Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACAATAATAGAAATGCCCCTCCACCGCAAGCTGCCCAAGAACCAAACGCCGCCTACATGGCACATGACTTGGACAGGCCAATTAGGTCATATACGGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCTGTGTTCGGTGAAAATGCAAGGTTTGAAATCAAGCCTGTAATGCTTCAAATGATTCAGAGTGCCGGACAATTTGGCGGTCACCCTAGAGAAGATCCACACGAGCACATTAGAAGTTTCTATTCTATCTGTGCTTCCTTCCATATGTCAGGCATCTCACCTGAAGAACTGAGATTCGCCCTCTTCCTGTTAACTCTGAGGATGAAGCGAAGAGGTGGGCCAATGCCTTGGAGGATGGCGAGGTGGGAACATGGGATCAATTGATAGAGAAATTTATGAGGAAATTCTTCCCACCTCATGAGAATGCCAGAAGAAGGAAGGAGCTCATGAGCTTCCAGCAAAAAGATAGAGAAAACCTACATGATGCGTAGAGTAGGTTCAAGAGGATGGTTAAAGCATGCCCCCACAATGGCATTCCCGAGTGCATATTGATGGAGGTCTTCTATTTTGGTTTGAACAAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGTGGTATGTTAAAAAGCTCCTACAACCAGATTAAGGCAATGCTGGACACAATGGCCAGCAATAATGAAGAATGGGATGAAGATGATTTCGACAATCGCCGAGGAGGACGAGGAAGAAGCGAAGAAGGTATGGATAAGAACGCTGTGGTGGCGTTGCAGGGACAAATGATTGCGATGAACAATCTGCTCAAATCTATGGAAATAACGTAA
mRNA sequence
ATGGAAAACAATAATAGAAATGCCCCTCCACCGCAAGCTGCCCAAGAACCAAACGCCGCCTACATGGCACATGACTTGGACAGGCCAATTAGGTCATATACGGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCTGTGTTCGGTGAAAATGCAAGGTTTGAAATCAAGCCTGTAATGCTTCAAATGATTCAGAGTGCCGGACAATTTGGCGGTCACCCTAGAGAAGATCCACACGAGCACATTAGAAGTTTCTATTCTATCTGTGCTTCCTTCCATATGTCAGGCATCTCACCTGAAGAACTGAGATTCGCCCTCTTCCTGTTAACTCTGAGGATGAAGCGAAGAGGTGGGCCAATGCCTTGGAGGATGGCGAGGTTCAAGAGGATGGTTAAAGCATGCCCCCACAATGGCATTCCCGAGTGCATATTGATGGAGGTCTTCTATTTTGGTTTGAACAAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGTGGTATGTTAAAAAGCTCCTACAACCAGATTAAGGCAATGCTGGACACAATGGCCAGCAATAATGAAGAATGGGATGAAGATGATTTCGACAATCGCCGAGGAGGACGAGGAAGAAGCGAAGAAGGTATGGATAAGAACGCTGTGGTGGCGTTGCAGGGACAAATGATTGCGATGAACAATCTGCTCAAATCTATGGAAATAACGTAA
Coding sequence (CDS)
ATGGAAAACAATAATAGAAATGCCCCTCCACCGCAAGCTGCCCAAGAACCAAACGCCGCCTACATGGCACATGACTTGGACAGGCCAATTAGGTCATATACGGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCTGTGTTCGGTGAAAATGCAAGGTTTGAAATCAAGCCTGTAATGCTTCAAATGATTCAGAGTGCCGGACAATTTGGCGGTCACCCTAGAGAAGATCCACACGAGCACATTAGAAGTTTCTATTCTATCTGTGCTTCCTTCCATATGTCAGGCATCTCACCTGAAGAACTGAGATTCGCCCTCTTCCTGTTAACTCTGAGGATGAAGCGAAGAGGTGGGCCAATGCCTTGGAGGATGGCGAGGTTCAAGAGGATGGTTAAAGCATGCCCCCACAATGGCATTCCCGAGTGCATATTGATGGAGGTCTTCTATTTTGGTTTGAACAAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGTGGTATGTTAAAAAGCTCCTACAACCAGATTAAGGCAATGCTGGACACAATGGCCAGCAATAATGAAGAATGGGATGAAGATGATTTCGACAATCGCCGAGGAGGACGAGGAAGAAGCGAAGAAGGTATGGATAAGAACGCTGTGGTGGCGTTGCAGGGACAAATGATTGCGATGAACAATCTGCTCAAATCTATGGAAATAACGTAA
Protein sequence
MENNNRNAPPPQAAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQSAGQFGGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLLTLRMKRRGGPMPWRMARFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMASNNEEWDEDDFDNRRGGRGRSEEGMDKNAVVALQGQMIAMNNLLKSMEIT
Homology
BLAST of PI0026902 vs. ExPASy TrEMBL
Match:
A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)
HSP 1 Score: 159.1 bits (401), Expect = 2.3e-35
Identity = 76/108 (70.37%), Postives = 86/108 (79.63%), Query Frame = 0
Query: 4 NNRNAPPPQAAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVML 63
NN+ P QAAQ N Y+A D DRPIRSY +PNLY+FNPGIAYP F EN RFEIK VML
