PI0026705 (gene) Melon (PI 482460) v1

Overview


Name	PI0026705
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	F-box protein GID2-like
Location	chr07: 22748425 .. 22749554 (-)
RNA-Seq Expression	PI0026705
Synteny	PI0026705

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCGTGAAAACAAACAGGGGAAAAATTGGTGATAATGGGAAGAAGACACAAGGCGAAGACACAGTTGGTCAATTTGGAGAAAAAAGCATCCAAGTGCATTCAATTCTCATCTTGTCTTCTTCGTAAACCTTCAAAACTTATGCTTTAAGTCTTAACCACTCTTCCCCCAATTCCAAACCCAACTTTCGTTTTTTTTTTTTCATCCTCAATCCTCAATCTTCATTACCCAATTCCCGTTTCTTCCTTATCAATTCGATCCTTATTAAACCTCACCCACTATGCTTTCTCTCAATTTCTCCATTTCTTTTCACTAAAAACGGGATTTTGCGATTTGTTTTGGAGATGAAGCGAGTTGTTCCAGATGGGGTTGGGGATCGGAAGATGGGGAAGAAACCCAAGGCGGAAACCCAAGATTTTACCCGAGGAGGAGGAGGAGGAGAAGACTGCTCCGACAAGACTGGATTTATGAATTTGGATGATAATTTGTTGTTTGAGGTTTTTAAACATGTGGATGCTAGGACTTTGGCTATGGCGGGGTGTGTGAGCAAGCAATGGCATAAAACCGCCGAAGATGAGCGTCTTTGGGAGCTGATCTGCACCAGACACTGGGCTAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTCGCCCTCGGCGGCTTCCGTCGACTTCACTCCCTCTTCATCTGGCCTCTCACCAAGCCCCAATCCTCCTCCTCCTCTTCCTCCTCCTTATCTTCCTCCACATCTTCATCCACACCCTCTTCCTCGTCCGCATCTTGGTCTCCGTTTCCGGCAATGATTGGATCGAAACCGCCGGCCCGGTGGGGGAAAGATGAGGTCCATCTCTCACTTTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGAGTGGCTTGGGATCCATATTCAGTCCATTTAACCATTTTCCTTTTTAAATTTGGCAATTGAAATTTCCCTTTCAATGTGTTTTGGATTTGATCTGGGGTTTGTTCTTTTTTGTTCTTTTTTCCTTCTTTCTTTCCATTTGGTTAATTAGATCTGTATCTGATTTGGGTGTGTACTTTATAAAACCACATAAATTAAATCTCTAACTTTGTTT

mRNA sequence

GTCCGTGAAAACAAACAGGGGAAAAATTGGTGATAATGGGAAGAAGACACAAGGCGAAGACACAGTTGGTCAATTTGGAGAAAAAAGCATCCAAGTGCATTCAATTCTCATCTTGTCTTCTTCGTAAACCTTCAAAACTTATGCTTTAAGTCTTAACCACTCTTCCCCCAATTCCAAACCCAACTTTCGTTTTTTTTTTTTCATCCTCAATCCTCAATCTTCATTACCCAATTCCCGTTTCTTCCTTATCAATTCGATCCTTATTAAACCTCACCCACTATGCTTTCTCTCAATTTCTCCATTTCTTTTCACTAAAAACGGGATTTTGCGATTTGTTTTGGAGATGAAGCGAGTTGTTCCAGATGGGGTTGGGGATCGGAAGATGGGGAAGAAACCCAAGGCGGAAACCCAAGATTTTACCCGAGGAGGAGGAGGAGGAGAAGACTGCTCCGACAAGACTGGATTTATGAATTTGGATGATAATTTGTTGTTTGAGGTTTTTAAACATGTGGATGCTAGGACTTTGGCTATGGCGGGGTGTGTGAGCAAGCAATGGCATAAAACCGCCGAAGATGAGCGTCTTTGGGAGCTGATCTGCACCAGACACTGGGCTAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTCGCCCTCGGCGGCTTCCGTCGACTTCACTCCCTCTTCATCTGGCCTCTCACCAAGCCCCAATCCTCCTCCTCCTCTTCCTCCTCCTTATCTTCCTCCACATCTTCATCCACACCCTCTTCCTCGTCCGCATCTTGGTCTCCGTTTCCGGCAATGATTGGATCGAAACCGCCGGCCCGGTGGGGGAAAGATGAGGTCCATCTCTCACTTTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGAGTGGCTTGGGATCCATATTCAGTCCATTTAACCATTTTCCTTTTTAAATTTGGCAATTGAAATTTCCCTTTCAATGTGTTTTGGATTTGATCTGGGGTTTGTTCTTTTTTGTTCTTTTTTCCTTCTTTCTTTCCATTTGGTTAATTAGATCTGTATCTGATTTGGGTGTGTACTTTATAAAACCACATAAATTAAATCTCTAACTTTGTTT

