PI0026802 (gene) Melon (PI 482460) v1

Overview


Name	PI0026802
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr05: 17280256 .. 17281089 (-)
RNA-Seq Expression	PI0026802
Synteny	PI0026802

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGCTTCGACGCAGAGGCCATCAACAGTCTATACGACGTGCCCAACGATGTTGAAACGCCTGGGCATGAATATGTGGTAAGCCCAATGAAGAAGATGGCCCGGGAAGCGTTAGAAGTCATCGCCTGGCCTGGGGTCGCATGGGAGATCAGGCCGATGGGAAAATATTTGCTTTATCCACACCAACTAACCACAGAAGCAAATGTGTGGCTGTTTTTCATCAAGAAGAAGATATTCCCCACGCGCCATGACAGCACCATCAATTTAGAGTCAGCGATGATACTTTACTGCATACTGACAAAGAAATGCGTAAACCTCGGCGATCTGATAGCCACATCCATCCTGGCTTGGATGCGAGCTCCCAAGGGCGCCATGCCTTTCCCATCTACAATTGAAGCCATCTGCGTGAAGGTCGTACCCTTCCTAGGTGCCATGAACACTGTTCCAATTCCAGGCGTCTTGTGCAACCAAATGTCTTTAAATCGCATGATCACACTCCATGCCCACAAGGAAATGGAAAGGCGATCTAAGACATTGGGTGACACGGCCAATGAAGGCGCAGCCCAAGCAGAATGCAAAAGAAAGGCCCCAGTCGCCGCATCAACCCCTCAACGAAAAGTAAAAAACCAAGGGTTGATGCGGCAAAACAACCTCTTCCACTCAAAGTTATCCACCCTCCTTCCCGCCCAACCAAAAGAATTCCCTCCAAAATCCAAAAAATTCCAGCCTCTCCCAACCTCCTCGCCACTCTTCGCCTACTCCATCCACCCCACCTTCCTCTATCATTTCCCCCCACCATTCACCTCTTCCTCACCTCTTATCCCCCATTAA

mRNA sequence

ATGGTGAGCTTCGACGCAGAGGCCATCAACAGTCTATACGACGTGCCCAACGATGTTGAAACGCCTGGGCATGAATATGTGGTAAGCCCAATGAAGAAGATGGCCCGGGAAGCGTTAGAAGTCATCGCCTGGCCTGGGGTCGCATGGGAGATCAGGCCGATGGGAAAATATTTGCTTTATCCACACCAACTAACCACAGAAGCAAATGTGTGGCTGTTTTTCATCAAGAAGAAGATATTCCCCACGCGCCATGACAGCACCATCAATTTAGAGTCAGCGATGATACTTTACTGCATACTGACAAAGAAATGCGTAAACCTCGGCGATCTGATAGCCACATCCATCCTGGCTTGGATGCGAGCTCCCAAGGGCGCCATGCCTTTCCCATCTACAATTGAAGCCATCTGCGTGAAGGTCGTACCCTTCCTAGGTGCCATGAACACTGTTCCAATTCCAGGCGTCTTGTGCAACCAAATGTCTTTAAATCGCATGATCACACTCCATGCCCACAAGGAAATGGAAAGGCGATCTAAGACATTGGGTGACACGGCCAATGAAGGCGCAGCCCAAGCAGAATGCAAAAGAAAGGCCCCAGTCGCCGCATCAACCCCTCAACGAAAAGTAAAAAACCAAGGGTTGATGCGGCAAAACAACCTCTTCCACTCAAAGTTATCCACCCTCCTTCCCGCCCAACCAAAAGAATTCCCTCCAAAATCCAAAAAATTCCAGCCTCTCCCAACCTCCTCGCCACTCTTCGCCTACTCCATCCACCCCACCTTCCTCTATCATTTCCCCCCACCATTCACCTCTTCCTCACCTCTTATCCCCCATTAA

Coding sequence (CDS)

