y AP     NPGI  P   +   FE+KPVM QM+Q+ GQF
Sbjct: 10  AHNEANPIALADDRTRAIREYAAPMFNELNPGIVRPEI-QAPHFELKPVMFQMLQTVGQF 69

Query: 73  GGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLLTLRMKRRG--GPMP------W 132
           GG P EDPH HIRSF  +  SF + G+S E LR  LF  +LR + R     +P      W
Sbjct: 70  GGSPTEDPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARAWLNTLPPDSVTNW 129

Query: 133 R-------------------------------------MARFKRMVKACPHNGIPECILM 192
                                                   RFK +++ CPH+GIP CI +
Sbjct: 130 NDLAEKFLRKYFPPTRNAKFRSEIMSFQQSEDETTSDAWERFKELLRKCPHHGIPHCIQL 189

Query: 193 EVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMASNNEEWDEDDFDNRRGGRGRS 236
           E FY GLN A++   DA   G +L  SYN+   +L+ +ASNN +W        R    R 
Sbjct: 190 ETFYNGLNAASRMVLDASANGAILSKSYNEAFEILERIASNNYQW-----STNRAHTSRK 249

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2U72.3e-3570.37Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
U5CUI21.1e-3436.80Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... [more]
A0A0A0K6F99.1e-3264.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1[more]
A0A5A7UDN81.0e-3068.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V1F38.5e-3044.32Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
WP_217833177.16.4e-4040.52retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
XP_038887458.19.6e-3635.69uncharacterized protein LOC120077591 [Benincasa hispida][more]
KAA0062403.14.8e-3570.37putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
ERM93404.12.4e-3436.80hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda][more]
XP_030497803.14.0e-3436.43uncharacterized protein LOC115713460 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0026902.1PI0026902.1mRNA