PI0026440 (gene) Melon (PI 482460) v1

Overview


Name	PI0026440
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr01: 17112561 .. 17114656 (-)
RNA-Seq Expression	PI0026440
Synteny	PI0026440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGAAGATGTTTTGCCATTCTATACCACCTACTTAAGATGACTTCTGGATTAGGGTCAACAGAAGTCGTCGACATCAAGGAGATAGTCGCCATGTTCCTACATGTACTCATGCACAACATGAAGAACCGAGTGATCCAAAGGAAGTTCGTGCGGTCGGGTGAGACAATTTTGTGATATTTCAACATAGTCTTGTTGGCAGTGCTATGCTTGCATGACGAGTTGTTGAAGAAACCTCAACTAGTGACAAACGCATGCATAAATCCGAGATGGAAGTGATTTCAGGTAGGATACTTTATGAACGGTCGTTACTTGGACACGTTTACCTCTACGGTTTGCATATTTACGATCTTCCTACAATGTAGAATTGCCTAGGTGTGTTAAATGACACATACATAAAGGTAAACGTGAGTGCAGCTGATCGTTCGAGATATGGGACACAGAAGGATGAAGTTGCCACAAACGTCCTAGGTGTATGTGATACGAAAGGTGATTTTGTGTTTGTCTTAGCTGGTTGGGAAAGGTCCAAAGTGGATTCTCGCATCCTTAGAGATGTTATTTCAAGACCTAACGGACTAAGGGTTTCGAAGGGTGAGTACATACCCATCATTCTTCTCAACCATATTGTAAATTTTCGACAATAGTCATTTGAAAGATTCGATATCCCAACAGGGTACTATTACCTATGCGATGTCAGATATCCCAACAGGGTACTACTACCTATGCGATGTCAGGTATCCCAATGCTGAGGGTTTCCTGACTCCATACAAAGGGCAACGATACCACCTACAAAAGTGGCGTGGAGCGGAAAATGTACCAACAACAAAACGAGTGTTCTTTAACATGAAATATTCTTCTGCACGGAATGTCATTGAAAGAGCATTCGATCTGTTGAAGGGTCGCTGGACAATCATTCGCGGAAAGTCATACTACCCGATTGAAGTCCAATGTCGTACGATACTGACATGTTGTCTACTACACAATCTAATCAATAAAGAGATGACAAATGCTGATGTCACGGAGAATTACGACGAAGTTGATTCGACACATGCAACAACTACAGGTGACGACATTCACTACATCGAAACCTCCAATGAATGGAGTCATTGGAGGGATGATCTTGCCGAAGAGATGTTCAGTGAATGGGAGTTACGTGATTAGTAGTACCCTTACGATCCTTGTTAATTTTGGACACGTTAATGGTGTTTTGAAACGTCTTAATTTTTTTTTGTGAATGCATGTGTACATTTACAACATCAATGCATAATTGACAAATCAATTTGGAGGACACTTTACTATGTTGCATACTTTTTGGTTTATGTTACTGACTACAATATTTAATTTTCGTATCTTCACTAGTATGACAAGTTCCTCCCAGGCCCCCAAATACATCTAGACGAAGGAGGAAGAGTTGCATAAAAAATACTGGAAGTTGGTATCCGCCGGCGCCTGGAAGTCAGACAACAGTACCTTCCGTCCTGGGTACCTGGCTCAGCTACAAAAAGTGCTGGCGGAGAAGATGCCAGGATTAATATCCAGGATTTGCCGACAATAGACTGTCGAATAAAAAACATGAAGAAAATATTCTAGGCAATCATAGAAATGAGCGGGCCGTCATGTAGTGGGTTTGATTGGAACGATGAAGTGAAGTGCATCATCGCTGAGAGAGAGTTATTCAATATTGGGTGAAGGTAAGTTATTCATTATGAAAATAGGTTGTTCGTTTATAATAGAAAAACTGACAGTTTATTTAAAAACTTGAACAAAGTCATCCTGCTGCGAAGGGCGTCCTAAACAAGCCATTTTCCCATTACGACGACCTATGCTATGCATTTCGAAAGGATCGTGCGACCGGAGCTCATGTAGAGACATTCACCGATTTCAGGTCGAATGTGCCTGGAGGGTTCGAGGGATTTCCCGCTGATTATGGAAACGATACGGAGATCCCTATGATGTACAGTCAGGGACTAGACATGTCACCTACTGACATTGCAGGCTCACGACCCGGTCGCTTGATGGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGGAAGCGGGGAGGCCAGGTAGTACAGACTGTGGAAATCATTTAG

mRNA sequence

ATGGACAGAAGATGTTTTGCCATTCTATACCACCTACTTAAGATGACTTCTGGATTAGGGTCAACAGAAGTCGTCGACATCAAGGAGATAGTCGCCATGTTCCTACATGTACTCATGCACAACATGAAGAACCGAGTGATCCAAAGGAAGTTCGTGCGGTCGGGTGTGTTAAATGACACATACATAAAGGTAAACGTGAGTGCAGCTGATCGTTCGAGATATGGGACACAGAAGGATGAAGTTGCCACAAACGTCCTAGGTGTATGTGATACGAAAGGTGATTTTGTGTTTGTCTTAGCTGGTTGGGAAAGGTCCAAAGTGGATTCTCGCATCCTTAGAGATGTTATTTCAAGACCTAACGGACTAAGGGTTTCGAAGGGTGAGTACATACCCATCATTCTTCTCAACCATATTGGCGTCCTAAACAAGCCATTTTCCCATTACGACGACCTATGCTATGCATTTCGAAAGGATCGTGCGACCGGAGCTCATGTAGAGACATTCACCGATTTCAGGTCGAATGTGCCTGGAGGGTTCGAGGGATTTCCCGCTGATTATGGAAACGATACGGAGATCCCTATGATGTACAGTCAGGGACTAGACATGTCACCTACTGACATTGCAGGCTCACGACCCGGTCGCTTGATGGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGGAAGCGGGGAGGCCAGGTAGTACAGACTGTGGAAATCATTTAG

Coding sequence (CDS)

ATGGACAGAAGATGTTTTGCCATTCTATACCACCTACTTAAGATGACTTCTGGATTAGGGTCAACAGAAGTCGTCGACATCAAGGAGATAGTCGCCATGTTCCTACATGTACTCATGCACAACATGAAGAACCGAGTGATCCAAAGGAAGTTCGTGCGGTCGGGTGTGTTAAATGACACATACATAAAGGTAAACGTGAGTGCAGCTGATCGTTCGAGATATGGGACACAGAAGGATGAAGTTGCCACAAACGTCCTAGGTGTATGTGATACGAAAGGTGATTTTGTGTTTGTCTTAGCTGGTTGGGAAAGGTCCAAAGTGGATTCTCGCATCCTTAGAGATGTTATTTCAAGACCTAACGGACTAAGGGTTTCGAAGGGTGAGTACATACCCATCATTCTTCTCAACCATATTGGCGTCCTAAACAAGCCATTTTCCCATTACGACGACCTATGCTATGCATTTCGAAAGGATCGTGCGACCGGAGCTCATGTAGAGACATTCACCGATTTCAGGTCGAATGTGCCTGGAGGGTTCGAGGGATTTCCCGCTGATTATGGAAACGATACGGAGATCCCTATGATGTACAGTCAGGGACTAGACATGTCACCTACTGACATTGCAGGCTCACGACCCGGTCGCTTGATGGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGGAAGCGGGGAGGCCAGGTAGTACAGACTGTGGAAATCATTTAG

Protein sequence

MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRSGVLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYIPIILLNHIGVLNKPFSHYDDLCYAFRKDRATGAHVETFTDFRSNVPGGFEGFPADYGNDTEIPMMYSQGLDMSPTDIAGSRPGRLMEGRTGSSGSKRKRGGQVVQTVEII

Homology

[Close]

BLAST of PI0026440 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-54
Identity = 154/415 (37.11%), Postives = 186/415 (44.82%), Query Frame = 0


Query: 1   MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS------ 60
           MDRRCFAIL HLL+ T+ L  TEV+D++E+VAMFLH+L H+MKNR+IQR+FVRS      
Sbjct: 1   MDRRCFAILCHLLRTTARLVGTEVIDVEEMVAMFLHILAHDMKNRIIQREFVRSGETVSR 60

Query: 61  ---------------------------------------GVLNDTYIKVNVSAADRSRYG 120
                                                  G L+DTYIKVNVSA DR RY 
Sbjct: 61  HFNLVLLSVLRLHNELLKKPQLVTNSCMDPRWKWFENCLGALDDTYIKVNVSATDRPRYS 120

Query: 121 TQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKG-------- 180
           T+K EVA NVLGVCDTKGDFVFVL+GWE S  DSRILRD ISR NGL+V KG        
Sbjct: 121 TRKGEVAINVLGVCDTKGDFVFVLSGWEGSAADSRILRDAISRHNGLKVPKGYYYLCDAG 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 YSNVEGFLAPYRGERYHLSEWHGGSNAPTTAREFFNMKHSSARNVIKRAFWLLKGCWAIL 240

[Close]

BLAST of PI0026440 vs. ExPASy TrEMBL
Match: A0A5A7SML2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002680 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 8.6e-54
Identity = 139/361 (38.50%), Postives = 177/361 (49.03%), Query Frame = 0


Query: 1   MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS------ 60
           MDRR FAIL HLL+  SGL S ++VD +E+VAMFLH+L H++KNRVIQR+FVRS      
Sbjct: 1   MDRRTFAILCHLLRTVSGLSSIQIVDAEEMVAMFLHILAHDVKNRVIQREFVRSSETVSR 60

Query: 61  -------------------------GVLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVC 120
                                    G L+ TYIKVNV AADR  + T+K ++ATNVLGVC
Sbjct: 61  HFNLVLLAVVQLYEELIKRLVLNCLGALDGTYIKVNVPAADRPTFKTRKGDIATNVLGVC 120

Query: 121 DTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKG---------------------- 180
           DTKGDFV+VL GWE S  +S+ILRD +++ NGL+V KG                      
Sbjct: 121 DTKGDFVYVLVGWEGSAANSQILRDALAQENGLQVPKGYPNAKGFLGLYRGQRCHLQEWR 180

Query: 181 ---------------EYIPIILLNHI---------------------------------- 239
                          ++  +  + H+                                  
Sbjct: 181 GAGNAPTNAKEYFNMKHSSVRNVRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYL 240

[Close]

BLAST of PI0026440 vs. ExPASy TrEMBL
Match: A0A5D3BSN2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00050 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52
Identity = 143/387 (36.95%), Postives = 177/387 (45.74%), Query Frame = 0


Query: 1   MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS------ 60
           MDRRCF IL HLL+  +GL S EVVD++E+VAMFLH++ H++KNRVIQR+F+RS      
Sbjct: 1   MDRRCFTILCHLLRTVAGLTSIEVVDVEEMVAMFLHIVAHDVKNRVIQREFMRSGETISR 60

Query: 61  ---------------------------------------GVLNDTYIKVNVSAADRSRYG 120
                                                  G L+ TYIKVNV A+DR+RY 
Sbjct: 61  HFNMVLLVVIRLHDKLLKKPQPVNNDCTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 120

Query: 121 TQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYIPI--- 180
           T K EVATNVLG+CDTKGDFV+VLAGWE S  DSRIL D ISRPNGL+V KG Y  +   
Sbjct: 121 THKGEVATNVLGLCDTKGDFVYVLAGWEGSAADSRILHDAISRPNGLKVPKGYYYLVDAG 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 YPNVDGFLAAYRGQRYHLQEWRGVENAPSTSKEFFNMKHSSARNTKEEEAGLVECLVELV 240

[Close]

BLAST of PI0026440 vs. ExPASy TrEMBL
Match: A0A5A7SQE9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00110 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 9.8e-50
Identity = 129/286 (45.10%), Postives = 164/286 (57.34%), Query Frame = 0


Query: 1   MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRSG----- 60
           MDRR F I+ HLL+  +GL STE+VD++E+VAMFLHVL H++KNRVIQR+FVR G     
Sbjct: 40  MDRRTFTIICHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRFGETVSR 99

Query: 61  ----------------------VLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKG 120
                                 V N TYIKVNV A D+  + T+K E+ATNVLGVCDTKG
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTNGTYIKVNVPAEDQPTFRTRKGEIATNVLGVCDTKG 159

Query: 121 DFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYI--------------PIILLNHIG 180
           DFV+VLAGWE S  DSRIL D +SR NGL+V KG Y                  L    G
Sbjct: 160 DFVYVLAGWEGSAADSRILCDALSRENGLQVPKGYYYLCDAEGFLAPYRGQRYHLQESRG 219

Query: 181 VLNKPFS--HYDDLCYAFRK---DRATGAHVETFTDFRSNVPGGFEGFPADYGNDTEIPM 240
             N+P +   Y ++ ++  +   +RA G   + +   R      +  F    GN+ + P 
Sbjct: 220 AANEPTNAKEYFNMKHSSARNVIERAFGVLKDRWAILRGK--SYYPLFDIGDGNE-DFPP 279

[Close]

BLAST of PI0026440 vs. ExPASy TrEMBL
Match: A0A5A7VGH2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002660 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.2e-49
Identity = 118/257 (45.91%), Postives = 144/257 (56.03%), Query Frame = 0


Query: 1   MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS------ 60
           MDRRC     HLL+ T+GL  T+V+D++E+VAMF+H+L H+MKNR+IQRKFVR       
Sbjct: 1   MDRRCIPSSCHLLRTTAGLVGTKVIDVEEMVAMFMHILAHDMKNRMIQRKFVRCGETVSR 60

Query: 61  ---------------------------------------GVLNDTYIKVNVSAADRSRYG 120
                                                  G L+ TYIKVNVSA DR RY 
Sbjct: 61  HFNFVLLAVLRLHDELLKKSQPVRNSCTDPRWKWFENCLGALDGTYIKVNVSATDRPRYR 120

Query: 121 TQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYIPIILL 180
           T+K +V TNVLGVCD KGDFVFVL+ WE S  DSRIL+D ISR NGL+            
Sbjct: 121 TRKGDVVTNVLGVCDKKGDFVFVLSRWEGSATDSRILKDAISRHNGLKSHPAAK------ 180

Query: 181 NHIGVLNKPFSHYDDLCYAFRKDRATGAHVETFTDFRSNVPGGF-EGFPADYGNDTEIPM 212
              G+LNK F +YDDL Y F KDR T    +TF +  SNVP  F +        D +IPM
Sbjct: 181 ---GLLNKSFPYYDDLSYVFGKDRVTRERSDTFVNVGSNVPNVFNDDVALGDSPDQDIPM 240

[Close]

BLAST of PI0026440 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-54
Identity = 154/415 (37.11%), Postives = 186/415 (44.82%), Query Frame = 0


Query: 1   MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS------ 60
           MDRRCFAIL HLL+ T+ L  TEV+D++E+VAMFLH+L H+MKNR+IQR+FVRS      
Sbjct: 1   MDRRCFAILCHLLRTTARLVGTEVIDVEEMVAMFLHILAHDMKNRIIQREFVRSGETVSR 60

Query: 61  ---------------------------------------GVLNDTYIKVNVSAADRSRYG 120
                                                  G L+DTYIKVNVSA DR RY 
Sbjct: 61  HFNLVLLSVLRLHNELLKKPQLVTNSCMDPRWKWFENCLGALDDTYIKVNVSATDRPRYS 120

