Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTGTTTCTCAAGTCTATTGATAGCAGGACTTGGAAAGCAGTTGTGACTTGTTGGGCGCATCCCACTGTGACCGATGCTGAAGGAAAAGTGACACTTATACCAGAGTTGCTATGGAATTAATGCTGAGGATGAGGCTTTTTTCGGTAATTCTTGTGCCCTAAATGCAACCTTTAATGGTGTCGATCAAAATGTGTTTAAGTTAATAAACTCTAGTACGTCGGCTAAGGAAGCATACAGAATTTTGGATGTAGCTTATGAAGGAACATCTAAAGTGAATATGCCCCGACTTCAAATCTTGACTTCTAAGTTTAAGTCTCTTAAGATGAACGATGAGGATACTATCGCTAAGTATAATGTACATGTTCTAGATGTCGATAATGAATCATTTGCTCTCAGGGAAAAGATTGTTGAGCCAAAGCTTGTTAGAAAGGTGTTCCGTTCTCTACCTCGATGTTTTGATTTGAAGGTCATTGTGATTGAGGAAACAAATGATATTACCACTTTGAAGCTTGATGAGTTGTTTGGGTTTTTACGAATGTTCAAACTCACCTTTGATGATAAGGGTGATAAAAAGGGAAAAGGTTTGGCCCTTCATTCTGTCGACGATAACGAACATTATCAAGGTAAAAACAAGGATTGTGATAAAAATCTATAGCCTTGCTGACAAAGTAGTTCACCAAGGTTGTGAGTCGGTTCAACAAGCGACCTAGTATAATAGGGAACACGGTAACTATAACAGTTCAAACTTTGCTACAAATCTTACAGGCGGATGTAGAGAGAATGAAAAAAGTTTAAACAATAGTAACCCTAAGGTTGATAGAAGTTTCAAATGTCGTGAGTGTGAAGTTTTTGGACATTATCAAACTGAGTGTCCAAGCTTCCTTAAGAGGAAAAGGAAGAGTCTGGCTGTAACTTTTTATGACGATGAGTTAATTGCAAGTAGTGACTCTAAAGAAGATGGTCGAGCTTTGCTCGGGTGTATCATTGAAAGAGTAGTCATAAAGGCTGATGATCTTAAGTCATAG
mRNA sequence
ATGATTGTGTTTCTCAAGTCTATTGATAGCAGGACTTGGAAAGCAGTTGTGACTTGTTGGGCGCATCCCACTGTGACCGATGCTGAAGGAAAAAGTTGCTATGGAATTAATGCTGAGGATGAGGCTTTTTTCGGTAATTCTTGTGCCCTAAATGCAACCTTTAATGGTGTCGATCAAAATGTGTTTAAGTTAATAAACTCTAGTACGTCGGCTAAGGAAGCATACAGAATTTTGGATGTAGCTTATGAAGGAACATCTAAAGTGAATATGCCCCGACTTCAAATCTTGACTTCTAAGTTTAAGTCTCTTAAGATGAACGATGAGGATACTATCGCTAAGTATAATGTACATGTTCTAGATGTCGATAATGAATCATTTGCTCTCAGGGAAAAGATTGTTGAGCCAAAGCTTGTTAGAAAGGTGTTCCGTTCTCTACCTCGATGTTTTGATTTGAAGGTCATTGTGATTGAGGAAACAAATGATATTACCACTTTGAAGCTTGATGAGTTGTTTGGGTTTTTACGAATGTTCAAACTCACCTTTGATGATAAGGGTGATAAAAAGGGAAAAGGTTTGGCCCTTCATTCTGTCGACGATAACGAACATTATCAAGGCGGATGTAGAGAGAATGAAAAAAGTTTAAACAATAGTAACCCTAAGGTTGATAGAAGTTTCAAATGTCGTGAGTGTGAAGTTTTTGGACATTATCAAACTGAGTGTCCAAGCTTCCTTAAGAGGAAAAGGAAGAGTCTGGCTGTAACTTTTTATGACGATGAGTTAATTGCAAGTAGTGACTCTAAAGAAGATGGTCGAGCTTTGCTCGGGTGTATCATTGAAAGAGTAGTCATAAAGGCTGATGATCTTAAGTCATAG
Coding sequence (CDS)
ATGATTGTGTTTCTCAAGTCTATTGATAGCAGGACTTGGAAAGCAGTTGTGACTTGTTGGGCGCATCCCACTGTGACCGATGCTGAAGGAAAAAGTTGCTATGGAATTAATGCTGAGGATGAGGCTTTTTTCGGTAATTCTTGTGCCCTAAATGCAACCTTTAATGGTGTCGATCAAAATGTGTTTAAGTTAATAAACTCTAGTACGTCGGCTAAGGAAGCATACAGAATTTTGGATGTAGCTTATGAAGGAACATCTAAAGTGAATATGCCCCGACTTCAAATCTTGACTTCTAAGTTTAAGTCTCTTAAGATGAACGATGAGGATACTATCGCTAAGTATAATGTACATGTTCTAGATGTCGATAATGAATCATTTGCTCTCAGGGAAAAGATTGTTGAGCCAAAGCTTGTTAGAAAGGTGTTCCGTTCTCTACCTCGATGTTTTGATTTGAAGGTCATTGTGATTGAGGAAACAAATGATATTACCACTTTGAAGCTTGATGAGTTGTTTGGGTTTTTACGAATGTTCAAACTCACCTTTGATGATAAGGGTGATAAAAAGGGAAAAGGTTTGGCCCTTCATTCTGTCGACGATAACGAACATTATCAAGGCGGATGTAGAGAGAATGAAAAAAGTTTAAACAATAGTAACCCTAAGGTTGATAGAAGTTTCAAATGTCGTGAGTGTGAAGTTTTTGGACATTATCAAACTGAGTGTCCAAGCTTCCTTAAGAGGAAAAGGAAGAGTCTGGCTGTAACTTTTTATGACGATGAGTTAATTGCAAGTAGTGACTCTAAAGAAGATGGTCGAGCTTTGCTCGGGTGTATCATTGAAAGAGTAGTCATAAAGGCTGATGATCTTAAGTCATAG
Protein sequence
MIVFLKSIDSRTWKAVVTCWAHPTVTDAEGKSCYGINAEDEAFFGNSCALNATFNGVDQNVFKLINSSTSAKEAYRILDVAYEGTSKVNMPRLQILTSKFKSLKMNDEDTIAKYNVHVLDVDNESFALREKIVEPKLVRKVFRSLPRCFDLKVIVIEETNDITTLKLDELFGFLRMFKLTFDDKGDKKGKGLALHSVDDNEHYQGGCRENEKSLNNSNPKVDRSFKCRECEVFGHYQTECPSFLKRKRKSLAVTFYDDELIASSDSKEDGRALLGCIIERVVIKADDLKS
Homology
BLAST of PI0026563 vs. ExPASy TrEMBL
Match:
A0A5A7UZ92 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00320 PE=4 SV=1)
HSP 1 Score: 252.7 bits (644), Expect = 1.9e-63
Identity = 148/291 (50.86%), Postives = 188/291 (64.60%), Query Frame = 0
Query: 1 MIVFLKSIDSRTWKAVVTCWAHPTVTDAEGK-----SCYGINAEDEAFFGNSCALNATFN 60
MI FLKSID+++WKAVV HP D GK +AEDEA GNS LNA FN
Sbjct: 1 MIAFLKSIDNKSWKAVVFGLEHPIGIDVAGKVSLKPELTWSSAEDEAALGNSRVLNARFN 60
Query: 61 GVDQNVFKLINSSTSAKEAYRILDVAYEGTSKVNMPRLQILTSKFKSLKMNDEDTIAKYN 120
GVDQNVF+LIN+ T KEA+ IL VAYEGTSK M RLQILTS F++LKM+D++TI +N
Sbjct: 61 GVDQNVFRLINTCTFTKEAWNILQVAYEGTSKEKMLRLQILTSHFEALKMSDDETIVDFN 120
Query: 121 VHVLDVDNESFALREKIVEPKLVRKVFRSLPRCFDLKVIVIEETNDITTLKLDELFGFLR 180
V VLD+ NESFAL EK+ + KLVRKV RSLP+ F++KV I+E ND+TT KLD LFG LR
Sbjct: 121 VRVLDIANESFALGEKMSKTKLVRKVLRSLPQRFNMKVTAIKEANDVTTKKLDVLFGSLR 180
Query: 181 MFKLTFDDKGDKKGKGLAL--------HSVDDNEHYQGGCRENEKSLNNSNPKVDRSFKC 240
F+L + K G+ +++ N + R+ E L + N + DRS +C
Sbjct: 181 TFELNMGEGNSKNKSGITFLSNSSSSNNNISFNRRRENERRDRESGL-SKNDRCDRSIRC 240
Query: 241 RECEVFGHYQTE----CPSFLKRKRKSLAVTFYDDELIASSDSKEDGRALL 275
EC+ F HYQ E +FLK+KRKS VT Y DE ++S+ +E GRAL+
Sbjct: 241 YECDGFRHYQVEYVKVSKTFLKQKRKSSIVTLY-DEATSNSEFEEFGRALI 289
BLAST of PI0026563 vs. ExPASy TrEMBL
Match:
A0A1S4E5V5 (uncharacterized protein LOC107992254 OS=Cucumis melo OX=3656 GN=LOC107992254 PE=4 SV=1)
HSP 1 Score: 245.0 bits (624), Expect = 3.9e-61
Identity = 142/307 (46.25%), Postives = 191/307 (62.21%), Query Frame = 0
Query: 1 MIVFLKSIDSRTWKAVVTCWAHPTVT----DAEGKSCYGINAEDEAFFGNSCALNATFNG 60
MI F+K +D + W+ VV + P +T +AE++A GN+ A+NA FNG
