PI0026796 (gene) Melon (PI 482460) v1

Overview


Name	PI0026796
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr04: 12786826 .. 12787341 (-)
RNA-Seq Expression	PI0026796
Synteny	PI0026796

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGATGTACCTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAAAGCCCGATGAATTGGAAGAAGTTGAACAACACGTGCAAGAAGTGCCTCCTGTGAGACAAACACAAAGCGGGACTGGTGACGTTAGTCCAATAATGATGATGCCTGCATTTGGAACAGGATATTATGATTCAGGAGTCAGTCAATCATCAGACTTCGGGACAGGATATTATAATTCAGAGGCAGGTCCATCATTATCAAACTATGGAATGGAATACTACGATTTAGGGACTGATCCATCATCTTCATACATGCATGGACATGGGCGTGGTCGTGGAGAACATAACGAATATTTGTACTACGAAGCGCCTACAGCGGTACTCGAGCAGCCAGATGAGCAAAAACAACAAGTGAATCAGAAGGGACCAGAGCAACAAAGAGTGCAGGGTCGACGAGACAACCAACTAGAAATCGGCGACGTCCAGGTTGTGGAACACATTGATTTTTTTTTAAAATTGTAA

mRNA sequence

ATGTATGATGTACCTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAAAGCCCGATGAATTGGAAGAAGTTGAACAACACGTGCAAGAAGTGCCTCCTGTGAGACAAACACAAAGCGGGACTGGTGACGTTAGTCCAATAATGATGATGCCTGCATTTGGAACAGGATATTATGATTCAGGAGTCAGTCAATCATCAGACTTCGGGACAGGATATTATAATTCAGAGGCAGGTCCATCATTATCAAACTATGGAATGGAATACTACGATTTAGGGACTGATCCATCATCTTCATACATGCATGGACATGGGCGTGGTCGTGGAGAACATAACGAATATTTGTACTACGAAGCGCCTACAGCGGTACTCGAGCAGCCAGATGAGCAAAAACAACAAGTGAATCAGAAGGGACCAGAGCAACAAAGAGTGCAGGGTCGACGAGACAACCAACTAGAAATCGGCGACGTCCAGGTTGTGGAACACATTGATTTTTTTTTAAAATTGTAA

Coding sequence (CDS)

ATGTATGATGTACCTATTGTACCTGCACCAGTTCAAAGGAGACGTGCTCGAGTGCAAAAGCCCGATGAATTGGAAGAAGTTGAACAACACGTGCAAGAAGTGCCTCCTGTGAGACAAACACAAAGCGGGACTGGTGACGTTAGTCCAATAATGATGATGCCTGCATTTGGAACAGGATATTATGATTCAGGAGTCAGTCAATCATCAGACTTCGGGACAGGATATTATAATTCAGAGGCAGGTCCATCATTATCAAACTATGGAATGGAATACTACGATTTAGGGACTGATCCATCATCTTCATACATGCATGGACATGGGCGTGGTCGTGGAGAACATAACGAATATTTGTACTACGAAGCGCCTACAGCGGTACTCGAGCAGCCAGATGAGCAAAAACAACAAGTGAATCAGAAGGGACCAGAGCAACAAAGAGTGCAGGGTCGACGAGACAACCAACTAGAAATCGGCGACGTCCAGGTTGTGGAACACATTGATTTTTTTTTAAAATTGTAA

Protein sequence

MYDVPIVPAPVQRRRARVQKPDELEEVEQHVQEVPPVRQTQSGTGDVSPIMMMPAFGTGYYDSGVSQSSDFGTGYYNSEAGPSLSNYGMEYYDLGTDPSSSYMHGHGRGRGEHNEYLYYEAPTAVLEQPDEQKQQVNQKGPEQQRVQGRRDNQLEIGDVQVVEHIDFFLKL

Homology

[Close]

BLAST of PI0026796 vs. ExPASy TrEMBL
Match: A0A5A7U731 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00130 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.2e-54
Identity = 115/150 (76.67%), Postives = 130/150 (86.67%), Query Frame = 0