Query: 121 TQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKG-------- 180
           T+K EVA NVLGVCDTKGDFVFVL+GWE S  DSRILRD ISR NGL+V KG        
Sbjct: 121 TRKGEVAINVLGVCDTKGDFVFVLSGWEGSAADSRILRDAISRHNGLKVPKGYYYLCDAG 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 YSNVEGFLAPYRGERYHLSEWHGGSNAPTTAREFFNMKHSSARNVIKRAFWLLKGCWAIL 240

[Close]

BLAST of PI0026440 vs. NCBI nr
Match: KAA0025957.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 1.8e-53
Identity = 139/361 (38.50%), Postives = 177/361 (49.03%), Query Frame = 0


Query: 1   MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS------ 60
           MDRR FAIL HLL+  SGL S ++VD +E+VAMFLH+L H++KNRVIQR+FVRS      
Sbjct: 1   MDRRTFAILCHLLRTVSGLSSIQIVDAEEMVAMFLHILAHDVKNRVIQREFVRSSETVSR 60

Query: 61  -------------------------GVLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVC 120
                                    G L+ TYIKVNV AADR  + T+K ++ATNVLGVC
Sbjct: 61  HFNLVLLAVVQLYEELIKRLVLNCLGALDGTYIKVNVPAADRPTFKTRKGDIATNVLGVC 120

Query: 121 DTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKG---------------------- 180
           DTKGDFV+VL GWE S  +S+ILRD +++ NGL+V KG                      
Sbjct: 121 DTKGDFVYVLVGWEGSAANSQILRDALAQENGLQVPKGYPNAKGFLGLYRGQRCHLQEWR 180

Query: 181 ---------------EYIPIILLNHI---------------------------------- 239
                          ++  +  + H+                                  
Sbjct: 181 GAGNAPTNAKEYFNMKHSSVRNVRHVWTKEEESTLMECSMELVSMGGWKSDNGTFQPGYL 240

[Close]

BLAST of PI0026440 vs. NCBI nr
Match: TYK02751.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 2.6e-52
Identity = 143/387 (36.95%), Postives = 177/387 (45.74%), Query Frame = 0


Query: 1   MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS------ 60
           MDRRCF IL HLL+  +GL S EVVD++E+VAMFLH++ H++KNRVIQR+F+RS      
Sbjct: 1   MDRRCFTILCHLLRTVAGLTSIEVVDVEEMVAMFLHIVAHDVKNRVIQREFMRSGETISR 60

Query: 61  ---------------------------------------GVLNDTYIKVNVSAADRSRYG 120
                                                  G L+ TYIKVNV A+DR+RY 
Sbjct: 61  HFNMVLLVVIRLHDKLLKKPQPVNNDCTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 120

Query: 121 TQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYIPI--- 180
           T K EVATNVLG+CDTKGDFV+VLAGWE S  DSRIL D ISRPNGL+V KG Y  +   
Sbjct: 121 THKGEVATNVLGLCDTKGDFVYVLAGWEGSAADSRILHDAISRPNGLKVPKGYYYLVDAG 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 YPNVDGFLAAYRGQRYHLQEWRGVENAPSTSKEFFNMKHSSARNTKEEEAGLVECLVELV 240

[Close]

BLAST of PI0026440 vs. NCBI nr
Match: KAA0031771.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-49
Identity = 129/286 (45.10%), Postives = 164/286 (57.34%), Query Frame = 0


Query: 1   MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRSG----- 60
           MDRR F I+ HLL+  +GL STE+VD++E+VAMFLHVL H++KNRVIQR+FVR G     
Sbjct: 40  MDRRTFTIICHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRFGETVSR 99

Query: 61  ----------------------VLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKG 120
                                 V N TYIKVNV A D+  + T+K E+ATNVLGVCDTKG
Sbjct: 100 HFNIVLLAVLRLYEELIKRPVPVTNGTYIKVNVPAEDQPTFRTRKGEIATNVLGVCDTKG 159

Query: 121 DFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYI--------------PIILLNHIG 180
           DFV+VLAGWE S  DSRIL D +SR NGL+V KG Y                  L    G
Sbjct: 160 DFVYVLAGWEGSAADSRILCDALSRENGLQVPKGYYYLCDAEGFLAPYRGQRYHLQESRG 219

Query: 181 VLNKPFS--HYDDLCYAFRK---DRATGAHVETFTDFRSNVPGGFEGFPADYGNDTEIPM 240
             N+P +   Y ++ ++  +   +RA G   + +   R      +  F    GN+ + P 
Sbjct: 220 AANEPTNAKEYFNMKHSSARNVIERAFGVLKDRWAILRGK--SYYPLFDIGDGNE-DFPP 279

[Close]

BLAST of PI0026440 vs. NCBI nr
Match: KAA0067183.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 205.7 bits (522), Expect = 4.5e-49
Identity = 118/257 (45.91%), Postives = 144/257 (56.03%), Query Frame = 0


Query: 1   MDRRCFAILYHLLKMTSGLGSTEVVDIKEIVAMFLHVLMHNMKNRVIQRKFVRS------ 60
           MDRRC     HLL+ T+GL  T+V+D++E+VAMF+H+L H+MKNR+IQRKFVR       
Sbjct: 1   MDRRCIPSSCHLLRTTAGLVGTKVIDVEEMVAMFMHILAHDMKNRMIQRKFVRCGETVSR 60

Query: 61  ---------------------------------------GVLNDTYIKVNVSAADRSRYG 120
                                                  G L+ TYIKVNVSA DR RY 
Sbjct: 61  HFNFVLLAVLRLHDELLKKSQPVRNSCTDPRWKWFENCLGALDGTYIKVNVSATDRPRYR 120

Query: 121 TQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRDVISRPNGLRVSKGEYIPIILL 180
           T+K +V TNVLGVCD KGDFVFVL+ WE S  DSRIL+D ISR NGL+            
Sbjct: 121 TRKGDVVTNVLGVCDKKGDFVFVLSRWEGSATDSRILKDAISRHNGLKSHPAAK------ 180

Query: 181 NHIGVLNKPFSHYDDLCYAFRKDRATGAHVETFTDFRSNVPGGF-EGFPADYGNDTEIPM 212
              G+LNK F +YDDL Y F KDR T    +TF +  SNVP  F +        D +IPM
Sbjct: 181 ---GLLNKSFPYYDDLSYVFGKDRVTRERSDTFVNVGSNVPNVFNDDVALGDSPDQDIPM 240

[Close]

BLAST of PI0026440 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-07
Identity = 22/64 (34.38%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 55  GVLNDTYIKVNVSAADRSRYGTQKDEVATNVLGVCDTKGDFVFVLAGWERSKVDSRILRD 114
           G ++DT+I   VS      +  +K +++ N+L  C+   +F++VL+GWE S  DS++L D
Sbjct: 27  GAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKVLND 86

Query: 115 VISR 119
            ++R
Sbjct: 87  ALTR 90

The following BLAST results are available for this feature:

BLAST of PI0026440 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQU2	1.0e-54	37.11	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SML2	8.6e-54	38.50	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BSN2	1.2e-52	36.95	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SQE9	9.8e-50	45.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VGH2	2.2e-49	45.91	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of PI0026440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033290.1	2.1e-54	37.11	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas...	[more]
KAA0025957.1	1.8e-53	38.50	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK02751.1	2.6e-52	36.95	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0031771.1	2.0e-49	45.10	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0067183.1	4.5e-49	45.91	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of PI0026440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28950.1	3.5e-07	34.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..233
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 1..55
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 57..129
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..55
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 57..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026440.1	PI0026440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding