PI0026710 (gene) Melon (PI 482460) v1

Overview


Name	PI0026710
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	chr08: 6777224 .. 6777891 (-)
RNA-Seq Expression	PI0026710
Synteny	PI0026710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGGAGTTCGTTTAAGAGAAGGAGCTCGTTTCAAATGTATTCCAGAATCTCGTCCTTTTGGAAAATCGTCTCTTGCTGGTAAGTCGTTTGTTTACCTCCTAATGTGTCAAACTTGCATTCTCATTCTTCTGTGTCTCATTCTACATCATCGATTGAGCTTTTTTACACTAATTCTGACGATCAAGATCATGTTAGTTTGGCTACTATGATTCGACGATCTGTGTTTTTAAAGCCTTTCGAAAAACCTCTTTTGTCTCAATCTGCAAATCCTCCTACCTCTGCATCTCATCCACCTGTTTCTCCATATCCTCCCTCAGAACCTGCTACTTCTGAGCCTATCCAATCTCATAACTCCCCTCCATCTCAAGATGGGCCATCCTCTCATGTTTCTGAACCTGTGAACTCCTTTGTCCCTCCTACACCTAGTCCTTCTATTCCTCCATCTTTTGAACCTGATTGTTCTGATGAACCCTCTATCCCTTCCCATGAGTCGAGTGTTTCCGTTCCTAAATCTCCAATAGTTCCTCCTAATAAACCTCACATTATTACTACCAAAGCTGGAAGGAAGAAGCTTCCTCCTAATATTCCTTATGTTCCTTTTGACGGAATCTCCTTCCATCATGAAGAGAATGTTCAGAAATGGAAGTATGTTGTTCAAAGGTGA

mRNA sequence

ATGCATGGAGTTCGTTTAAGAGAAGGAGCTCGTTTCAAATGTATTCCAGAATCTCGTCCTTTTGGAAAATCGTCTCTTGCTGAACCTGCTACTTCTGAGCCTATCCAATCTCATAACTCCCCTCCATCTCAAGATGGGCCATCCTCTCATGTTTCTGAACCTGTGAACTCCTTTGTCCCTCCTACACCTAGTCCTTCTATTCCTCCATCTTTTGAACCTGATTGTTCTGATGAACCCTCTATCCCTTCCCATGAGTCGAGTGTTTCCGTTCCTAAATCTCCAATAGTTCCTCCTAATAAACCTCACATTATTACTACCAAAGCTGGAAGGAAGAAGCTTCCTCCTAATATTCCTTATGTTCCTTTTGACGGAATCTCCTTCCATCATGAAGAGAATGTTCAGAAATGGAAGTATGTTGTTCAAAGGTGA

Coding sequence (CDS)

ATGCATGGAGTTCGTTTAAGAGAAGGAGCTCGTTTCAAATGTATTCCAGAATCTCGTCCTTTTGGAAAATCGTCTCTTGCTGAACCTGCTACTTCTGAGCCTATCCAATCTCATAACTCCCCTCCATCTCAAGATGGGCCATCCTCTCATGTTTCTGAACCTGTGAACTCCTTTGTCCCTCCTACACCTAGTCCTTCTATTCCTCCATCTTTTGAACCTGATTGTTCTGATGAACCCTCTATCCCTTCCCATGAGTCGAGTGTTTCCGTTCCTAAATCTCCAATAGTTCCTCCTAATAAACCTCACATTATTACTACCAAAGCTGGAAGGAAGAAGCTTCCTCCTAATATTCCTTATGTTCCTTTTGACGGAATCTCCTTCCATCATGAAGAGAATGTTCAGAAATGGAAGTATGTTGTTCAAAGGTGA

Protein sequence

MHGVRLREGARFKCIPESRPFGKSSLAEPATSEPIQSHNSPPSQDGPSSHVSEPVNSFVPPTPSPSIPPSFEPDCSDEPSIPSHESSVSVPKSPIVPPNKPHIITTKAGRKKLPPNIPYVPFDGISFHHEENVQKWKYVVQR

Homology

[Close]

BLAST of PI0026710 vs. ExPASy TrEMBL
Match: A0A5D3BS10 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00380 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 42/80 (52.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 67  IPPSFEPDCSDEPSIPSHESSVSVPKSPIVPPNKP----HIITTKAGRKKLPPNIPYVPF 126
           IP    P  +D+P  PS E     PK P  P  K       +TTK GRKK+P N+PYVP 
Sbjct: 169 IPHEDIPLPTDDPIAPSSEGRPESPKGPKPPKRKTQQARRNVTTKTGRKKIPANVPYVPI 228

Query: 127 DGISFHHEENVQKWKYVVQR 143
           DGISFHHEE+VQ WK+V+QR
Sbjct: 229 DGISFHHEESVQHWKFVMQR 248

[Close]

BLAST of PI0026710 vs. ExPASy TrEMBL
Match: A0A5A7VJ79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G004820 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 42/80 (52.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 67  IPPSFEPDCSDEPSIPSHESSVSVPKSPIVPPNKP----HIITTKAGRKKLPPNIPYVPF 126
           IP    P  +D+P  PS E     PK P  P  K       +TTK GRKK+P N+PYVP 
Sbjct: 169 IPHEDIPLPTDDPIAPSSEGRPESPKGPKPPKRKTQQARRNVTTKTGRKKIPANVPYVPI 228

Query: 127 DGISFHHEENVQKWKYVVQR 143
           DGISFHHEE+VQ WK+V+QR
Sbjct: 229 DGISFHHEESVQHWKFVMQR 248

[Close]

BLAST of PI0026710 vs. ExPASy TrEMBL
Match: A0A5D3DVV8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00590 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-11
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 67  IPPSFEPDCSDEPSIPSHESSVSVPKSPIVPPNK-PHIITTKAGRKKLPPNIPYVPFDGI 126
           IPP   P  +++P+ PS E  +  P+ P     +    ITTK GRK+ P NIP VP DGI
Sbjct: 403 IPPEDIPPSTNDPTAPSTEGRIESPQPPKRKTQQVRRNITTKTGRKRTPTNIPSVPIDGI 462

Query: 127 SFHHEENVQKWKYVVQR 143
           SFHHEENVQ+WKY+VQR
Sbjct: 463 SFHHEENVQRWKYMVQR 479

[Close]

BLAST of PI0026710 vs. ExPASy TrEMBL
Match: A0A5A7VG44 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G00650 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-11
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 67  IPPSFEPDCSDEPSIPSHESSVSVPKSPIVPPNK-PHIITTKAGRKKLPPNIPYVPFDGI 126
           IPP   P  +++P+ PS E  +  P+ P     +    ITTK GRK+ P NIP VP DGI
Sbjct: 426 IPPEDIPPSTNDPTAPSTEGRIESPQPPKRKTQQVRRNITTKTGRKRTPTNIPSVPIDGI 485

Query: 127 SFHHEENVQKWKYVVQR 143
           SFHHEENVQ+WKY+VQR
Sbjct: 486 SFHHEENVQRWKYMVQR 502

[Close]

BLAST of PI0026710 vs. ExPASy TrEMBL
Match: A0A5D3D6Q4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00360 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.1e-11
Identity = 41/80 (51.25%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 67  IPPSFEPDCSDEPSIPSHESSVSVPKSPIVPPNKPH----IITTKAGRKKLPPNIPYVPF 126
           IPP   P   D P  PS E     PK P  P  K       +TTK  RKK+P N+P+VP 
Sbjct: 11  IPPEDIPPPIDNPITPSSEGRPESPKGPKPPKRKTQQARKNVTTKISRKKIPVNVPFVPI 70

Query: 127 DGISFHHEENVQKWKYVVQR 143
           DGISFHHEE+VQ+WK+V+QR
Sbjct: 71  DGISFHHEESVQRWKFVMQR 90

[Close]

BLAST of PI0026710 vs. NCBI nr
Match: TYK00879.1 (uncharacterized protein E5676_scaffold602G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-11
Identity = 42/80 (52.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 67  IPPSFEPDCSDEPSIPSHESSVSVPKSPIVPPNKP----HIITTKAGRKKLPPNIPYVPF 126
           IP    P  +D+P  PS E     PK P  P  K       +TTK GRKK+P N+PYVP 
Sbjct: 169 IPHEDIPLPTDDPIAPSSEGRPESPKGPKPPKRKTQQARRNVTTKTGRKKIPANVPYVPI 228

Query: 127 DGISFHHEENVQKWKYVVQR 143
           DGISFHHEE+VQ WK+V+QR
Sbjct: 229 DGISFHHEESVQHWKFVMQR 248

[Close]