Sbjct: 1 MIFFIKILDGKAWRVVVGGYEPPMITVNGVSVPKPEIDWTDAEEKASVGNARAINAMFNG 60
Query: 61 VDQNVFKLINSSTSAKEAYRILDVAYEGTSKVNMPRLQILTSKFKSLKMNDEDTIAKYNV 120
VD N+FKLINS T+AKEA++IL+VAYEGTSKV + RLQ++TSKF++LKM +++T+++YN
Sbjct: 61 VDLNIFKLINSYTTAKEAWKILEVAYEGTSKVKISRLQLITSKFEALKMTEDETVSEYNE 120
Query: 121 HVLDVDNESFALREKIVEPKLVRKVFRSLPRCFDLKVIVIEETNDITTLKLDELFGFLRM 180
VL++ N+S L EKI E K+V KV RSLPR FD+KV IEE DITTLKLDELFG L
Sbjct: 121 RVLEIANDSLLLAEKIPESKIVCKVLRSLPRKFDMKVTAIEEAQDITTLKLDELFGSLLT 180
Query: 181 FKLTFDDKGDKKGKGLALHSVDDNEH--YQGGCRENE---------------KSLNNSNP 240
F++ D+ KKGK +A SV D E+ Q G N+ + N+ +
Sbjct: 181 FEMAISDRESKKGKRIAFKSVYDQENTVNQSGNEANQDESLALLTKQFSKMARKRNSDHE 240
Query: 241 K----VDRSFKCRECEVFGHYQTECPSFLKRKRKSLAVTFYDDELIASSDSKEDG---RA 280
K V SF+CRECE GHYQ ECP++L R++K+ T D+E SD+ ED A
Sbjct: 241 KKKEDVGGSFRCRECEGLGHYQAECPAYLIRQKKNYCATLSDEE----SDNDEDDHGINA 300
BLAST of PI0026563 vs. ExPASy TrEMBL
Match:
V9H042 (Gag-protease polyprotein OS=Glycine max OX=3847 PE=2 SV=1)
HSP 1 Score: 231.9 bits (590), Expect = 3.4e-57
Identity = 135/324 (41.67%), Postives = 184/324 (56.79%), Query Frame = 0
Query: 1 MIVFLKSIDSRTWKAVVTCWAHPTVTDAEGKSCYGI-------NAEDEAFFGNSCALNAT 60
M+ FLKS+DSRTWKAV+ W HP + D EGK G+ EDE GNS ALNA
Sbjct: 28 MVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDELALGNSKALNAL 87
Query: 61 FNGVDQNVFKLINSSTSAKEAYRILDVAYEGTSKVNMPRLQILTSKFKSLKMNDEDTIAK 120
FNGVD+N+F+LIN+ T AK+A+ IL +EGTSKV M RLQ+L +KF++LKM +E+ I
Sbjct: 88 FNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHD 147
Query: 121 YNVHVLDVDNESFALREKIVEPKLVRKVFRSLPRCFDLKVIVIEETNDITTLKLDELFGF 180
+++++L++ N AL E++ + KLVRK+ RSLP+ FD+KV IEE DI L++DEL G
Sbjct: 148 FHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNLRVDELIGS 207
Query: 181 LRMFKLTFDDKGDKKGKGLALHSVDDNEHYQGGCRENE--------------KSLN---- 240
L+ F+L D+ +KK K LA S D+ E + +E K LN
Sbjct: 208 LQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDR 267
Query: 241 -----------------------NSNPKVDRSFKCRECEVFGHYQTECPSFLKRKRKSLA 276
+ P + F+C CE +GH + ECP+ LK++RK L+
Sbjct: 268 RQKPHVRNIPFDIRKGSEYQKRSDEKPSHSKGFQCHGCEGYGHIKAECPTHLKKQRKGLS 327
BLAST of PI0026563 vs. ExPASy TrEMBL
Match:
A0A5D3DTY9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00430 PE=4 SV=1)
HSP 1 Score: 231.5 bits (589), Expect = 4.5e-57
Identity = 146/345 (42.32%), Postives = 193/345 (55.94%), Query Frame = 0
Query: 1 MIVFLKSIDSRTWKAVVTCWAHPTVT----DAEGKSCYGINAEDEAFFGNSCALNATFNG 60
MI F+K++D + W+A+V + P VT +AE++A N+ A+NA FNG
Sbjct: 1 MIFFIKTLDGKAWRALVAGYEPPMVTVDGVSVPKSEVDWTDAEEQASVVNARAINAIFNG 60
Query: 61 VDQNVFKLINSSTSAKEAYRILDVAYEGTSKVNMPRLQILTSKFKSLKMNDEDTIAKYNV 120
VD NVFKLINS T+AKEA++IL+VAYEGTSKV + RL ++TSKF++LKM ++++++KYN
Sbjct: 61 VDLNVFKLINSCTTAKEAWKILEVAYEGTSKVKISRLHLITSKFETLKMTEDESVSKYNE 120
Query: 121 HVLDVDNESFALREKIVEPKLVRKVFRSLPRCFDLKVIVIEETNDITTLKLDELFGFLRM 180
VL + N+S L EKI E K+VRKV RSLPR FD+KV IEE DITTLKLDELFG L
Sbjct: 121 RVLKITNDSLLLGEKIPESKIVRKVLRSLPRKFDMKVTTIEEAQDITTLKLDELFGSLVT 180
Query: 181 FKLTFDDKGDKKGKGLALHS---------VDDNEHYQG---------------------- 240
F++ ++ KKGKG+A S DNE Q
Sbjct: 181 FEMAITNRESKKGKGIAFKSPYEQETTVNQSDNEVNQDESIALLTKQFFKMARKLKSMNT 240
Query: 241 -------GCRENEKSLNNSN--------------PKVDRSFKCRECEVFGHYQTECPSFL 288
G + E S+ N V RSF+CRECE FGHYQ E P+FL
Sbjct: 241 AEITVKTGRHDGENSIRKVNDFSYRRNSDYGKKKEDVGRSFRCRECEGFGHYQAERPTFL 300
BLAST of PI0026563 vs. ExPASy TrEMBL
Match:
Q84VH8 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)
HSP 1 Score: 228.4 bits (581), Expect = 3.8e-56
Identity = 133/323 (41.18%), Postives = 180/323 (55.73%), Query Frame = 0
Query: 1 MIVFLKSIDSRTWKAVVTCWAHPTVTDAEGKSCYGI-------NAEDEAFFGNSCALNAT 60
M+ FLKS+DSRTWKAV+ W HP + D EGK + EDE GNS ALNA
Sbjct: 28 MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNAL 87
Query: 61 FNGVDQNVFKLINSSTSAKEAYRILDVAYEGTSKVNMPRLQILTSKFKSLKMNDEDTIAK 120
FNGVD+N+F+LIN+ T AK+A+ IL + +EGTSKV M RLQ+L +KF++LKM +E+ I
Sbjct: 88 FNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHD 147
Query: 121 YNVHVLDVDNESFALREKIVEPKLVRKVFRSLPRCFDLKVIVIEETNDITTLKLDELFGF 180
+++++L++ N AL E+I + KLVRK+ RSLP+ FD+KV IEE DI +++DEL G
Sbjct: 148 FHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGS 207
Query: 181 LRMFKLTFDDKGDKKGKGLALHSVDDNE-------------------------------- 240
L+ F+L D+ +KK K LA S D+ E
Sbjct: 208 LQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDK 267
Query: 241 ----HYQG---GCRENEKSLNNSN--PKVDRSFKCRECEVFGHYQTECPSFLKRKRKSLA 276
H Q R+ K S+ P + +C CE +GH ECP+ LK+ RK L+
Sbjct: 268 RQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECPTHLKKHRKGLS 327
BLAST of PI0026563 vs. NCBI nr
Match:
KAA0058905.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK23719.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 252.7 bits (644), Expect = 3.9e-63
Identity = 148/291 (50.86%), Postives = 188/291 (64.60%), Query Frame = 0
Query: 1 MIVFLKSIDSRTWKAVVTCWAHPTVTDAEGK-----SCYGINAEDEAFFGNSCALNATFN 60
MI FLKSID+++WKAVV HP D GK +AEDEA GNS LNA FN
Sbjct: 1 MIAFLKSIDNKSWKAVVFGLEHPIGIDVAGKVSLKPELTWSSAEDEAALGNSRVLNARFN 60
Query: 61 GVDQNVFKLINSSTSAKEAYRILDVAYEGTSKVNMPRLQILTSKFKSLKMNDEDTIAKYN 120
GVDQNVF+LIN+ T KEA+ IL VAYEGTSK M RLQILTS F++LKM+D++TI +N
Sbjct: 61 GVDQNVFRLINTCTFTKEAWNILQVAYEGTSKEKMLRLQILTSHFEALKMSDDETIVDFN 120
Query: 121 VHVLDVDNESFALREKIVEPKLVRKVFRSLPRCFDLKVIVIEETNDITTLKLDELFGFLR 180
V VLD+ NESFAL EK+ + KLVRKV RSLP+ F++KV I+E ND+TT KLD LFG LR
Sbjct: 121 VRVLDIANESFALGEKMSKTKLVRKVLRSLPQRFNMKVTAIKEANDVTTKKLDVLFGSLR 180
Query: 181 MFKLTFDDKGDKKGKGLAL--------HSVDDNEHYQGGCRENEKSLNNSNPKVDRSFKC 240
F+L + K G+ +++ N + R+ E L + N + DRS +C
Sbjct: 181 TFELNMGEGNSKNKSGITFLSNSSSSNNNISFNRRRENERRDRESGL-SKNDRCDRSIRC 240
Query: 241 RECEVFGHYQTE----CPSFLKRKRKSLAVTFYDDELIASSDSKEDGRALL 275
EC+ F HYQ E +FLK+KRKS VT Y DE ++S+ +E GRAL+
Sbjct: 241 YECDGFRHYQVEYVKVSKTFLKQKRKSSIVTLY-DEATSNSEFEEFGRALI 289
BLAST of PI0026563 vs. NCBI nr
Match:
XP_016903608.1 (PREDICTED: uncharacterized protein LOC107992254 [Cucumis melo])
HSP 1 Score: 245.0 bits (624), Expect = 8.1e-61
Identity = 142/307 (46.25%), Postives = 191/307 (62.21%), Query Frame = 0
Query: 1 MIVFLKSIDSRTWKAVVTCWAHPTVT----DAEGKSCYGINAEDEAFFGNSCALNATFNG 60
MI F+K +D + W+ VV + P +T +AE++A GN+ A+NA FNG
Sbjct: 1 MIFFIKILDGKAWRVVVGGYEPPMITVNGVSVPKPEIDWTDAEEKASVGNARAINAMFNG 60
Query: 61 VDQNVFKLINSSTSAKEAYRILDVAYEGTSKVNMPRLQILTSKFKSLKMNDEDTIAKYNV 120
VD N+FKLINS T+AKEA++IL+VAYEGTSKV + RLQ++TSKF++LKM +++T+++YN
Sbjct: 61 VDLNIFKLINSYTTAKEAWKILEVAYEGTSKVKISRLQLITSKFEALKMTEDETVSEYNE 120
Query: 121 HVLDVDNESFALREKIVEPKLVRKVFRSLPRCFDLKVIVIEETNDITTLKLDELFGFLRM 180
VL++ N+S L EKI E K+V KV RSLPR FD+KV IEE DITTLKLDELFG L
Sbjct: 121 RVLEIANDSLLLAEKIPESKIVCKVLRSLPRKFDMKVTAIEEAQDITTLKLDELFGSLLT 180
Query: 181 FKLTFDDKGDKKGKGLALHSVDDNEH--YQGGCRENE---------------KSLNNSNP 240
F++ D+ KKGK +A SV D E+ Q G N+ + N+ +
Sbjct: 181 FEMAISDRESKKGKRIAFKSVYDQENTVNQSGNEANQDESLALLTKQFSKMARKRNSDHE 240
Query: 241 K----VDRSFKCRECEVFGHYQTECPSFLKRKRKSLAVTFYDDELIASSDSKEDG---RA 280
K V SF+CRECE GHYQ ECP++L R++K+ T D+E SD+ ED A
Sbjct: 241 KKKEDVGGSFRCRECEGLGHYQAECPAYLIRQKKNYCATLSDEE----SDNDEDDHGINA 300
BLAST of PI0026563 vs. NCBI nr
Match:
NP_001235160.1 (gag-protease polyprotein [Glycine max] >pir|T06419| gag-proteinase polyprotein - soybean retrovirus-like element [Glycine max] >AAC18777.1 gag-protease polyprotein [Glycine max])
HSP 1 Score: 231.9 bits (590), Expect = 7.1e-57
Identity = 135/324 (41.67%), Postives = 184/324 (56.79%), Query Frame = 0
Query: 1 MIVFLKSIDSRTWKAVVTCWAHPTVTDAEGKSCYGI-------NAEDEAFFGNSCALNAT 60
M+ FLKS+DSRTWKAV+ W HP + D EGK G+ EDE GNS ALNA
Sbjct: 28 MVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDELALGNSKALNAL 87
Query: 61 FNGVDQNVFKLINSSTSAKEAYRILDVAYEGTSKVNMPRLQILTSKFKSLKMNDEDTIAK 120
FNGVD+N+F+LIN+ T AK+A+ IL +EGTSKV M RLQ+L +KF++LKM +E+ I
Sbjct: 88 FNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHD 147
Query: 121 YNVHVLDVDNESFALREKIVEPKLVRKVFRSLPRCFDLKVIVIEETNDITTLKLDELFGF 180
+++++L++ N AL E++ + KLVRK+ RSLP+ FD+KV IEE DI L++DEL G
Sbjct: 148 FHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNLRVDELIGS 207
Query: 181 LRMFKLTFDDKGDKKGKGLALHSVDDNEHYQGGCRENE--------------KSLN---- 240
L+ F+L D+ +KK K LA S D+ E + +E K LN
Sbjct: 208 LQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDR 267
Query: 241 -----------------------NSNPKVDRSFKCRECEVFGHYQTECPSFLKRKRKSLA 276
+ P + F+C CE +GH + ECP+ LK++RK L+
Sbjct: 268 RQKPHVRNIPFDIRKGSEYQKRSDEKPSHSKGFQCHGCEGYGHIKAECPTHLKKQRKGLS 327
BLAST of PI0026563 vs. NCBI nr
Match:
KAA0039138.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26974.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 231.5 bits (589), Expect = 9.3e-57
Identity = 146/345 (42.32%), Postives = 193/345 (55.94%), Query Frame = 0
Query: 1 MIVFLKSIDSRTWKAVVTCWAHPTVT----DAEGKSCYGINAEDEAFFGNSCALNATFNG 60
MI F+K++D + W+A+V + P VT +AE++A N+ A+NA FNG
Sbjct: 1 MIFFIKTLDGKAWRALVAGYEPPMVTVDGVSVPKSEVDWTDAEEQASVVNARAINAIFNG 60
Query: 61 VDQNVFKLINSSTSAKEAYRILDVAYEGTSKVNMPRLQILTSKFKSLKMNDEDTIAKYNV 120
VD NVFKLINS T+AKEA++IL+VAYEGTSKV + RL ++TSKF++LKM ++++++KYN
Sbjct: 61 VDLNVFKLINSCTTAKEAWKILEVAYEGTSKVKISRLHLITSKFETLKMTEDESVSKYNE 120
Query: 121 HVLDVDNESFALREKIVEPKLVRKVFRSLPRCFDLKVIVIEETNDITTLKLDELFGFLRM 180
VL + N+S L EKI E K+VRKV RSLPR FD+KV IEE DITTLKLDELFG L
Sbjct: 121 RVLKITNDSLLLGEKIPESKIVRKVLRSLPRKFDMKVTTIEEAQDITTLKLDELFGSLVT 180
Query: 181 FKLTFDDKGDKKGKGLALHS---------VDDNEHYQG---------------------- 240
F++ ++ KKGKG+A S DNE Q
Sbjct: 181 FEMAITNRESKKGKGIAFKSPYEQETTVNQSDNEVNQDESIALLTKQFFKMARKLKSMNT 240
Query: 241 -------GCRENEKSLNNSN--------------PKVDRSFKCRECEVFGHYQTECPSFL 288
G + E S+ N V RSF+CRECE FGHYQ E P+FL
Sbjct: 241 AEITVKTGRHDGENSIRKVNDFSYRRNSDYGKKKEDVGRSFRCRECEGFGHYQAERPTFL 300
BLAST of PI0026563 vs. NCBI nr
Match:
AAO73527.1 (gag-pol polyprotein [Glycine max])
HSP 1 Score: 228.4 bits (581), Expect = 7.9e-56
Identity = 133/323 (41.18%), Postives = 180/323 (55.73%), Query Frame = 0
Query: 1 MIVFLKSIDSRTWKAVVTCWAHPTVTDAEGKSCYGI-------NAEDEAFFGNSCALNAT 60
M+ FLKS+DSRTWKAV+ W HP + D EGK + EDE GNS ALNA
Sbjct: 28 MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDELALGNSKALNAL 87
Query: 61 FNGVDQNVFKLINSSTSAKEAYRILDVAYEGTSKVNMPRLQILTSKFKSLKMNDEDTIAK 120
FNGVD+N+F+LIN+ T AK+A+ IL + +EGTSKV M RLQ+L +KF++LKM +E+ I
Sbjct: 88 FNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFENLKMKEEECIHD 147
Query: 121 YNVHVLDVDNESFALREKIVEPKLVRKVFRSLPRCFDLKVIVIEETNDITTLKLDELFGF 180
+++++L++ N AL E+I + KLVRK+ RSLP+ FD+KV IEE DI +++DEL G
Sbjct: 148 FHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGS 207
Query: 181 LRMFKLTFDDKGDKKGKGLALHSVDDNE-------------------------------- 240
L+ F+L D+ +KK K LA S D+ E
Sbjct: 208 LQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDK 267
Query: 241 ----HYQG---GCRENEKSLNNSN--PKVDRSFKCRECEVFGHYQTECPSFLKRKRKSLA 276
H Q R+ K S+ P + +C CE +GH ECP+ LK+ RK L+
Sbjct: 268 RQKPHVQNIPFDIRKGSKYQKRSDVKPSHSKGIQCHGCEGYGHIIAECPTHLKKHRKGLS 327
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UZ92 | 1.9e-63 | 50.86 | Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
| A0A1S4E5V5 | 3.9e-61 | 46.25 | uncharacterized protein LOC107992254 OS=Cucumis melo OX=3656 GN=LOC107992254 PE=... | [more] |
| V9H042 | 3.4e-57 | 41.67 | Gag-protease polyprotein OS=Glycine max OX=3847 PE=2 SV=1 | [more] |
| A0A5D3DTY9 | 4.5e-57 | 42.32 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G... | [more] |
| Q84VH8 | 3.8e-56 | 41.18 | Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0058905.1 | 3.9e-63 | 50.86 | gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK23719.1 gag-proteinase... | [more] |
| XP_016903608.1 | 8.1e-61 | 46.25 | PREDICTED: uncharacterized protein LOC107992254 [Cucumis melo] | [more] |
| NP_001235160.1 | 7.1e-57 | 41.67 | gag-protease polyprotein [Glycine max] >pir|T06419| gag-proteinase polyprotein -... | [more] |
| KAA0039138.1 | 9.3e-57 | 42.32 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26974.1 gag-pol polyprotein [... | [more] |
| AAO73527.1 | 7.9e-56 | 41.18 | gag-pol polyprotein [Glycine max] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