Sbjct: 5 NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64
Query: 64 QMIQSAGQFGGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLL 112
Q+IQ+AGQF HPR+DPH++IR+FYSICASFHM GIS EELRF F L
Sbjct: 65 QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112
BLAST of PI0026902 vs. ExPASy TrEMBL
Match:
U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)
HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 99/269 (36.80%), Postives = 132/269 (49.07%), Query Frame = 0
Query: 13 AAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQSAGQF 72
A Q N +A D R IR Y AP NPGI P + +FE+KPVM QM+Q+ GQF
Sbjct: 6 AQQIVNPIILADDRARAIREYAAPMFNELNPGIVRPEI-QAPQFELKPVMFQMLQTVGQF 65
Query: 73 GGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLLTLRMKRRG--GPMP------W 132
G P EDPH H+RSF + SF + G+S E LR LF +LR + R +P W
Sbjct: 66 SGMPTEDPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTLPPDSVTNW 125
Query: 133 R-------------------------------------MARFKRMVKACPHNGIPECILM 192
RFK +++ CPH+GIP CI M
Sbjct: 126 NDLAEKFLRKYFPPTRNAKFRSEIMSFQQLEDESTSDAWERFKELLRKCPHHGIPHCIQM 185
Query: 193 EVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMASNNEEWDEDDFDNRRGGRGRS 236
E FY GLN A++ DA G +L SYN+ +L+T+ASNN +W N R R
Sbjct: 186 ETFYNGLNAASRMVLDASANGAILSKSYNEAFEILETIASNNYQW-----SNTRAPTSRK 245
BLAST of PI0026902 vs. ExPASy TrEMBL
Match:
A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)
HSP 1 Score: 147.1 bits (370), Expect = 9.1e-32
Identity = 71/110 (64.55%), Postives = 93/110 (84.55%), Query Frame = 0
Query: 127 ARFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMA 186
+RFKR+VKACP +GIPEC+ MEVFYFGL+K T Q + +FVGGML+SSYNQIKA LD+M+
Sbjct: 16 SRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMS 75
Query: 187 SNNEEWDEDDFDNRRGGRGRSEEGMDKNAVVALQGQMIAMNNLLKSMEIT 237
+N++EWD+ F +R RGR++EG+DK+ VV LQGQMIAMNNLL+SM ++
Sbjct: 76 NNSQEWDDIGFGSRH--RGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLS 123
BLAST of PI0026902 vs. ExPASy TrEMBL
Match:
A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)
HSP 1 Score: 143.7 bits (361), Expect = 1.0e-30
Identity = 66/97 (68.04%), Postives = 78/97 (80.41%), Query Frame = 0
Query: 4 NNRNAPPPQAAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVML 63
NN+N P Q QE N AY+AHDLD+PI+SY +PNLY+FNPGIAY FGEN FEIK +ML
Sbjct: 2 NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61
Query: 64 QMIQSAGQFGGHPREDPHEHIRSFYSICASFHMSGIS 101
M Q+AGQFGGHP EDP++HIR+FY ICASF+M IS
Sbjct: 62 YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98
BLAST of PI0026902 vs. ExPASy TrEMBL
Match:
A0A5A7V1F3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002850 PE=4 SV=1)
HSP 1 Score: 140.6 bits (353), Expect = 8.5e-30
Identity = 82/185 (44.32%), Postives = 110/185 (59.46%), Query Frame = 0
Query: 10 PPQAAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQSA 69
P A Y+AH+L RPIRSY P+LY FNPGIAYP FGENA +E K + S
Sbjct: 6 PVNQAIHVATTYLAHNLHRPIRSYALPSLYEFNPGIAYPEFGENAHYESKDDAKRWANSM 65
Query: 70 GQFGGHPREDPHEHIRSFYSICASF---HMSGISPEELRFALFLLTLRMKRRGGPMPWRM 129
H + ++ + F I + R L L R R+ W +