Query: 1   MYDVPIVPAPVQRRRARVQKPDELEEVEQHVQEVPPVRQTQSGTGDVSPIMMMPAFGTGY 60
           MYDVPIVPAP+QRRRA VQ+ DELEEV+QH++EVPPV QT+S T  VSP++MM AFGTGY
Sbjct: 277 MYDVPIVPAPIQRRRALVQELDELEEVDQHMEEVPPVTQTKSETSYVSPMIMMSAFGTGY 336

Query: 61  YDSGVSQSSDFGTGYYNSEAGPSLSNYGMEYYDLGTDPSSSYMHGHGRGRGEHNEYLYYE 120
           YD GVSQSSDFGTGYYN   GPS SN+G EYYDLGT+PSSSYMHGHGRGRGEHNEYLYY 
Sbjct: 337 YDPGVSQSSDFGTGYYNL-TGPSSSNFGQEYYDLGTNPSSSYMHGHGRGRGEHNEYLYYV 396

Query: 121 APTAVLEQPDEQKQQVNQKGPEQQRVQGRR 151
           AP AV E+P+EQ+QQ NQ+  +QQRVQ RR
Sbjct: 397 APAAVSEEPNEQQQQENQEELQQQRVQSRR 425

[Close]

BLAST of PI0026796 vs. ExPASy TrEMBL
Match: A0A5A7T6Q6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00300 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.4e-53
Identity = 117/170 (68.82%), Postives = 135/170 (79.41%), Query Frame = 0


Query: 1   MYDVPIVPAPVQRRRARVQKPDELEEVEQHVQEVPPV--RQTQSGTGDVSPIMMMPAFGT 60
           MYDV IVPAPVQR+R  VQ+ D+LEEV+QHV+EVPPV   QTQS    VSP+MMMP FGT
Sbjct: 344 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 403

Query: 61  GYYDSGVSQSSDFGTGYYNSEAGPSLSNYGMEYYDLGTDPSSSYMHGHGRGRGEHNEYLY 120
            YYD GV QSSDFG  YYNSEAGPS +++G +YYDLG++PSSSYMHGHGRGRGEHNEYLY
Sbjct: 404 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 463

Query: 121 YEAPTAVLEQPDEQKQQVNQKGPEQQRVQGRRDNQLEIGDVQVVEHIDFF 169
           YE PT V +Q DEQ+QQ  ++    +  +   DNQLEI DVQVVEHIDFF
Sbjct: 464 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFF 513

[Close]

BLAST of PI0026796 vs. ExPASy TrEMBL
Match: A0A5D3CHF6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001150 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.4e-53
Identity = 117/170 (68.82%), Postives = 135/170 (79.41%), Query Frame = 0


Query: 1   MYDVPIVPAPVQRRRARVQKPDELEEVEQHVQEVPPV--RQTQSGTGDVSPIMMMPAFGT 60
           MYDV IVPAPVQR+R  VQ+ D+LEEV+QHV+EVPPV   QTQS    VSP+MMMP FGT
Sbjct: 147 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 206

Query: 61  GYYDSGVSQSSDFGTGYYNSEAGPSLSNYGMEYYDLGTDPSSSYMHGHGRGRGEHNEYLY 120
            YYD GV QSSDFG  YYNSEAGPS +++G +YYDLG++PSSSYMHGHGRGRGEHNEYLY
Sbjct: 207 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 266

Query: 121 YEAPTAVLEQPDEQKQQVNQKGPEQQRVQGRRDNQLEIGDVQVVEHIDFF 169
           YE PT V +Q DEQ+QQ  ++    +  +   DNQLEI DVQVVEHIDFF
Sbjct: 267 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFF 316

[Close]

BLAST of PI0026796 vs. ExPASy TrEMBL
Match: A0A5A7SU33 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00810 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 5.7e-52
Identity = 111/161 (68.94%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MYDVPIVPAPVQRRRARVQKPDELEEVEQHVQEVPPVRQTQSGTGDVSPIMMMPAFGTGY 60
           MYDVPIVPAPVQRRR  VQ+PD+LEEV+QH +EVPP+ QTQS    VSP+MMMP FGT Y
Sbjct: 597 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMPTFGTTY 656

Query: 61  YDSGVSQSSDFGTGYYNSEAGPSLSNYGMEYYDLGTDPSSSYMHGHGRGRGEHNEYLYYE 120
           YDSGV QSSDFG GYYNSEAG S +++G +YYDLG+DPSSSYMHGHGRGRGEHNEYLYYE
Sbjct: 657 YDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYE 716

Query: 121 APTAVLEQPDEQKQQVNQKGPEQQRVQGRRDNQLEIGDVQV 162
            P AV EQ +E +QQ N   P Q   Q +++NQ EI   +V
Sbjct: 717 VPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRV 757

[Close]

BLAST of PI0026796 vs. ExPASy TrEMBL
Match: A0A5A7UKC7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G001140 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 5.7e-52
Identity = 111/161 (68.94%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MYDVPIVPAPVQRRRARVQKPDELEEVEQHVQEVPPVRQTQSGTGDVSPIMMMPAFGTGY 60
           MYDVPIVPAPVQRRR  VQ+PD+LEEV+QH +EVPP+ QT+S    VSP+MMMP FGT Y
Sbjct: 605 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTKSEHNYVSPVMMMPTFGTTY 664

Query: 61  YDSGVSQSSDFGTGYYNSEAGPSLSNYGMEYYDLGTDPSSSYMHGHGRGRGEHNEYLYYE 120
           YDSGV QSSDFG GYYNSEAG S +++G +YYDLG+DPSSSYMHGHGRGRGEHNEYLYYE
Sbjct: 665 YDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYE 724

Query: 121 APTAVLEQPDEQKQQVNQKGPEQQRVQGRRDNQLEIGDVQV 162
            P AV EQ DE +QQ N   P Q   Q +++NQ EI   +V
Sbjct: 725 VPAAVPEQSDELQQQENAAVPGQSDGQQQQENQEEIQQQRV 765

[Close]

BLAST of PI0026796 vs. NCBI nr
Match: KAA0051098.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK02687.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 2.5e-54
Identity = 115/150 (76.67%), Postives = 130/150 (86.67%), Query Frame = 0


Query: 1   MYDVPIVPAPVQRRRARVQKPDELEEVEQHVQEVPPVRQTQSGTGDVSPIMMMPAFGTGY 60
           MYDVPIVPAP+QRRRA VQ+ DELEEV+QH++EVPPV QT+S T  VSP++MM AFGTGY
Sbjct: 277 MYDVPIVPAPIQRRRALVQELDELEEVDQHMEEVPPVTQTKSETSYVSPMIMMSAFGTGY 336

Query: 61  YDSGVSQSSDFGTGYYNSEAGPSLSNYGMEYYDLGTDPSSSYMHGHGRGRGEHNEYLYYE 120
           YD GVSQSSDFGTGYYN   GPS SN+G EYYDLGT+PSSSYMHGHGRGRGEHNEYLYY 
Sbjct: 337 YDPGVSQSSDFGTGYYNL-TGPSSSNFGQEYYDLGTNPSSSYMHGHGRGRGEHNEYLYYV 396

Query: 121 APTAVLEQPDEQKQQVNQKGPEQQRVQGRR 151
           AP AV E+P+EQ+QQ NQ+  +QQRVQ RR
Sbjct: 397 APAAVSEEPNEQQQQENQEELQQQRVQSRR 425

[Close]

BLAST of PI0026796 vs. NCBI nr
Match: KAA0037866.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 219.2 bits (557), Expect = 2.8e-53
Identity = 117/170 (68.82%), Postives = 135/170 (79.41%), Query Frame = 0


Query: 1   MYDVPIVPAPVQRRRARVQKPDELEEVEQHVQEVPPV--RQTQSGTGDVSPIMMMPAFGT 60
           MYDV IVPAPVQR+R  VQ+ D+LEEV+QHV+EVPPV   QTQS    VSP+MMMP FGT
Sbjct: 344 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 403

Query: 61  GYYDSGVSQSSDFGTGYYNSEAGPSLSNYGMEYYDLGTDPSSSYMHGHGRGRGEHNEYLY 120
            YYD GV QSSDFG  YYNSEAGPS +++G +YYDLG++PSSSYMHGHGRGRGEHNEYLY
Sbjct: 404 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 463

Query: 121 YEAPTAVLEQPDEQKQQVNQKGPEQQRVQGRRDNQLEIGDVQVVEHIDFF 169
           YE PT V +Q DEQ+QQ  ++    +  +   DNQLEI DVQVVEHIDFF
Sbjct: 464 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFF 513

[Close]

BLAST of PI0026796 vs. NCBI nr
Match: TYK09816.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 219.2 bits (557), Expect = 2.8e-53
Identity = 117/170 (68.82%), Postives = 135/170 (79.41%), Query Frame = 0


Query: 1   MYDVPIVPAPVQRRRARVQKPDELEEVEQHVQEVPPV--RQTQSGTGDVSPIMMMPAFGT 60
           MYDV IVPAPVQR+R  VQ+ D+LEEV+QHV+EVPPV   QTQS    VSP+MMMP FGT
Sbjct: 147 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 206

Query: 61  GYYDSGVSQSSDFGTGYYNSEAGPSLSNYGMEYYDLGTDPSSSYMHGHGRGRGEHNEYLY 120
            YYD GV QSSDFG  YYNSEAGPS +++G +YYDLG++PSSSYMHGHGRGRGEHNEYLY
Sbjct: 207 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 266

Query: 121 YEAPTAVLEQPDEQKQQVNQKGPEQQRVQGRRDNQLEIGDVQVVEHIDFF 169
           YE PT V +Q DEQ+QQ  ++    +  +   DNQLEI DVQVVEHIDFF
Sbjct: 267 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFF 316

[Close]

BLAST of PI0026796 vs. NCBI nr
Match: KAA0055624.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-51
Identity = 111/161 (68.94%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MYDVPIVPAPVQRRRARVQKPDELEEVEQHVQEVPPVRQTQSGTGDVSPIMMMPAFGTGY 60
           MYDVPIVPAPVQRRR  VQ+PD+LEEV+QH +EVPP+ QT+S    VSP+MMMP FGT Y
Sbjct: 605 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTKSEHNYVSPVMMMPTFGTTY 664

Query: 61  YDSGVSQSSDFGTGYYNSEAGPSLSNYGMEYYDLGTDPSSSYMHGHGRGRGEHNEYLYYE 120
           YDSGV QSSDFG GYYNSEAG S +++G +YYDLG+DPSSSYMHGHGRGRGEHNEYLYYE
Sbjct: 665 YDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYE 724

Query: 121 APTAVLEQPDEQKQQVNQKGPEQQRVQGRRDNQLEIGDVQV 162
            P AV EQ DE +QQ N   P Q   Q +++NQ EI   +V
Sbjct: 725 VPAAVPEQSDELQQQENAAVPGQSDGQQQQENQEEIQQQRV 765

[Close]

BLAST of PI0026796 vs. NCBI nr
Match: KAA0034013.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-51
Identity = 111/161 (68.94%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MYDVPIVPAPVQRRRARVQKPDELEEVEQHVQEVPPVRQTQSGTGDVSPIMMMPAFGTGY 60
           MYDVPIVPAPVQRRR  VQ+PD+LEEV+QH +EVPP+ QTQS    VSP+MMMP FGT Y
Sbjct: 597 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMPTFGTTY 656

Query: 61  YDSGVSQSSDFGTGYYNSEAGPSLSNYGMEYYDLGTDPSSSYMHGHGRGRGEHNEYLYYE 120
           YDSGV QSSDFG GYYNSEAG S +++G +YYDLG+DPSSSYMHGHGRGRGEHNEYLYYE
Sbjct: 657 YDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYE 716

Query: 121 APTAVLEQPDEQKQQVNQKGPEQQRVQGRRDNQLEIGDVQV 162
            P AV EQ +E +QQ N   P Q   Q +++NQ EI   +V
Sbjct: 717 VPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRV 757

The following BLAST results are available for this feature:

BLAST of PI0026796 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026796 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U731	1.2e-54	76.67	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7T6Q6	1.4e-53	68.82	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CHF6	1.4e-53	68.82	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7SU33	5.7e-52	68.94	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7UKC7	5.7e-52	68.94	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of PI0026796 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051098.1	2.5e-54	76.67	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0037866.1	2.8e-53	68.82	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK09816.1	2.8e-53	68.82	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0055624.1	1.2e-51	68.94	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0034013.1	1.2e-51	68.94	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]

BLAST of PI0026796 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026796.1	PI0026796.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0008270	zinc ion binding