Coding sequence (CDS)

ATGAAGCGAGTTGTTCCAGATGGGGTTGGGGATCGGAAGATGGGGAAGAAACCCAAGGCGGAAACCCAAGATTTTACCCGAGGAGGAGGAGGAGGAGAAGACTGCTCCGACAAGACTGGATTTATGAATTTGGATGATAATTTGTTGTTTGAGGTTTTTAAACATGTGGATGCTAGGACTTTGGCTATGGCGGGGTGTGTGAGCAAGCAATGGCATAAAACCGCCGAAGATGAGCGTCTTTGGGAGCTGATCTGCACCAGACACTGGGCTAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTCGCCCTCGGCGGCTTCCGTCGACTTCACTCCCTCTTCATCTGGCCTCTCACCAAGCCCCAATCCTCCTCCTCCTCTTCCTCCTCCTTATCTTCCTCCACATCTTCATCCACACCCTCTTCCTCGTCCGCATCTTGGTCTCCGTTTCCGGCAATGATTGGATCGAAACCGCCGGCCCGGTGGGGGAAAGATGAGGTCCATCTCTCACTTTCCCTTCTCTCAATTCGTTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGATGA

Protein sequence

MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDARTLAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSLSSSTSSSTPSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

Homology

[Close]

BLAST of PI0026705 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.9e-45
Identity = 89/153 (58.17%), Postives = 105/153 (68.63%), Query Frame = 0


Query: 37  DKTGFMNLDDNLLFEVFKHVDARTLAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGN 96
           ++ GF NLD+NL++EV KHVDA+TLAM+ CVSK WHKTA+DERLWELICTRHW N GCG 
Sbjct: 28  EEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQ 87

Query: 97  QQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSLSSSTSSSTPSSSSASWSPFPAMI 156
            QLRSVVLALGGFRRLHSL++WPL+KP                                 
Sbjct: 88  NQLRSVVLALGGFRRLHSLYLWPLSKP--------------------------------- 145

Query: 157 GSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR 190
              P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Sbjct: 148 --NPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of PI0026705 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-23
Identity = 61/142 (42.96%), Postives = 82/142 (57.75%), Query Frame = 0


Query: 43  NLDDNLLFEVFKHVDARTLAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV 102
           +L ++L+FEV +  +ARTLA A CVS+ W + AEDERLWE  C R WAN G   +QLR+V
Sbjct: 75  DLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAV 134

Query: 103 VLALGGFRRLHSLFIWPLTKPQSSSSSSSSLSSSTSSSTPSSSSASWSPFPAMIGSKPPA 162
           VL+LGGFRRLH+++I PL                  +  P                +PP 
Sbjct: 135 VLSLGGFRRLHAVYIRPL--------------QWRGAGVPRQQGR----------RQPPV 192

Query: 163 RWGKDEVHLSLSLLSIRYYEKM 185
           R G+D+V LSLSL SI +++ M
Sbjct: 195 RLGRDQVQLSLSLFSIGFFQNM 192

[Close]

BLAST of PI0026705 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-09
Identity = 39/143 (27.27%), Postives = 63/143 (44.06%), Query Frame = 0


Query: 42  MNLDDNLLFEVFKHVDARTLAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 101
           +N   ++L E+ + +D  +L  A CV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 102 VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSLSSSTSSSTPSSSSASWSPFPAMIGSKPP 161
           VV ALGG+R L+ L I P                                   ++   P 
Sbjct: 88  VVSALGGYRCLYFLCIRP-----------------------------------VLARLPK 133

Query: 162 ARWGKDEVHLSLSLLSIRYYEKM 185
             W +D++ LSLSL  + YYE++
Sbjct: 148 LLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of PI0026705 vs. ExPASy TrEMBL
Match: A0A0A0L2H5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.9e-97
Identity = 185/191 (96.86%), Postives = 186/191 (97.38%), Query Frame = 0


Query: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVVPDGVGDRKMGKKPKAETQDFTR GGGGEDCSDKTGFMNLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVPDGVGDRKMGKKPKAETQDFTR-GGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMA CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSLSSSTSSSTPSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180
           TKPQSSSSSSSS SSS+SSS  SSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY
Sbjct: 121 TKPQSSSSSSSSSSSSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180

Query: 181 YEKMNFSNRGR 192
           YEKMNFSNRGR
Sbjct: 181 YEKMNFSNRGR 190

[Close]

BLAST of PI0026705 vs. ExPASy TrEMBL
Match: A0A5A7VFE5 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002980 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.0e-94
Identity = 184/192 (95.83%), Postives = 184/192 (95.83%), Query Frame = 0


Query: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVV DGVGDRKMGKKPKAETQDFTR  GGGEDCSDKTGFMNLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVSDGVGDRKMGKKPKAETQDFTR--GGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMA CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSLS-SSTSSSTPSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSSSSSSSS S SSTSSS  SSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 192
           YYEKMNFSNRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of PI0026705 vs. ExPASy TrEMBL
Match: A0A1S3BV18 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.0e-94
Identity = 184/192 (95.83%), Postives = 184/192 (95.83%), Query Frame = 0


Query: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVV DGVGDRKMGKKPKAETQDFTR  GGGEDCSDKTGFMNLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVSDGVGDRKMGKKPKAETQDFTR--GGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMA CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSLS-SSTSSSTPSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSSSSSSSS S SSTSSS  SSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 192
           YYEKMNFSNRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of PI0026705 vs. ExPASy TrEMBL
Match: A0A6J1ILD7 (F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.7e-82
Identity = 162/191 (84.82%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVVP+G GDRK  KKP+A + D   GG      SDKTGF+NLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG-----VSDKTGFLNLDDNLLFEVFKHVDART 60

Query: 61  LAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMA CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSLSSSTSSSTPSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180
           TKPQSSSSSSSS SSSTSSS+P      WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY
Sbjct: 121 TKPQSSSSSSSSTSSSTSSSSP------WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180

Query: 181 YEKMNFSNRGR 192
           YEKMNF +RGR
Sbjct: 181 YEKMNFGSRGR 180

[Close]

BLAST of PI0026705 vs. ExPASy TrEMBL
Match: A0A6J1FA22 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.3e-80
Identity = 160/191 (83.77%), Postives = 166/191 (86.91%), Query Frame = 0


Query: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVVP+G GDRK  KKP+A + D   GG      SDKTGFMNLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG-----VSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMA CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSLSSSTSSSTPSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180
           TKPQSSSSS+   SSS SSS+P      WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY
Sbjct: 121 TKPQSSSSST---SSSASSSSP------WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 177

Query: 181 YEKMNFSNRGR 192
           YEKMNFS+RGR
Sbjct: 181 YEKMNFSSRGR 177

[Close]

BLAST of PI0026705 vs. NCBI nr
Match: XP_011654137.1 (F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230 [Cucumis sativus])

HSP 1 Score: 364.4 bits (934), Expect = 6.1e-97
Identity = 185/191 (96.86%), Postives = 186/191 (97.38%), Query Frame = 0


Query: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVVPDGVGDRKMGKKPKAETQDFTR GGGGEDCSDKTGFMNLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVPDGVGDRKMGKKPKAETQDFTR-GGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMA CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSLSSSTSSSTPSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180
           TKPQSSSSSSSS SSS+SSS  SSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY
Sbjct: 121 TKPQSSSSSSSSSSSSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180

Query: 181 YEKMNFSNRGR 192
           YEKMNFSNRGR
Sbjct: 181 YEKMNFSNRGR 190

[Close]

BLAST of PI0026705 vs. NCBI nr
Match: XP_008452610.1 (PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GID2-like [Cucumis melo var. makuwa] >TYK20166.1 F-box protein GID2-like [Cucumis melo var. makuwa])

HSP 1 Score: 355.9 bits (912), Expect = 2.2e-94
Identity = 184/192 (95.83%), Postives = 184/192 (95.83%), Query Frame = 0


Query: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVV DGVGDRKMGKKPKAETQDFTR  GGGEDCSDKTGFMNLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVSDGVGDRKMGKKPKAETQDFTR--GGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMA CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSLS-SSTSSSTPSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180
           TKPQSSSSSSSS S SSTSSS  SSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR
Sbjct: 121 TKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIR 180

Query: 181 YYEKMNFSNRGR 192
           YYEKMNFSNRGR
Sbjct: 181 YYEKMNFSNRGR 190

[Close]

BLAST of PI0026705 vs. NCBI nr
Match: XP_038900230.1 (F-box protein GID2 [Benincasa hispida])

HSP 1 Score: 327.8 bits (839), Expect = 6.3e-86
Identity = 170/190 (89.47%), Postives = 172/190 (90.53%), Query Frame = 0


Query: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVVPDG GDRK GKKP+AETQD      GG D SD+TGFMNLDDNLLFEVFKHVDART
Sbjct: 1   MKRVVPDGDGDRKTGKKPRAETQDC----AGGGDPSDRTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMA CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSLSSSTSSSTPSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180
           TKPQSSSS     SSSTSSS  SSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY
Sbjct: 121 TKPQSSSS-----SSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180

Query: 181 YEKMNFSNRG 191
           YEKMNFSNRG
Sbjct: 181 YEKMNFSNRG 181

[Close]

BLAST of PI0026705 vs. NCBI nr
Match: XP_023536623.1 (F-box protein GID2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 316.6 bits (810), Expect = 1.4e-82
Identity = 163/191 (85.34%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVVP+G GDRK  KKP+A + D   GG      SDKTGFMNLDDNLLFEVFKHVDA T
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG-----VSDKTGFMNLDDNLLFEVFKHVDATT 60

Query: 61  LAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMA CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSLSSSTSSSTPSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180
           TKPQSSSSSSSS SSS+S+S+ +SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY
Sbjct: 121 TKPQSSSSSSSSSSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180

Query: 181 YEKMNFSNRGR 192
           YEKMNFS+RGR
Sbjct: 181 YEKMNFSSRGR 186

[Close]

BLAST of PI0026705 vs. NCBI nr
Match: KAG6591404.1 (F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315.1 bits (806), Expect = 4.2e-82
Identity = 165/191 (86.39%), Postives = 171/191 (89.53%), Query Frame = 0


Query: 1   MKRVVPDGVGDRKMGKKPKAETQDFTRGGGGGEDCSDKTGFMNLDDNLLFEVFKHVDART 60
           MKRVVP+G GDRK  KKP+A + D   GG      SDKTGFMNLDDNLLFEVFKHVDA T
Sbjct: 1   MKRVVPEGKGDRKTEKKPRAVSHDCDGGG-----VSDKTGFMNLDDNLLFEVFKHVDATT 60

Query: 61  LAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMA CVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSSSSSSSLSSSTSSSTPSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180
           TKPQSSSSSSSS SSSTSSS  +SSS+ WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY
Sbjct: 121 TKPQSSSSSSSSSSSSTSSS--ASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRY 180

Query: 181 YEKMNFSNRGR 192
           YEKMNFS+RGR
Sbjct: 181 YEKMNFSSRGR 184

[Close]

BLAST of PI0026705 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-46
Identity = 89/153 (58.17%), Postives = 105/153 (68.63%), Query Frame = 0


Query: 37  DKTGFMNLDDNLLFEVFKHVDARTLAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGN 96
           ++ GF NLD+NL++EV KHVDA+TLAM+ CVSK WHKTA+DERLWELICTRHW N GCG 
Sbjct: 28  EEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQ 87

Query: 97  QQLRSVVLALGGFRRLHSLFIWPLTKPQSSSSSSSSLSSSTSSSTPSSSSASWSPFPAMI 156
            QLRSVVLALGGFRRLHSL++WPL+KP                                 
Sbjct: 88  NQLRSVVLALGGFRRLHSLYLWPLSKP--------------------------------- 145

Query: 157 GSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR 190
              P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Sbjct: 148 --NPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of PI0026705 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-10
Identity = 39/143 (27.27%), Postives = 63/143 (44.06%), Query Frame = 0


Query: 42  MNLDDNLLFEVFKHVDARTLAMAGCVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 101
           +N   ++L E+ + +D  +L  A CV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 102 VVLALGGFRRLHSLFIWPLTKPQSSSSSSSSLSSSTSSSTPSSSSASWSPFPAMIGSKPP 161
           VV ALGG+R L+ L I P                                   ++   P 
Sbjct: 88  VVSALGGYRCLYFLCIRP-----------------------------------VLARLPK 133

Query: 162 ARWGKDEVHLSLSLLSIRYYEKM 185
             W +D++ LSLSL  + YYE++
Sbjct: 148 LLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of PI0026705 vs. TAIR 10
Match: AT1G21760.1 (F-box protein 7 )

HSP 1 Score: 43.9 bits (102), Expect = 1.7e-04
Identity = 18/50 (36.00%), Postives = 23/50 (46.00%), Query Frame = 0


Query: 44  LDDNLLFEVFKHVDARTLAMAGCVSKQWHKTAEDERLWELICTRHWANTG 94
           L D LLFEVF  +    L  A CV ++W  T  +   W   C + W   G
Sbjct: 62  LPDELLFEVFARMMPYDLGRASCVCRKWRYTVRNPMFWRNACLKAWQTAG 111

The following BLAST results are available for this feature:

BLAST of PI0026705 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	1.9e-45	58.17	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	1.6e-23	42.96	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	2.9e-09	27.27	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of PI0026705 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2H5	2.9e-97	96.86	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 ...	[more]
A0A5A7VFE5	1.0e-94	95.83	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BV18	1.0e-94	95.83	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1	[more]
A0A6J1ILD7	2.7e-82	84.82	F-box protein GID2-like OS=Cucurbita maxima OX=3661 GN=LOC111477283 PE=4 SV=1	[more]
A0A6J1FA22	4.3e-80	83.77	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1	[more]

BLAST of PI0026705 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654137.1	6.1e-97	96.86	F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230...	[more]
XP_008452610.1	2.2e-94	95.83	PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GI...	[more]
XP_038900230.1	6.3e-86	89.47	F-box protein GID2 [Benincasa hispida]	[more]
XP_023536623.1	1.4e-82	85.34	F-box protein GID2-like [Cucurbita pepo subsp. pepo]	[more]
KAG6591404.1	4.2e-82	86.39	F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of PI0026705 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	1.4e-46	58.17	F-box family protein	[more]
AT5G48170.1	2.1e-10	27.27	F-box family protein	[more]
AT1G21760.1	1.7e-04	36.00	F-box protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 47..87 e-value: 1.1E-6 score: 28.5
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 38..84 score: 8.967582
None	No IPR available	GENE3D	1.20.1280.50		coord: 33..139 e-value: 1.8E-11 score: 45.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 33..186
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 33..186
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 33..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026705.1	PI0026705.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009845	seed germination
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding