PI0026381 (gene) Melon (PI 482460) v1

Overview
NamePI0026381
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Descriptionauxin-regulated gene involved in organ size
Locationchr08: 5625806 .. 5626611 (+)
RNA-Seq ExpressionPI0026381
SyntenyPI0026381
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATACAAAACCTGTCTCTTTAACCACCATCTCCACCTCTTTTTGCTACAAAAATTCCCCTCCTCCGCCCTCATCAGTCGCCGATGCCACCGCGACAACTCGTTTGCCTCCTTCCCCATCGTTACTCCTCTCACCGTGGTAGCACTTTTCATCAAAGACTTATAAGATACAACTTTAGAACTAAGATGGCGAAAGCAAGTACAAATTTGCACCAAACAAGCAGGAGCTAGAAGAAATAAGGATTGAGCTAGGGCTACTTTTCCTTTCTTGATGGTCCGCTACTCCAACATGTTTTTGTTGTTTCTTTGGACACTATCCCTTTTGGTTCTACCTCTACTTCTTCCGCCGCTCCCGCCGCCGCCCATGGTGCTTCTCTTTGTGCCTCTCGTTATCATGATGCTTCTTATCTTCTTTGCCTTGTCGACTTCTCAACTTCCAACCACTATAGTAGCGTCTGAAAGTTGTTGACGCATTTTTGTATAGTACAACACAGGTCCTCTTCTATACTCTTTACGATGATATGATATGGTTTGCTTTAGATCTGGTCTCTCATGATTTTGCGTCGTACAATGAAAATGTATCTAAGTGGATCTCTTTTCATTTATTCTTGCCGTCTTATGAAGACTATGACTATGTTCATATCTCGACCAATTCGGTAATATCGATTTAAATTTTGTGATCTTGGTTGAATAGATGTCCTTTTCTTGGATTTTCCAGGACTTGAAGAAGAAGAAAAGGAAATAATGAGGAAAAGAATAATGGGTGATTTTTGGAAGGAAAAGAGAATTGGGTTTTGTATTTTGT

mRNA sequence

ATGTATACAAAACCTGTCTCTTTAACCACCATCTCCACCTCTTTTTGCTACAAAAATTCCCCTCCTCCGCCCTCATCAGTCGCCGATGCCACCGCGACAACTCGTTTGCCTCCTTCCCCATCGTTACTCCTCTCACCGGCTACTTTTCCTTTCTTGATGGTCCGCTACTCCAACATGTTTTTGTTGTTTCTTTGGACACTATCCCTTTTGGTTCTACCTCTACTTCTTCCGCCGCTCCCGCCGCCGCCCATGGTGCTTCTCTTTGTGCCTCTCGTTATCATGATGCTTCTTATCTTCTTTGCCTTGTCGACTTCTCAACTTCCAACCACTATAGTAGCGTCTGAAAGTTGTTGACGCATTTTTGTATAGTACAACACAGGTCCTCTTCTATACTCTTTACGATGATATGATATGGTTTGCTTTAGATCTGGTCTCTCATGATTTTGCGTCGTACAATGAAAATGTATCTAAGTGGATCTCTTTTCATTTATTCTTGCCGTCTTATGAAGACTATGACTATGTTCATATCTCGACCAATTCGGTAATATCGATTTAAATTTTGTGATCTTGGTTGAATAGATGTCCTTTTCTTGGATTTTCCAGGACTTGAAGAAGAAGAAAAGGAAATAATGAGGAAAAGAATAATGGGTGATTTTTGGAAGGAAAAGAGAATTGGGTTTTGTATTTTGT

Coding sequence (CDS)

ATGTATACAAAACCTGTCTCTTTAACCACCATCTCCACCTCTTTTTGCTACAAAAATTCCCCTCCTCCGCCCTCATCAGTCGCCGATGCCACCGCGACAACTCGTTTGCCTCCTTCCCCATCGTTACTCCTCTCACCGGCTACTTTTCCTTTCTTGATGGTCCGCTACTCCAACATGTTTTTGTTGTTTCTTTGGACACTATCCCTTTTGGTTCTACCTCTACTTCTTCCGCCGCTCCCGCCGCCGCCCATGGTGCTTCTCTTTGTGCCTCTCGTTATCATGATGCTTCTTATCTTCTTTGCCTTGTCGACTTCTCAACTTCCAACCACTATAGTAGCGTCTGAAAGTTGTTGA

Protein sequence

MYTKPVSLTTISTSFCYKNSPPPPSSVADATATTRLPPSPSLLLSPATFPFLMVRYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVLLFVPLVIMMLLIFFALSTSQLPTTIVASESC
Homology
BLAST of PI0026381 vs. ExPASy TrEMBL
Match: A0A0A0KYG7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G433470 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.5e-38
Identity = 101/124 (81.45%), Postives = 103/124 (83.06%), Query Frame = 0

Query: 1   MYTKPVSLTTISTSFCYKNSPPPPSSVADATATTRLPPSPS----------LLLSPATFP 60
           MYTKPVS TTISTSFCYKNSPPPPSS  DAT  TRLPPS S          L L+ ATFP
Sbjct: 1   MYTKPVSSTTISTSFCYKNSPPPPSSAIDATTRTRLPPSASLDSSLREEIRLELARATFP 60

Query: 61  FLMVRYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVLLFVPLVIMMLLIFFALSTSQLPTT 115
           FLM RYSNMFLLFLWTLSLLVLPLLLPPLPPPPMV LFVPLVIMMLLIFFALSTSQ+PTT
Sbjct: 61  FLMARYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTT 120

BLAST of PI0026381 vs. ExPASy TrEMBL
Match: A0A2N9F7M5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10977 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-04
Identity = 34/55 (61.82%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 54  VRYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVLLFVPLVIMMLLIFFALSTSQLP 109
           VR+  + LL   T+SLLVLPL+LPPLPPPP++LLFVP+++M LL+F AL+ SQ+P
Sbjct: 7   VRFITVMLLL--TVSLLVLPLVLPPLPPPPLLLLFVPVLMMSLLVFLALTPSQVP 59

BLAST of PI0026381 vs. ExPASy TrEMBL
Match: A0A1J6HXM3 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_09277 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-04
Identity = 29/54 (53.70%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 59  MFLLFLWTLSLLVLPLLLPPLPPPPMVLLFVPLVIMMLLIFFALSTSQLPTTIV 113
           +F++   T+SLLVLPL+LPPLPPPP++ LF+P+++M+LL+F A + SQLP   +
Sbjct: 36  IFIMVFLTISLLVLPLVLPPLPPPPLMFLFIPVLLMVLLVFLAFTPSQLPNVAI 89

BLAST of PI0026381 vs. ExPASy TrEMBL
Match: A0A5D1ZT36 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D13G002400v1 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-04
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 54  VRYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVLLFVPLVIMMLLIFFALSTSQLPTTIVA 113
           +R+  + ++     SLLVLPLLLP LPPPP +LLFVP++IM+LL+F ALS SQ PT I  
Sbjct: 1   MRWIMVMIMMALAASLLVLPLLLPSLPPPPSMLLFVPVLIMILLLFLALSPSQAPTVITT 60

Query: 114 S 115
           +
Sbjct: 61  A 61

BLAST of PI0026381 vs. NCBI nr
Match: KGN54720.1 (hypothetical protein Csa_012521 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 5.1e-38
Identity = 101/124 (81.45%), Postives = 103/124 (83.06%), Query Frame = 0

Query: 1   MYTKPVSLTTISTSFCYKNSPPPPSSVADATATTRLPPSPS----------LLLSPATFP 60
           MYTKPVS TTISTSFCYKNSPPPPSS  DAT  TRLPPS S          L L+ ATFP
Sbjct: 1   MYTKPVSSTTISTSFCYKNSPPPPSSAIDATTRTRLPPSASLDSSLREEIRLELARATFP 60

Query: 61  FLMVRYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVLLFVPLVIMMLLIFFALSTSQLPTT 115
           FLM RYSNMFLLFLWTLSLLVLPLLLPPLPPPPMV LFVPLVIMMLLIFFALSTSQ+PTT
Sbjct: 61  FLMARYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVFLFVPLVIMMLLIFFALSTSQVPTT 120

BLAST of PI0026381 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 3.0e-04
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 52  LMVRYSNMFLLFLWTLSLLVLPLLLPPLPPPPMVLLFVPLVIMMLLIFFALSTSQLPTTI 111
           L+   S   LLFL +L LL+LP  LPPLPPPP  LL +PL++M+LLIF A S S  P+  
Sbjct: 24  LITARSVALLLFL-SLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPSLA 83

Query: 112 V 113
           V
Sbjct: 84  V 83

BLAST of PI0026381 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 42.4 bits (98), Expect = 3.0e-04
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 58  NMFLLFLWTLSLLVLPLLLPPLPPPPMVLLFVPLVIMMLLIFFALSTS 106
           ++FLL   T SLL+LPL+LPPLPPPP +LL VP+ IM+LL+  A   S
Sbjct: 69  SLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KYG72.5e-3881.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G433470 PE=4 SV=1[more]
A0A2N9F7M52.3e-0461.82Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10977 PE=4 SV=1[more]
A0A1J6HXM36.8e-0453.70Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_09277 PE=4 SV=1[more]
A0A5D1ZT366.8e-0455.74Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D13G002400v1 PE=... [more]
Match NameE-valueIdentityDescription
KGN54720.15.1e-3881.45hypothetical protein Csa_012521 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT2G41230.13.0e-0454.10unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact... [more]
AT3G59900.13.0e-0458.33auxin-regulated gene involved in organ size [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38928ARGOS7coord: 53..114
NoneNo IPR availablePANTHERPTHR38928:SF7SUBFAMILY NOT NAMEDcoord: 53..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0026381.1PI0026381.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane