PI0026696 (gene) Melon (PI 482460) v1

Overview


Name	PI0026696
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Prolyl-tRNA synthetase
Location	chr11: 8383024 .. 8383582 (-)
RNA-Seq Expression	PI0026696
Synteny	PI0026696

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATAAGTTTTCTAAAATTTGAAGTATTTAATATATTTGTTGTATTCCAACCTCTATCATTTACTAGTGTATTTCTAAAGGATGATGGTTTCATTGTTATGTTCCTCCAAGAGGTCGAGAAGGATGTGAAAACAAGGACTAAAGGTGAAGTGGGAGCAGCGAAAACCTTATGTTCCCCGTTCGAGCAGCCTCCCCTTCCAGAAGGTTACTAAATCCATGTCCAAATTTGTATTCATTTTACATGTTAACGAGTTTATATCAACTTGTGGGATCTTGGGAAACTTGATGGCAACTCTTTTGGTTCCTTGAATTTACTATGATGTTTGTGTTCAGGTACCAAATGTTTTGCATCTGGGAAGCCTGCAAAGAAATGGAGCTATTGGGGCCGGAGCTACTAAGCTAATCAGCTCGTATTTTTCTCCTACGCTTTGCCTCGCGTTACACAATGTCAGGAAATCAGCAAGAGTTTTGAGTACAGGGGCATTCAATTCAGTCAATTCCGAGTTCATCATAATTCCCAAAAGTTTTGACTTGTGTGATTTTTTAAAAAACTAA

mRNA sequence

ATGGAGATAAGTTTTCTAAAATTTGAAGTATTTAATATATTTGTTGTATTCCAACCTCTATCATTTACTAGTGTATTTCTAAAGGATGATGGTTTCATTGTTATGTTCCTCCAAGAGGTCGAGAAGGATGTGAAAACAAGGACTAAAGGTGAAGTGGGAGCAGCGAAAACCTTATGTTCCCCGTTCGAGCAGCCTCCCCTTCCAGAAGCTATTGGGGCCGGAGCTACTAAGCTAATCAGCTCGTATTTTTCTCCTACGCTTTGCCTCGCGTTACACAATGTCAGGAAATCAGCAAGAGTTTTGAGTACAGGGGCATTCAATTCAGTCAATTCCGAGTTCATCATAATTCCCAAAAGTTTTGACTTGTGTGATTTTTTAAAAAACTAA

Coding sequence (CDS)

ATGGAGATAAGTTTTCTAAAATTTGAAGTATTTAATATATTTGTTGTATTCCAACCTCTATCATTTACTAGTGTATTTCTAAAGGATGATGGTTTCATTGTTATGTTCCTCCAAGAGGTCGAGAAGGATGTGAAAACAAGGACTAAAGGTGAAGTGGGAGCAGCGAAAACCTTATGTTCCCCGTTCGAGCAGCCTCCCCTTCCAGAAGCTATTGGGGCCGGAGCTACTAAGCTAATCAGCTCGTATTTTTCTCCTACGCTTTGCCTCGCGTTACACAATGTCAGGAAATCAGCAAGAGTTTTGAGTACAGGGGCATTCAATTCAGTCAATTCCGAGTTCATCATAATTCCCAAAAGTTTTGACTTGTGTGATTTTTTAAAAAACTAA

Protein sequence

MEISFLKFEVFNIFVVFQPLSFTSVFLKDDGFIVMFLQEVEKDVKTRTKGEVGAAKTLCSPFEQPPLPEAIGAGATKLISSYFSPTLCLALHNVRKSARVLSTGAFNSVNSEFIIIPKSFDLCDFLKN

Homology

[Close]

BLAST of PI0026696 vs. ExPASy Swiss-Prot
Match: Q9M1R2 (Proline--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At3g62120 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.7e-08
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 38  QEVEKDVKTRTKGEVGAAKTLCSPFEQPPLPE 70
           +EVE+DVK RTKGE GAAKTLCSPF+QP LPE
Sbjct: 478 EEVERDVKARTKGETGAAKTLCSPFDQPELPE 509

[Close]

BLAST of PI0026696 vs. ExPASy TrEMBL
Match: A0A0A0KJM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G126720 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-17
Identity = 58/91 (63.74%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 34  VMFLQEVEKDVKTRTKGEVGAAKTLCSPFEQPPLPEA------IGAGATKLISSYFSPTL 93
           VM LQEVEKDVKTRTKGE+GAAKTLCSPFEQPPLPEA      +G    KLISS FSPTL
Sbjct: 6   VMLLQEVEKDVKTRTKGEMGAAKTLCSPFEQPPLPEACKEMELLGPKLLKLISSLFSPTL 65

Query: 94  CLALHNVRKSARVLSTGAFNSVNSEFIIIPK 119
            L +    KSARV+  G       EFIII +
Sbjct: 66  RL-VKRCWKSARVVEFGGIRFSRVEFIIISR 95

[Close]

BLAST of PI0026696 vs. ExPASy TrEMBL
Match: A0A1S4DS87 (Prolyl-tRNA synthetase OS=Cucumis melo OX=3656 GN=LOC103503756 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.5e-08
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 38  QEVEKDVKTRTKGEVGAAKTLCSPFEQPPLPE 70
           +EVEKDVKTRTKGE+GAAKTLCSPFEQPPLPE
Sbjct: 459 EEVEKDVKTRTKGEMGAAKTLCSPFEQPPLPE 490

[Close]

BLAST of PI0026696 vs. ExPASy TrEMBL
Match: A0A5A7U355 (Prolyl-tRNA synthetase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00130 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.5e-08
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 38  QEVEKDVKTRTKGEVGAAKTLCSPFEQPPLPE 70
           +EVEKDVKTRTKGE+GAAKTLCSPFEQPPLPE
Sbjct: 460 EEVEKDVKTRTKGEMGAAKTLCSPFEQPPLPE 491

[Close]

BLAST of PI0026696 vs. ExPASy TrEMBL
Match: A0A1S3CR78 (Prolyl-tRNA synthetase OS=Cucumis melo OX=3656 GN=LOC103503756 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.5e-08
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 38  QEVEKDVKTRTKGEVGAAKTLCSPFEQPPLPE 70
           +EVEKDVKTRTKGE+GAAKTLCSPFEQPPLPE
Sbjct: 409 EEVEKDVKTRTKGEMGAAKTLCSPFEQPPLPE 440

[Close]

BLAST of PI0026696 vs. ExPASy TrEMBL
Match: A0A7J0D9U2 (Prolyl-tRNA synthetase OS=Actinidia rufa OX=165716 GN=Acr_00g0012710 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.5e-08
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = 0


Query: 38  QEVEKDVKTRTKGEVGAAKTLCSPFEQPPLPEAIGAGATKLISSYFSPTLCLALHNVRKS 97
           +EVEKDVK RTKGE+GAAKTLCSPF+QP L E    G   ++ S+       +L   R+ 
Sbjct: 549 EEVEKDVKARTKGEIGAAKTLCSPFDQPALDE----GNIAVLDSHLEQKFSQSLQASRRG 608

Query: 98  ARV--LSTGAFNSVNSEFIIIPKSFDLCDFL 127
           + V  L T +FNS N  +  +     L DF+
Sbjct: 609 SAVKGLVTWSFNSSNMYYRRVLSEDYLLDFV 635

[Close]

BLAST of PI0026696 vs. NCBI nr
Match: KGN50982.2 (hypothetical protein Csa_004679 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 6.0e-08
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 38  QEVEKDVKTRTKGEVGAAKTLCSPFEQPPLPE 70
           QEVEKDVKTRTKGE+GAAKTLCSPFEQPPLPE
Sbjct: 285 QEVEKDVKTRTKGEMGAAKTLCSPFEQPPLPE 316

[Close]

BLAST of PI0026696 vs. NCBI nr
Match: XP_008466343.1 (PREDICTED: proline--tRNA ligase, cytoplasmic isoform X4 [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 38  QEVEKDVKTRTKGEVGAAKTLCSPFEQPPLPE 70
           +EVEKDVKTRTKGE+GAAKTLCSPFEQPPLPE
Sbjct: 409 EEVEKDVKTRTKGEMGAAKTLCSPFEQPPLPE 440

[Close]

BLAST of PI0026696 vs. NCBI nr
Match: XP_008466310.1 (PREDICTED: proline--tRNA ligase, cytoplasmic isoform X1 [Cucumis melo] >XP_008466350.1 PREDICTED: proline--tRNA ligase, cytoplasmic isoform X1 [Cucumis melo] >XP_016898851.1 PREDICTED: proline--tRNA ligase, cytoplasmic isoform X1 [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 38  QEVEKDVKTRTKGEVGAAKTLCSPFEQPPLPE 70
           +EVEKDVKTRTKGE+GAAKTLCSPFEQPPLPE
Sbjct: 459 EEVEKDVKTRTKGEMGAAKTLCSPFEQPPLPE 490

[Close]

BLAST of PI0026696 vs. NCBI nr
Match: KAA0050272.1 (proline--tRNA ligase [Cucumis melo var. makuwa] >TYJ98135.1 proline--tRNA ligase [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 38  QEVEKDVKTRTKGEVGAAKTLCSPFEQPPLPE 70
           +EVEKDVKTRTKGE+GAAKTLCSPFEQPPLPE
Sbjct: 460 EEVEKDVKTRTKGEMGAAKTLCSPFEQPPLPE 491

[Close]

BLAST of PI0026696 vs. NCBI nr
Match: GFS30580.1 (class II aaRS and biotin synthetases superfamily protein [Actinidia rufa])

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-07
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = 0


Query: 38  QEVEKDVKTRTKGEVGAAKTLCSPFEQPPLPEAIGAGATKLISSYFSPTLCLALHNVRKS 97
           +EVEKDVK RTKGE+GAAKTLCSPF+QP L E    G   ++ S+       +L   R+ 
Sbjct: 549 EEVEKDVKARTKGEIGAAKTLCSPFDQPALDE----GNIAVLDSHLEQKFSQSLQASRRG 608

Query: 98  ARV--LSTGAFNSVNSEFIIIPKSFDLCDFL 127
           + V  L T +FNS N  +  +     L DF+
Sbjct: 609 SAVKGLVTWSFNSSNMYYRRVLSEDYLLDFV 635

[Close]

BLAST of PI0026696 vs. TAIR 10
Match: AT3G62120.1 (Class II aaRS and biotin synthetases superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-09
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 38  QEVEKDVKTRTKGEVGAAKTLCSPFEQPPLPE 70
           +EVE+DVK RTKGE GAAKTLCSPF+QP LPE
Sbjct: 478 EEVERDVKARTKGETGAAKTLCSPFDQPELPE 509

[Close]

BLAST of PI0026696 vs. TAIR 10
Match: AT3G62120.2 (Class II aaRS and biotin synthetases superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-09
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 38  QEVEKDVKTRTKGEVGAAKTLCSPFEQPPLPE 70
           +EVE+DVK RTKGE GAAKTLCSPF+QP LPE
Sbjct: 478 EEVERDVKARTKGETGAAKTLCSPFDQPELPE 509

[Close]

BLAST of PI0026696 vs. TAIR 10
Match: AT5G10880.1 (tRNA synthetase-related / tRNA ligase-related )

HSP 1 Score: 42.7 bits (99), Expect = 2.5e-04
Identity = 22/36 (61.11%), Postives = 25/36 (69.44%), Query Frame = 0


Query: 39  EVEKDVKTRTKGEV-----GAAKTLCSPFEQPPLPE 70
           EVEKDVK RT+G+      G AKTLC+P EQP L E
Sbjct: 253 EVEKDVKRRTRGDETGGGGGGAKTLCTPLEQPELGE 288

The following BLAST results are available for this feature:

BLAST of PI0026696 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1R2	3.7e-08	81.25	Proline--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At3g62120 P...	[more]

BLAST of PI0026696 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJM1	1.5e-17	63.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G126720 PE=4 SV=1	[more]
A0A1S4DS87	6.5e-08	93.75	Prolyl-tRNA synthetase OS=Cucumis melo OX=3656 GN=LOC103503756 PE=3 SV=1	[more]
A0A5A7U355	6.5e-08	93.75	Prolyl-tRNA synthetase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S3CR78	6.5e-08	93.75	Prolyl-tRNA synthetase OS=Cucumis melo OX=3656 GN=LOC103503756 PE=3 SV=1	[more]
A0A7J0D9U2	8.5e-08	43.96	Prolyl-tRNA synthetase OS=Actinidia rufa OX=165716 GN=Acr_00g0012710 PE=3 SV=1	[more]

BLAST of PI0026696 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50982.2	6.0e-08	96.88	hypothetical protein Csa_004679 [Cucumis sativus]	[more]
XP_008466343.1	1.3e-07	93.75	PREDICTED: proline--tRNA ligase, cytoplasmic isoform X4 [Cucumis melo]	[more]
XP_008466310.1	1.3e-07	93.75	PREDICTED: proline--tRNA ligase, cytoplasmic isoform X1 [Cucumis melo] >XP_00846...	[more]
KAA0050272.1	1.3e-07	93.75	proline--tRNA ligase [Cucumis melo var. makuwa] >TYJ98135.1 proline--tRNA ligase...	[more]
GFS30580.1	1.7e-07	43.96	class II aaRS and biotin synthetases superfamily protein [Actinidia rufa]	[more]

BLAST of PI0026696 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62120.1	2.6e-09	81.25	Class II aaRS and biotin synthetases superfamily protein	[more]
AT3G62120.2	2.6e-09	81.25	Class II aaRS and biotin synthetases superfamily protein	[more]
AT5G10880.1	2.5e-04	61.11	tRNA synthetase-related / tRNA ligase-related	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026696.1	PI0026696.1	mRNA