Sbjct: 66 ----------EHGEVTTWEDLIEKFMKKFFPTIKIAKRRQDLILFKQR-DRKNLHDAWSI 125
Query: 130 ARFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMA 189
FKRMVKAC H+GI + +LME FYFGL+K T+Q+AD++F+GG+L+SSYNQIKAMLD+MA
Sbjct: 126 --FKRMVKACLHHGITKYVLMEGFYFGLSKDTRQSADSLFIGGILRSSYNQIKAMLDSMA 177
Query: 190 SNNEE 192
+N+++
Sbjct: 186 NNSQD 177
BLAST of PI0026902 vs. NCBI nr
Match:
WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])
HSP 1 Score: 175.3 bits (443), Expect = 6.4e-40
Identity = 94/232 (40.52%), Postives = 124/232 (53.45%), Query Frame = 0
Query: 5 NRNAPPPQAAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVMLQ 64
N NA A + N +AHD +RP+R Y +PNLYNF PGI P F N RFE+KPVMLQ
Sbjct: 57 NANA-QEHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQ 116
Query: 65 MIQSAGQFGGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLLTLRMKRR------ 124
M+Q+AGQFGG EDPH H++SF IC++F M+G+ + +R LF +LR + R
Sbjct: 117 MLQAAGQFGGATGEDPHAHLKSFLEICSAFPMAGVPQDSIRLTLFPFSLRDEARQWAYSF 176
Query: 125 --GGPMPW-------------------------------------RMARFKRMVKACPHN 184
G W RFKR+V+ CPHN
Sbjct: 177 EPGEITTWGKMVEKFMQKYFPPTVSAKRRRDIVTFEQKDSETFSEAWTRFKRLVRNCPHN 236
Query: 185 GIPECILMEVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMASNNEE 192
GIP C+ ME+FY GLNK +Q ADA GG++ +Y Q K +LD ++ N +
Sbjct: 237 GIPNCVQMEIFYGGLNKTSQSMADASAAGGLMDKTYTQAKEILDRISRNTNQ 287
BLAST of PI0026902 vs. NCBI nr
Match:
XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])
HSP 1 Score: 161.4 bits (407), Expect = 9.6e-36
Identity = 101/283 (35.69%), Postives = 148/283 (52.30%), Query Frame = 0
Query: 2 ENNNRNAPP-PQAAQEP--NAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEI 61
+NNN AP Q P + ++A D + PIR+Y APNLY+F+PGI+ P+ ENARFEI
Sbjct: 37 DNNNNEAPEGNQGVNRPVQDPVFLAADHNIPIRNYAAPNLYDFSPGISRPIVEENARFEI 96
Query: 62 KPVMLQMIQSAGQFGGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLLTLRMKRR 121
KPVM+QMIQ+ QF E+PH H+ F +C++F + GI+P +R LF TLR K +
Sbjct: 97 KPVMVQMIQNMRQFESLQCENPHAHLTIFVEMCSTFSIPGITPVGIRLYLFPYTLRDKAK 156
Query: 122 GGP--------------MPWRM-------------------------------ARFKRMV 181
+ W M RF+R+V
Sbjct: 157 RWAHSLEANEITSSDQLVEWFMKKFFPPAINTRRRKNVLNFEKMDNETLSTAWVRFRRLV 216
Query: 182 KACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMASNNEEWD 236
K CPH GI +C+LME+FY GLN++TQ ADA V + +Y + K +LD ++ N ++W
Sbjct: 217 KNCPHIGILDCVLMEMFYNGLNRSTQAVADASAVERFMDKTYTKAKVILDRISWNMDDWV 276
BLAST of PI0026902 vs. NCBI nr
Match:
KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])
HSP 1 Score: 159.1 bits (401), Expect = 4.8e-35
Identity = 76/108 (70.37%), Postives = 86/108 (79.63%), Query Frame = 0
Query: 4 NNRNAPPPQAAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVML 63
NN+ P QAAQ N Y+A D DRPIRSY +PNLY+FNPGIAYP F EN RFEIK VML
Sbjct: 5 NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64
Query: 64 QMIQSAGQFGGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLL 112
Q+IQ+AGQF HPR+DPH++IR+FYSICASFHM GIS EELRF F L
Sbjct: 65 QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112
BLAST of PI0026902 vs. NCBI nr
Match:
ERM93404.1 (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])
HSP 1 Score: 156.8 bits (395), Expect = 2.4e-34
Identity = 99/269 (36.80%), Postives = 132/269 (49.07%), Query Frame = 0
Query: 13 AAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQSAGQF 72
A Q N +A D R IR Y AP NPGI P + +FE+KPVM QM+Q+ GQF
Sbjct: 6 AQQIVNPIILADDRARAIREYAAPMFNELNPGIVRPEI-QAPQFELKPVMFQMLQTVGQF 65
Query: 73 GGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLLTLRMKRRG--GPMP------W 132
G P EDPH H+RSF + SF + G+S E LR LF +LR + R +P W
Sbjct: 66 SGMPTEDPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTLPPDSVTNW 125
Query: 133 R-------------------------------------MARFKRMVKACPHNGIPECILM 192
RFK +++ CPH+GIP CI M
Sbjct: 126 NDLAEKFLRKYFPPTRNAKFRSEIMSFQQLEDESTSDAWERFKELLRKCPHHGIPHCIQM 185
Query: 193 EVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMASNNEEWDEDDFDNRRGGRGRS 236
E FY GLN A++ DA G +L SYN+ +L+T+ASNN +W N R R
Sbjct: 186 ETFYNGLNAASRMVLDASANGAILSKSYNEAFEILETIASNNYQW-----SNTRAPTSRK 245
BLAST of PI0026902 vs. NCBI nr
Match:
XP_030497803.1 (uncharacterized protein LOC115713460 [Cannabis sativa])
HSP 1 Score: 156.0 bits (393), Expect = 4.0e-34
Identity = 98/269 (36.43%), Postives = 130/269 (48.33%), Query Frame = 0
Query: 13 AAQEPNAAYMAHDLDRPIRSYTAPNLYNFNPGIAYPVFGENARFEIKPVMLQMIQSAGQF 72
A E N +A D R IR Y AP NPGI P + FE+KPVM QM+Q+ GQF
Sbjct: 10 AHNEANPIALADDRTRAIREYAAPMFNELNPGIVRPEI-QAPHFELKPVMFQMLQTVGQF 69
Query: 73 GGHPREDPHEHIRSFYSICASFHMSGISPEELRFALFLLTLRMKRRG--GPMP------W 132
GG P EDPH HIRSF + SF + G+S E LR LF +LR + R +P W
Sbjct: 70 GGSPTEDPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARAWLNTLPPDSVTNW 129
Query: 133 R-------------------------------------MARFKRMVKACPHNGIPECILM 192
RFK +++ CPH+GIP CI +
Sbjct: 130 NDLAEKFLRKYFPPTRNAKFRSEIMSFQQSEDETTSDAWERFKELLRKCPHHGIPHCIQL 189
Query: 193 EVFYFGLNKATQQTADAVFVGGMLKSSYNQIKAMLDTMASNNEEWDEDDFDNRRGGRGRS 236
E FY GLN A++ DA G +L SYN+ +L+ +ASNN +W R R
Sbjct: 190 ETFYNGLNAASRMVLDASANGAILSKSYNEAFEILERIASNNYQW-----STNRAHTSRK 249
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V2U7 | 2.3e-35 | 70.37 | Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... | [more] |
U5CUI2 | 1.1e-34 | 36.80 | Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... | [more] |
A0A0A0K6F9 | 9.1e-32 | 64.55 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1 | [more] |
A0A5A7UDN8 | 1.0e-30 | 68.04 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7V1F3 | 8.5e-30 | 44.32 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
Match Name | E-value | Identity | Description | |
WP_217833177.1 | 6.4e-40 | 40.52 | retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... | [more] |
XP_038887458.1 | 9.6e-36 | 35.69 | uncharacterized protein LOC120077591 [Benincasa hispida] | [more] |
KAA0062403.1 | 4.8e-35 | 70.37 | putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... | [more] |
ERM93404.1 | 2.4e-34 | 36.80 | hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda] | [more] |
XP_030497803.1 | 4.0e-34 | 36.43 | uncharacterized protein LOC115713460 [Cannabis sativa] | [more] |
Match Name | E-value | Identity | Description | |