PI0026293 (gene) Melon (PI 482460) v1

Overview


Name	PI0026293
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr03: 20314800 .. 20315843 (+)
RNA-Seq Expression	PI0026293
Synteny	PI0026293

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGGCTCCGAAAGGTTGCTTACCTTAAACTGAAGTTAATGAATGCTTTATAACGCCTTTTACATAATTATAATTACATCGTCTAATACAAAATTCCTTCTTTAAACATCGCCTAGAAATTGAGTTCGCATGCTCCATTCAATCCACCCTCCATATTCATACTCGCCATCTCGTTCGCATAGTAGTGTAAATAATTAAAAACCATAGAAACTACTTGTACATGATACTGTATACCGCTTTAAGATTAGAACGCCTAATGAACCATTTAGTAACCAAAATCCCTGCGTTCGACCCTGGCCTACCCAGAAAACCTCTTGCTCCGCTTCTACTTGGGCGAGCAAGAGGAAAACTTGTACTTTAACGAATTATCATTAGTAAACATGGAACGCATAGGTCTAGCTCTGCCCTTTTTAACGCATGATACTTGCCTGGTCGCCTCATTATTCCAGTCGCATACTTAGAGCCTTAATTTATATTTACGAAATAATTTTTAAGAATCAAGTTTTTGGTGTCGTTGCCTGGGATTTTGCGTTTATCTTTTTTAGTTTAATTTATGCGCTAATCTTGTGCAGAAGTTCAATTTCAGCTGAATCGTGCGTTCAAACCCGAAGAACCTGAGAACAAGTTTATGAGTGACGGTGAACAGCCGCAATTCGAACTTGACCCTAAAATTGAGCGAACCTTTCGGCGTAATCGGCGAAGAGCAAGGCAAAGACAAGCAAGAAGAATGGAAAACAATAATAGAAATGCCCCTCTACCGCAAGCTGCCCAAGAACCAAACACCGCCTACATGGCACATGACTTGGACAGACCGATTAGATCATATGCAGCACCCAACCTATACAGCTTCAACCCAGGGATCGCTTACCCTGTGTTCAACAGAAATGCTAGGTTTGAAATCAAGCCTGTAATGCTTCAAATGATTCAGAACGCCGGACAATTTAGCGGTCACCCTGGAGAAGATCCACATGAGCACATTAGAAGTTTCTACTCTATCTGTGCTTCCTTCCATTGCCAGACATCTCACCTGAAGAACTGA

mRNA sequence

ATGGCGAAGGCTCCGAAAGAAGTTCAATTTCAGCTGAATCGTGCGTTCAAACCCGAAGAACCTGAGAACAAGTTTATGAGTGACGGTGAACAGCCGCAATTCGAACTTGACCCTAAAATTGAGCGAACCTTTCGGCGTAATCGGCGAAGAGCAAGGCAAAGACAAGCAAGAAGAATGGAAAACAATAATAGAAATGCCCCTCTACCGCAAGCTGCCCAAGAACCAAACACCGCCTACATGGCACATGACTTGGACAGACCGATTAGATCATATGCAGCACCCAACCTATACAGCTTCAACCCAGGGATCGCTTACCCTGTGTTCAACAGAAATGCTAGGTTTGAAATCAAGCCTGTAATGCTTCAAATGATTCAGAACGCCGGACAATTTAGCGGTCACCCTGGAGAAGATCCACATGAGCACATTAGAAGTTTCTACTCTATCTGTGCTTCCTTCCATTGCCAGACATCTCACCTGAAGAACTGA

Coding sequence (CDS)

ATGGCGAAGGCTCCGAAAGAAGTTCAATTTCAGCTGAATCGTGCGTTCAAACCCGAAGAACCTGAGAACAAGTTTATGAGTGACGGTGAACAGCCGCAATTCGAACTTGACCCTAAAATTGAGCGAACCTTTCGGCGTAATCGGCGAAGAGCAAGGCAAAGACAAGCAAGAAGAATGGAAAACAATAATAGAAATGCCCCTCTACCGCAAGCTGCCCAAGAACCAAACACCGCCTACATGGCACATGACTTGGACAGACCGATTAGATCATATGCAGCACCCAACCTATACAGCTTCAACCCAGGGATCGCTTACCCTGTGTTCAACAGAAATGCTAGGTTTGAAATCAAGCCTGTAATGCTTCAAATGATTCAGAACGCCGGACAATTTAGCGGTCACCCTGGAGAAGATCCACATGAGCACATTAGAAGTTTCTACTCTATCTGTGCTTCCTTCCATTGCCAGACATCTCACCTGAAGAACTGA

Protein sequence

MAKAPKEVQFQLNRAFKPEEPENKFMSDGEQPQFELDPKIERTFRRNRRRARQRQARRMENNNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFHCQTSHLKN

Homology

[Close]

BLAST of PI0026293 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 9.9e-30
Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 62  NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVML 121
           NN+  P  QAAQ  N  Y+A D DRPIRSYA+PNLY FNPGIAYP F+ N RFEIK VML
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 122 QMIQNAGQFSGHPGEDPHEHIRSFYSICASFH 154
           Q+IQNAGQF  HP +DPH++IR+FYSICASFH
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFH 96

[Close]

BLAST of PI0026293 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.2e-28
Identity = 62/92 (67.39%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 62  NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVML 121
           NN+N P  Q  QE N AY+AHDLD+PI+SYA+PNLY FNPGIAY  F  N  FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 122 QMIQNAGQFSGHPGEDPHEHIRSFYSICASFH 154
            M QNAGQF GHP EDP++HIR+FY ICASF+
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFN 93

[Close]

BLAST of PI0026293 vs. ExPASy TrEMBL
Match: A0A5D3BVN1 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00390 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 61  NNNRNAPLPQAAQ-EPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPV 120
           N N   PL  A Q + N   +AH+LD PIR+Y + NLY FN GIAY VF  NA FE+KPV
Sbjct: 4   NKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEVKPV 63

Query: 121 MLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFH 154
           MLQMIQ AGQF G+ GEDPHEHI+SFYSICASFH
Sbjct: 64  MLQMIQKAGQFDGYQGEDPHEHIKSFYSICASFH 97

[Close]

BLAST of PI0026293 vs. ExPASy TrEMBL
Match: A0A5D3CAB5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00060 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 26  MSDGEQPQFELDPKIERTFRRNRRRARQRQARRMEN--NNRNAPLPQAAQEPNTAYMAHD 85
           MS+GEQP+F +D +IER F+RNRR+ ++RQ     N  NN+ AP  QA Q  N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 86  LDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMI 125
            DRPIRS  +PNLY FNPGI YP F  N RF+IKPVML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

[Close]

BLAST of PI0026293 vs. ExPASy TrEMBL
Match: A0A5A7UXZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00610 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 26  MSDGEQPQFELDPKIERTFRRNRRRARQRQARRMEN--NNRNAPLPQAAQEPNTAYMAHD 85
           MS+GEQP+F +D +IER F+RNRR+ ++RQ     N  NN+ AP  QA Q  N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 86  LDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMI 125
            DRPIRS  +PNLY FNPGI YP F  N RF+IKPVML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

[Close]

BLAST of PI0026293 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-29
Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 62  NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVML 121
           NN+  P  QAAQ  N  Y+A D DRPIRSYA+PNLY FNPGIAYP F+ N RFEIK VML
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 122 QMIQNAGQFSGHPGEDPHEHIRSFYSICASFH 154
           Q+IQNAGQF  HP +DPH++IR+FYSICASFH
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFH 96

[Close]

BLAST of PI0026293 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 6.6e-28
Identity = 62/92 (67.39%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 62  NNRNAPLPQAAQEPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVML 121
           NN+N P  Q  QE N AY+AHDLD+PI+SYA+PNLY FNPGIAY  F  N  FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 122 QMIQNAGQFSGHPGEDPHEHIRSFYSICASFH 154
            M QNAGQF GHP EDP++HIR+FY ICASF+
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFN 93

[Close]

BLAST of PI0026293 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-27
Identity = 70/145 (48.28%), Postives = 94/145 (64.83%), Query Frame = 0


Query: 25  FMSDGEQPQFELDPKIERTFRRNRRRARQRQARRMENNNRNAPL--PQAAQ--------- 84
           +MS+G+ P F++DP+IERTFRR  R+ +QR++ +    N +A    PQA Q         
Sbjct: 1   YMSEGDNPTFDIDPEIERTFRRRIRQIKQRRSNQTIEENMDAQYNQPQAPQAGVRQNANA 60

Query: 85  ------EPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMIQNA 144
                 + N   +AHD +RP+R YA+PNLY+F PGI  P F  N RFE+KPVMLQM+Q A
Sbjct: 61  QEHANYDTNPIVLAHDRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQMLQAA 120

Query: 145 GQFSGHPGEDPHEHIRSFYSICASF 153
           GQF G  GEDPH H++SF  IC++F
Sbjct: 121 GQFGGATGEDPHAHLKSFLEICSAF 145

[Close]

BLAST of PI0026293 vs. NCBI nr
Match: TYK02149.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-25
Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 61  NNNRNAPLPQAAQ-EPNTAYMAHDLDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPV 120
           N N   PL  A Q + N   +AH+LD PIR+Y + NLY FN GIAY VF  NA FE+KPV
Sbjct: 4   NKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEVKPV 63

Query: 121 MLQMIQNAGQFSGHPGEDPHEHIRSFYSICASFH 154
           MLQMIQ AGQF G+ GEDPHEHI+SFYSICASFH
Sbjct: 64  MLQMIQKAGQFDGYQGEDPHEHIKSFYSICASFH 97

[Close]

BLAST of PI0026293 vs. NCBI nr
Match: TYK08803.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 3.0e-20
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 26  MSDGEQPQFELDPKIERTFRRNRRRARQRQARRMEN--NNRNAPLPQAAQEPNTAYMAHD 85
           MS+GEQP+F +D +IER F+RNRR+ ++RQ     N  NN+ AP  QA Q  N  Y+AH+
Sbjct: 1   MSEGEQPKFVIDLEIERIFQRNRRQRKRRQRTNKSNSQNNQEAPANQAIQVVNLTYLAHN 60

Query: 86  LDRPIRSYAAPNLYSFNPGIAYPVFNRNARFEIKPVMLQMI 125
            DRPIRS  +PNLY FNPGI YP F  N RF+IKPVML ++
Sbjct: 61  RDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKPVMLSLL 101

The following BLAST results are available for this feature:

BLAST of PI0026293 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026293 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V2U7	9.9e-30	70.65	Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7UDN8	3.2e-28	67.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BVN1	1.1e-25	65.96	Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3CAB5	1.4e-20	56.44	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5A7UXZ2	1.4e-20	56.44	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]

BLAST of PI0026293 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062403.1	2.0e-29	70.65	putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0051815.1	6.6e-28	67.39	hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142...	[more]
WP_217833177.1	1.9e-27	48.28	retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70...	[more]
TYK02149.1	2.3e-25	65.96	putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa]	[more]
TYK08803.1	3.0e-20	56.44	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]

BLAST of PI0026293 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026293.1	PI0026293.1	mRNA