ATGGTGAGCTTCGACGCAGAGGCCATCAACAGTCTATACGACGTGCCCAACGATGTTGAAACGCCTGGGCATGAATATGTGGTAAGCCCAATGAAGAAGATGGCCCGGGAAGCGTTAGAAGTCATCGCCTGGCCTGGGGTCGCATGGGAGATCAGGCCGATGGGAAAATATTTGCTTTATCCACACCAACTAACCACAGAAGCAAATGTGTGGCTGTTTTTCATCAAGAAGAAGATATTCCCCACGCGCCATGACAGCACCATCAATTTAGAGTCAGCGATGATACTTTACTGCATACTGACAAAGAAATGCGTAAACCTCGGCGATCTGATAGCCACATCCATCCTGGCTTGGATGCGAGCTCCCAAGGGCGCCATGCCTTTCCCATCTACAATTGAAGCCATCTGCGTGAAGGTCGTACCCTTCCTAGGTGCCATGAACACTGTTCCAATTCCAGGCGTCTTGTGCAACCAAATGTCTTTAAATCGCATGATCACACTCCATGCCCACAAGGAAATGGAAAGGCGATCTAAGACATTGGGTGACACGGCCAATGAAGGCGCAGCCCAAGCAGAATGCAAAAGAAAGGCCCCAGTCGCCGCATCAACCCCTCAACGAAAAGTAAAAAACCAAGGGTTGATGCGGCAAAACAACCTCTTCCACTCAAAGTTATCCACCCTCCTTCCCGCCCAACCAAAAGAATTCCCTCCAAAATCCAAAAAATTCCAGCCTCTCCCAACCTCCTCGCCACTCTTCGCCTACTCCATCCACCCCACCTTCCTCTATCATTTCCCCCCACCATTCACCTCTTCCTCACCTCTTATCCCCCATTAA

Protein sequence

MVSFDAEAINSLYDVPNDVETPGHEYVVSPMKKMAREALEVIAWPGVAWEIRPMGKYLLYPHQLTTEANVWLFFIKKKIFPTRHDSTINLESAMILYCILTKKCVNLGDLIATSILAWMRAPKGAMPFPSTIEAICVKVVPFLGAMNTVPIPGVLCNQMSLNRMITLHAHKEMERRSKTLGDTANEGAAQAECKRKAPVAASTPQRKVKNQGLMRQNNLFHSKLSTLLPAQPKEFPPKSKKFQPLPTSSPLFAYSIHPTFLYHFPPPFTSSSPLIPH

Homology

[Close]

BLAST of PI0026802 vs. ExPASy TrEMBL
Match: A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-36
Identity = 77/141 (54.61%), Postives = 103/141 (73.05%), Query Frame = 0


Query: 4   FDAEAINSLYDVPNDVETPGHEYVVSPMKKMAREALEVIAWPGVAWEIRPMG-KYLLYPH 63
           F+ E IN LY+ PND E  G E V    K +A+EAL+V+AWPG+  E++PM  +Y LYPH
Sbjct: 32  FNVEVINELYNSPNDAEYLGQEIVTKSTKGLAKEALKVVAWPGIMSEVKPMKLRYQLYPH 91

Query: 64  QLTTEANVWLFFIKKKIFPTRHDSTINLESAMILYCILTKKCVNLGDLIATSILAWMRAP 123
            LTT+ANVW+FF K KIFPT +DSTI+++  +ILYCI+ KK +NL ++I  +IL WM  P
Sbjct: 92  -LTTKANVWMFFTKNKIFPTCYDSTISMDYTVILYCIMIKKAINLDEIIKAAILTWMEIP 151

Query: 124 KGAMPFPSTIEAICVKVVPFL 144
           K AMPFPS +E +C+K +P L
Sbjct: 152 KEAMPFPSLMEKLCLKFLPSL 171

[Close]

BLAST of PI0026802 vs. ExPASy TrEMBL
Match: A0A5A7U806 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.1e-31
Identity = 70/138 (50.72%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 2    VSFDAEAINSLYDVPNDVET-PGHEYVVSPMKKMAREALEVIAWPGVAWEIRPMGKYLLY 61
            V F  E IN LYD+PND+   PG   +V   +  A++ +++I WP       P  +  L+
Sbjct: 1232 VPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTPTRRLQLF 1291

Query: 62   PHQLTTEANVWLFFIKKKIFPTRHDSTINLESAMILYCILTKKCVNLGDLIATSILAWMR 121
            PHQLT EANVWLFFIKKKIFPT HDSTI  E A++LYCI  KK  NLG ++  + L+WMR
Sbjct: 1292 PHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNEAFLSWMR 1351

Query: 122  APKGAMPFPSTIEAICVK 139
             PK A PFP+T++ +C+K
Sbjct: 1352 NPKNAKPFPTTVKKLCLK 1369

[Close]

BLAST of PI0026802 vs. ExPASy TrEMBL
Match: A0A5D3CVL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00870 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.1e-31
Identity = 70/138 (50.72%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 2   VSFDAEAINSLYDVPNDVET-PGHEYVVSPMKKMAREALEVIAWPGVAWEIRPMGKYLLY 61
           V F  E IN LYD+PND+   PG   +V   +  A++ +++I WP       P  +  L+
Sbjct: 71  VPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTPTRRLQLF 130

Query: 62  PHQLTTEANVWLFFIKKKIFPTRHDSTINLESAMILYCILTKKCVNLGDLIATSILAWMR 121
           PHQLT EANVWLFFIKKKIFPT HDSTI  E A++LYCI  KK  NLG ++  + L+WMR
Sbjct: 131 PHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNEAFLSWMR 190

Query: 122 APKGAMPFPSTIEAICVK 139
            PK A PFP+T++ +C+K
Sbjct: 191 NPKNAKPFPTTVKKLCLK 208

[Close]

BLAST of PI0026802 vs. ExPASy TrEMBL
Match: A0A5D3CBF2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00020 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-24
Identity = 70/171 (40.94%), Postives = 97/171 (56.73%), Query Frame = 0


Query: 3   SFDAEAINSLYDVPNDVET-PGHEYVVSPMKKMAREALEVIAWPGVAWEIRPMGKYLLYP 62
           SF+ +AIN LY++P+D +  P   + + P++ + +  L+VI W G  WE  P G+  LYP
Sbjct: 57  SFNLKAINKLYELPDDAKAYPCQPFDIEPIEVLVKRILKVIVWLGADWERMPTGRLQLYP 116

Query: 63  HQLTTEANVWLFFIKKKIFPTRHDSTINLESAMILYCILTKKCVNLGDLIATSILAWMRA 122
           HQLT EANVWLFFIKKKIFPTRHDST  L  ++    I   +   LG   A        A
Sbjct: 117 HQLTIEANVWLFFIKKKIFPTRHDSTCQL--SIRCSSIAFSRNRQLGFCNARGTPRRDGA 176

Query: 123 PKGAMPFPSTIEAICVKVVPFLGAMNTVPIPGVLCNQMSLNRMITLHAHKE 173
           P+      +TI  +C+K +  L  +    + G  CN   LNR+I LH ++E
Sbjct: 177 PQRRQALSTTIAKLCLKYLLTLTRLPRTNVVGGRCNLAGLNRVINLHQNEE 225

[Close]

BLAST of PI0026802 vs. ExPASy TrEMBL
Match: A0A5D3CW17 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00800 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.7e-24
Identity = 65/170 (38.24%), Postives = 95/170 (55.88%), Query Frame = 0


Query: 2   VSFDAEAINSLYDVPNDVETPGHEYVVSPMKKMAREALEVIAWPGVAWEIRPMGKYLLYP 61
           V F  +AIN+LY + N+    GH    +P  +  ++ALE I WPG  W+  P  KY L+P
Sbjct: 85  VDFGPKAINALYGLKNN--EIGHLIFENPKARDLQDALENIIWPGTKWDRMPTEKYQLFP 144

Query: 62  HQLTTEANVWLFFIKKKIFPTRHDSTINLESAMILYCILTKKCVNLGDLIATSILAWMRA 121
           + L TE +VWL FIKK I PTRHDSTI++E  M+LY           ++    ++AW++ 
Sbjct: 145 NDLNTEVSVWLVFIKKNIMPTRHDSTISMEIIMLLY--YNGDSNQFNEISCEHLIAWVKH 204

Query: 122 PKGAMPFPSTIEAICVKVVPFLGAMNTVPIPGVLCNQMSLNRMITLHAHK 172
           P GA PF    + + +K  P L     V +   +C   +L+R IT+H +K
Sbjct: 205 PCGAKPFLCLTKQLYIKAYPELEKSQQVQVSNGVCIGPTLHRFITIHKNK 250

[Close]

BLAST of PI0026802 vs. NCBI nr
Match: KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 2.3e-36
Identity = 77/141 (54.61%), Postives = 103/141 (73.05%), Query Frame = 0


Query: 4   FDAEAINSLYDVPNDVETPGHEYVVSPMKKMAREALEVIAWPGVAWEIRPMG-KYLLYPH 63
           F+ E IN LY+ PND E  G E V    K +A+EAL+V+AWPG+  E++PM  +Y LYPH
Sbjct: 32  FNVEVINELYNSPNDAEYLGQEIVTKSTKGLAKEALKVVAWPGIMSEVKPMKLRYQLYPH 91

Query: 64  QLTTEANVWLFFIKKKIFPTRHDSTINLESAMILYCILTKKCVNLGDLIATSILAWMRAP 123
            LTT+ANVW+FF K KIFPT +DSTI+++  +ILYCI+ KK +NL ++I  +IL WM  P
Sbjct: 92  -LTTKANVWMFFTKNKIFPTCYDSTISMDYTVILYCIMIKKAINLDEIIKAAILTWMEIP 151

Query: 124 KGAMPFPSTIEAICVKVVPFL 144
           K AMPFPS +E +C+K +P L
Sbjct: 152 KEAMPFPSLMEKLCLKFLPSL 171

[Close]

BLAST of PI0026802 vs. NCBI nr
Match: KAA0049609.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 8.4e-31
Identity = 70/138 (50.72%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 2    VSFDAEAINSLYDVPNDVET-PGHEYVVSPMKKMAREALEVIAWPGVAWEIRPMGKYLLY 61
            V F  E IN LYD+PND+   PG   +V   +  A++ +++I WP       P  +  L+
Sbjct: 1232 VPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTPTRRLQLF 1291

Query: 62   PHQLTTEANVWLFFIKKKIFPTRHDSTINLESAMILYCILTKKCVNLGDLIATSILAWMR 121
            PHQLT EANVWLFFIKKKIFPT HDSTI  E A++LYCI  KK  NLG ++  + L+WMR
Sbjct: 1292 PHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNEAFLSWMR 1351

Query: 122  APKGAMPFPSTIEAICVK 139
             PK A PFP+T++ +C+K
Sbjct: 1352 NPKNAKPFPTTVKKLCLK 1369

[Close]

BLAST of PI0026802 vs. NCBI nr
Match: TYK15967.1 (hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 8.4e-31
Identity = 70/138 (50.72%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 2   VSFDAEAINSLYDVPNDVET-PGHEYVVSPMKKMAREALEVIAWPGVAWEIRPMGKYLLY 61
           V F  E IN LYD+PND+   PG   +V   +  A++ +++I WP       P  +  L+
Sbjct: 71  VPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTPTRRLQLF 130

Query: 62  PHQLTTEANVWLFFIKKKIFPTRHDSTINLESAMILYCILTKKCVNLGDLIATSILAWMR 121
           PHQLT EANVWLFFIKKKIFPT HDSTI  E A++LYCI  KK  NLG ++  + L+WMR
Sbjct: 131 PHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNEAFLSWMR 190

Query: 122 APKGAMPFPSTIEAICVK 139
            PK A PFP+T++ +C+K
Sbjct: 191 NPKNAKPFPTTVKKLCLK 208

[Close]

BLAST of PI0026802 vs. NCBI nr
Match: KAA0062748.1 (hypothetical protein E6C27_scaffold382G00810 [Cucumis melo var. makuwa] >TYK08825.1 hypothetical protein E5676_scaffold87G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-24
Identity = 70/171 (40.94%), Postives = 97/171 (56.73%), Query Frame = 0


Query: 3   SFDAEAINSLYDVPNDVET-PGHEYVVSPMKKMAREALEVIAWPGVAWEIRPMGKYLLYP 62
           SF+ +AIN LY++P+D +  P   + + P++ + +  L+VI W G  WE  P G+  LYP
Sbjct: 57  SFNLKAINKLYELPDDAKAYPCQPFDIEPIEVLVKRILKVIVWLGADWERMPTGRLQLYP 116

Query: 63  HQLTTEANVWLFFIKKKIFPTRHDSTINLESAMILYCILTKKCVNLGDLIATSILAWMRA 122
           HQLT EANVWLFFIKKKIFPTRHDST  L  ++    I   +   LG   A        A
Sbjct: 117 HQLTIEANVWLFFIKKKIFPTRHDSTCQL--SIRCSSIAFSRNRQLGFCNARGTPRRDGA 176

Query: 123 PKGAMPFPSTIEAICVKVVPFLGAMNTVPIPGVLCNQMSLNRMITLHAHKE 173
           P+      +TI  +C+K +  L  +    + G  CN   LNR+I LH ++E
Sbjct: 177 PQRRQALSTTIAKLCLKYLLTLTRLPRTNVVGGRCNLAGLNRVINLHQNEE 225

[Close]

BLAST of PI0026802 vs. NCBI nr
Match: KAA0041264.1 (hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa] >TYK16063.1 hypothetical protein E5676_scaffold32G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 7.6e-24
Identity = 65/170 (38.24%), Postives = 95/170 (55.88%), Query Frame = 0


Query: 2   VSFDAEAINSLYDVPNDVETPGHEYVVSPMKKMAREALEVIAWPGVAWEIRPMGKYLLYP 61
           V F  +AIN+LY + N+    GH    +P  +  ++ALE I WPG  W+  P  KY L+P
Sbjct: 85  VDFGPKAINALYGLKNN--EIGHLIFENPKARDLQDALENIIWPGTKWDRMPTEKYQLFP 144

Query: 62  HQLTTEANVWLFFIKKKIFPTRHDSTINLESAMILYCILTKKCVNLGDLIATSILAWMRA 121
           + L TE +VWL FIKK I PTRHDSTI++E  M+LY           ++    ++AW++ 
Sbjct: 145 NDLNTEVSVWLVFIKKNIMPTRHDSTISMEIIMLLY--YNGDSNQFNEISCEHLIAWVKH 204

Query: 122 PKGAMPFPSTIEAICVKVVPFLGAMNTVPIPGVLCNQMSLNRMITLHAHK 172
           P GA PF    + + +K  P L     V +   +C   +L+R IT+H +K
Sbjct: 205 PCGAKPFLCLTKQLYIKAYPELEKSQQVQVSNGVCIGPTLHRFITIHKNK 250

The following BLAST results are available for this feature:

BLAST of PI0026802 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026802 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6M5	1.1e-36	54.61	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002...	[more]
A0A5A7U806	4.1e-31	50.72	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE...	[more]
A0A5D3CVL7	4.1e-31	50.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CBF2	1.3e-24	40.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CW17	3.7e-24	38.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0026802 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062900.1	2.3e-36	54.61	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0049609.1	8.4e-31	50.72	transposase [Cucumis melo var. makuwa]	[more]
TYK15967.1	8.4e-31	50.72	hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]	[more]
KAA0062748.1	2.6e-24	40.94	hypothetical protein E6C27_scaffold382G00810 [Cucumis melo var. makuwa] >TYK0882...	[more]
KAA0041264.1	7.6e-24	38.24	hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa] >TYK160...	[more]

BLAST of PI0026802 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026802.1	PI0026802.1	mRNA