BLAST of PI0026710 vs. NCBI nr
Match: KAA0066406.1 (uncharacterized protein E6C27_scaffold21G004820 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-11
Identity = 42/80 (52.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 67  IPPSFEPDCSDEPSIPSHESSVSVPKSPIVPPNKP----HIITTKAGRKKLPPNIPYVPF 126
           IP    P  +D+P  PS E     PK P  P  K       +TTK GRKK+P N+PYVP 
Sbjct: 169 IPHEDIPLPTDDPIAPSSEGRPESPKGPKPPKRKTQQARRNVTTKTGRKKIPANVPYVPI 228

Query: 127 DGISFHHEENVQKWKYVVQR 143
           DGISFHHEE+VQ WK+V+QR
Sbjct: 229 DGISFHHEESVQHWKFVMQR 248

[Close]

BLAST of PI0026710 vs. NCBI nr
Match: TYK27876.1 (uncharacterized protein E5676_scaffold384G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 6.4e-11
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 67  IPPSFEPDCSDEPSIPSHESSVSVPKSPIVPPNK-PHIITTKAGRKKLPPNIPYVPFDGI 126
           IPP   P  +++P+ PS E  +  P+ P     +    ITTK GRK+ P NIP VP DGI
Sbjct: 403 IPPEDIPPSTNDPTAPSTEGRIESPQPPKRKTQQVRRNITTKTGRKRTPTNIPSVPIDGI 462

Query: 127 SFHHEENVQKWKYVVQR 143
           SFHHEENVQ+WKY+VQR
Sbjct: 463 SFHHEENVQRWKYMVQR 479

[Close]

BLAST of PI0026710 vs. NCBI nr
Match: KAA0066728.1 (uncharacterized protein E6C27_scaffold271G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 6.4e-11
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 67  IPPSFEPDCSDEPSIPSHESSVSVPKSPIVPPNK-PHIITTKAGRKKLPPNIPYVPFDGI 126
           IPP   P  +++P+ PS E  +  P+ P     +    ITTK GRK+ P NIP VP DGI
Sbjct: 426 IPPEDIPPSTNDPTAPSTEGRIESPQPPKRKTQQVRRNITTKTGRKRTPTNIPSVPIDGI 485

Query: 127 SFHHEENVQKWKYVVQR 143
           SFHHEENVQ+WKY+VQR
Sbjct: 486 SFHHEENVQRWKYMVQR 502

[Close]

BLAST of PI0026710 vs. NCBI nr
Match: KAA0045208.1 (uncharacterized protein E6C27_scaffold30G002140 [Cucumis melo var. makuwa] >TYK19237.1 uncharacterized protein E5676_scaffold1493G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 8.4e-11
Identity = 41/80 (51.25%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 67  IPPSFEPDCSDEPSIPSHESSVSVPKSPIVPPNKPH----IITTKAGRKKLPPNIPYVPF 126
           IPP   P   D P  PS E     PK P  P  K       +TTK  RKK+P N+P+VP 
Sbjct: 11  IPPEDIPPPIDNPITPSSEGRPESPKGPKPPKRKTQQARKNVTTKISRKKIPVNVPFVPI 70

Query: 127 DGISFHHEENVQKWKYVVQR 143
           DGISFHHEE+VQ+WK+V+QR
Sbjct: 71  DGISFHHEESVQRWKFVMQR 90

The following BLAST results are available for this feature:

BLAST of PI0026710 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BS10	2.4e-11	52.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VJ79	2.4e-11	52.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DVV8	3.1e-11	53.25	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5A7VG44	3.1e-11	53.25	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3D6Q4	4.1e-11	51.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0026710 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00879.1	4.9e-11	52.50	uncharacterized protein E5676_scaffold602G00380 [Cucumis melo var. makuwa]	[more]
KAA0066406.1	4.9e-11	52.50	uncharacterized protein E6C27_scaffold21G004820 [Cucumis melo var. makuwa]	[more]
TYK27876.1	6.4e-11	53.25	uncharacterized protein E5676_scaffold384G00590 [Cucumis melo var. makuwa]	[more]
KAA0066728.1	6.4e-11	53.25	uncharacterized protein E6C27_scaffold271G00650 [Cucumis melo var. makuwa]	[more]
KAA0045208.1	8.4e-11	51.25	uncharacterized protein E6C27_scaffold30G002140 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of PI0026710 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026710.1	PI0026710.1	mRNA