PI0026280 (gene) Melon (PI 482460) v1

Overview
NamePI0026280
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297 family
Locationchr02: 16490247 .. 16491838 (+)
RNA-Seq ExpressionPI0026280
SyntenyPI0026280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGTTTTAGAAGAAACGATCCACAAAGTATCTCCTACAACTCTAGATGGAGGGACCATCCAAATCTTAGGGAGGGTCCTCAAGAACCTAAACCTACCAACACTTCTTCTTCCTCATCATCATCACAAGGTACGTACTTAGAAGAGATCATTTCTAAATTAGCTCTTAGCTCAAATAGTTTCAAAATCGATTTTGAGAAAAATTTAGCTAAATTTAGTGAATAAACCGTTAATACATCTGGAGCCATTAGAAGTGACATAGATACTTTGAAAGCATCAATCATTGAGTTAGGGAATAAGTTTAATCAATTAGCAACACATGTCCTTAAAACAGAAGGAAAAAGCAAACTTCCCTCCCAACCTAACCATGAAAATGTGAGTGCTATCACTTTAAGAAGTAGCAAAATTTTGAATAAAAATGATGATATCTCCTTGACTCAAAGTGATCCAAATTTAGAAAAAGTCGATTCTAATGAAAAAAATGTACATACTAACCATTCTTCATCTAATGTTTCTTCTTCCTCTAATGTTTCTTCTTCCAATAATGATTCAAGAGACTTAGATGCTAATCCTCCATTTCCTTCTGGGCTTGCACCACCAAGGAAGGAAATCAAGAATGACGATGAAGTCTTCAAGAAGGTAGAAGTGAACCTTCCTCTCTTGACGGCAATCAAGAGCATATCGAGGTAGCAAAGTTTCTCAAAAAACTATGTACTCACAAGAGGAGGAGTAGGAGCCAAGAAAAAGCAACGGTTAGTAGAAATGTATCTTCTCTTTTAAAGAAAAATCTTCCAGAAAAATGTGTCGACCCAGGTATGTTTTCGCTCCCTTGTACAATAGGAAATAGAGACATATCTAGTGCAATGCTTGATCTAGGTGCATCCATTAATGTCATGCCTTTTAGCGTTTTCAAATACTTAGGACTAAATGGACTTGAAAAGACTAGTATATGCATACAATTAGCCTATCGGTCCTTCATTTCACCATTAAGGGTTGTAGAAGATGTCCTAGTTAAGGTAGGAAATCTAATATTCCCCGTTGATTTTTATATAATAGAAATGAACAATGAATATGCACGTACCTCACCTACCGTACTTTTAGGGAGACCATTCTTGAAAACCACTAAAGCCATAATCAACATAGATAAAGGCCTTCTTAGTGTTGAGTTTGACGGTGATATAGTGTCTTTCAATATTTTTTATGATGTAAAGTCTTCTAATGATCGGGTGTCATTGTGTGCACTTAATACTTTAGAATCATTAGAGTCATTAGAGACACTAGAAGAGCATGACAAAATTAATGAGTTTATTGATCAAGCAATTTTAGAGTACGTTGATAATGAATTTGCCAAGAACGAACCTAGTAATGATGATCTTTCTATTTTTCTTGACTTTGTTGGATGTGTAAATCAAGAACATGTTTTAGTTAATGGATTCGCACTTAATGGACAACATGTATCTAATAATGATTCTGCATATACCAATGAGCATGGCTTAGGTAAAAACCTTGATATAGATGATGAGCTTATTTTAGAATGCATTGACATTGATGATAGGCAAGACATAGACTTCCACAGTAAAGTTCGTTGA

mRNA sequence

ATGGGAGGTTTTAGAAGAAACGATCCACAAAGTATCTCCTACAACTCTAGATGGAGGGACCATCCAAATCTTAGGGAGGGTCCTCAAGAACCTAAACCTACCAACACTTCTTCTTCCTCATCATCATCACAAGAATCATTAGAGTCATTAGAGACACTAGAAGAGCATGACAAAATTAATGAGTTTATTGATCAAGCAATTTTAGAGTACGTTGATAATGAATTTGCCAAGAACGAACCTAGTAATGATGATCTTTCTATTTTTCTTGACTTTGTTGGATGTGTAAATCAAGAACATGTTTTAGTTAATGGATTCGCACTTAATGGACAACATGTATCTAATAATGATTCTGCATATACCAATGAGCATGGCTTAGGTAAAAACCTTGATATAGATGATGAGCTTATTTTAGAATGCATTGACATTGATGATAGGCAAGACATAGACTTCCACAGTAAAGTTCGTTGA

Coding sequence (CDS)

ATGGGAGGTTTTAGAAGAAACGATCCACAAAGTATCTCCTACAACTCTAGATGGAGGGACCATCCAAATCTTAGGGAGGGTCCTCAAGAACCTAAACCTACCAACACTTCTTCTTCCTCATCATCATCACAAGAATCATTAGAGTCATTAGAGACACTAGAAGAGCATGACAAAATTAATGAGTTTATTGATCAAGCAATTTTAGAGTACGTTGATAATGAATTTGCCAAGAACGAACCTAGTAATGATGATCTTTCTATTTTTCTTGACTTTGTTGGATGTGTAAATCAAGAACATGTTTTAGTTAATGGATTCGCACTTAATGGACAACATGTATCTAATAATGATTCTGCATATACCAATGAGCATGGCTTAGGTAAAAACCTTGATATAGATGATGAGCTTATTTTAGAATGCATTGACATTGATGATAGGCAAGACATAGACTTCCACAGTAAAGTTCGTTGA

Protein sequence

MGGFRRNDPQSISYNSRWRDHPNLREGPQEPKPTNTSSSSSSSQESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDDRQDIDFHSKVR
Homology
BLAST of PI0026280 vs. ExPASy TrEMBL
Match: A0A5D3CW21 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00170 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.5e-38
Identity = 100/185 (54.05%), Postives = 117/185 (63.24%), Query Frame = 0

Query: 1   MGGFRRNDPQSISYNSRWRDHPNLREGPQEPKPTNTSSSSSSSQ---------------- 60
           M GFRRND  S +YNS WRDHPNLR GPQEPKPTNTSSSSSSSQ                
Sbjct: 72  MEGFRRNDSHSNTYNSYWRDHPNLRWGPQEPKPTNTSSSSSSSQGLLSVEFDGNVVSCSI 131

Query: 61  ----------------ESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIF 120
                           ++LESL+ LEEHDK NE IDQA LE+V+NEFAKN+PS+DDLSIF
Sbjct: 132 FDDVKSSNVHVSLCALDTLESLKKLEEHDKFNELIDQATLEHVENEFAKNKPSDDDLSIF 191

Query: 121 LDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDDRQDI 154
           LDFV  VN E+VLV+  A N +HV  ND   +NEH  G+N+  D E IL+ I I++  D 
Sbjct: 192 LDFVTSVNDEYVLVDNIATN-EHVPENDFVSSNEHDQGRNIKDDSEHILKSIVIENDHDT 251

BLAST of PI0026280 vs. ExPASy TrEMBL
Match: A0A5A7V4I7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00430 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-26
Identity = 72/126 (57.14%), Postives = 90/126 (71.43%), Query Frame = 0

Query: 31  PKPTNTSSS---SSSSQESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSI 90
           P  T  SS+   S  + E+ ESLETLE+HD+ +E IDQA LEYV+NEFAKN+PS+DD+SI
Sbjct: 56  PLLTTKSSNDHLSLCALETFESLETLEKHDQFDELIDQATLEYVENEFAKNKPSDDDISI 115

Query: 91  FLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDDRQD 150
           FLDF   VN EHVLV+  A N QHV +ND AY+NEH LG+N+  DDE IL+ I I++  D
Sbjct: 116 FLDFFASVNDEHVLVDNIATNEQHVLDNDFAYSNEHDLGRNIKDDDEHILKSIGIENDHD 175

Query: 151 IDFHSK 154
              H K
Sbjct: 176 ASIHIK 181

BLAST of PI0026280 vs. ExPASy TrEMBL
Match: A0A5D3DU65 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold394G00010 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.5e-24
Identity = 61/100 (61.00%), Postives = 82/100 (82.00%), Query Frame = 0

Query: 45  ESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNG 104
           +++ESL+TL+EHD+ N+ I+QA LEY+DNEFAKN+PS+DDLSIFLDFV  VN EHVLV+ 
Sbjct: 171 DTIESLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLDFVASVNDEHVLVDN 230

Query: 105 FALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDD 145
            A N +HV +ND A +NEH LG+N++ DDE  L+ IDI++
Sbjct: 231 IATN-EHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIEN 269

BLAST of PI0026280 vs. ExPASy TrEMBL
Match: A0A5D3D5G7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00040 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = 0

Query: 46  SLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGF 105
           ++E  ET EEHDK NE  DQA L++V+ EFAKN+PSNDDLSIFLDFV  VN EHVLV+  
Sbjct: 176 NVEFGETQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNL 235

Query: 106 ALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECID 142
           A NG HV +ND A +NEH LG+N++ DDE  L+ ID
Sbjct: 236 ATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGID 271

BLAST of PI0026280 vs. ExPASy TrEMBL
Match: A0A5A7TE46 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00410 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 0

Query: 45  ESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNG 104
           ++LESL+T EEHDK NE IDQ  LEYV+NEFAKN+ S+DD SIFLDF   VN EH LV+ 
Sbjct: 235 DTLESLKTQEEHDKFNELIDQTTLEYVENEFAKNKLSDDDFSIFLDFFASVNDEHALVDN 294

Query: 105 FALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDD 145
            A NG H  +ND A +NEH LG+N++ D+E  L+ IDI++
Sbjct: 295 LATNGHHALDNDFASSNEHHLGRNINNDNEHTLKVIDIEN 334

BLAST of PI0026280 vs. NCBI nr
Match: KAA0042324.1 (Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa] >TYK15448.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 5.2e-38
Identity = 100/185 (54.05%), Postives = 117/185 (63.24%), Query Frame = 0

Query: 1   MGGFRRNDPQSISYNSRWRDHPNLREGPQEPKPTNTSSSSSSSQ---------------- 60
           M GFRRND  S +YNS WRDHPNLR GPQEPKPTNTSSSSSSSQ                
Sbjct: 72  MEGFRRNDSHSNTYNSYWRDHPNLRWGPQEPKPTNTSSSSSSSQGLLSVEFDGNVVSCSI 131

Query: 61  ----------------ESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIF 120
                           ++LESL+ LEEHDK NE IDQA LE+V+NEFAKN+PS+DDLSIF
Sbjct: 132 FDDVKSSNVHVSLCALDTLESLKKLEEHDKFNELIDQATLEHVENEFAKNKPSDDDLSIF 191

Query: 121 LDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDDRQDI 154
           LDFV  VN E+VLV+  A N +HV  ND   +NEH  G+N+  D E IL+ I I++  D 
Sbjct: 192 LDFVTSVNDEYVLVDNIATN-EHVPENDFVSSNEHDQGRNIKDDSEHILKSIVIENDHDT 251

BLAST of PI0026280 vs. NCBI nr
Match: KAA0063162.1 (hypothetical protein E6C27_scaffold381G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 3.5e-26
Identity = 72/126 (57.14%), Postives = 90/126 (71.43%), Query Frame = 0

Query: 31  PKPTNTSSS---SSSSQESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSI 90
           P  T  SS+   S  + E+ ESLETLE+HD+ +E IDQA LEYV+NEFAKN+PS+DD+SI
Sbjct: 56  PLLTTKSSNDHLSLCALETFESLETLEKHDQFDELIDQATLEYVENEFAKNKPSDDDISI 115

Query: 91  FLDFVGCVNQEHVLVNGFALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDDRQD 150
           FLDF   VN EHVLV+  A N QHV +ND AY+NEH LG+N+  DDE IL+ I I++  D
Sbjct: 116 FLDFFASVNDEHVLVDNIATNEQHVLDNDFAYSNEHDLGRNIKDDDEHILKSIGIENDHD 175

Query: 151 IDFHSK 154
              H K
Sbjct: 176 ASIHIK 181

BLAST of PI0026280 vs. NCBI nr
Match: KAA0066481.1 (Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK27317.1 Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 7.2e-24
Identity = 61/100 (61.00%), Postives = 82/100 (82.00%), Query Frame = 0

Query: 45  ESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNG 104
           +++ESL+TL+EHD+ N+ I+QA LEY+DNEFAKN+PS+DDLSIFLDFV  VN EHVLV+ 
Sbjct: 171 DTIESLQTLQEHDRFNDLINQATLEYIDNEFAKNKPSDDDLSIFLDFVASVNDEHVLVDN 230

Query: 105 FALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDD 145
            A N +HV +ND A +NEH LG+N++ DDE  L+ IDI++
Sbjct: 231 IATN-EHVLDNDFASSNEHDLGRNINNDDEHTLKGIDIEN 269

BLAST of PI0026280 vs. NCBI nr
Match: KAA0041704.1 (uncharacterized protein E6C27_scaffold67G00370 [Cucumis melo var. makuwa] >TYK06328.1 uncharacterized protein E5676_scaffold594G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 0

Query: 45  ESLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNG 104
           ++LESL+T EEHDK NE IDQ  LEYV+NEFAKN+ S+DD SIFLDF   VN EH LV+ 
Sbjct: 235 DTLESLKTQEEHDKFNELIDQTTLEYVENEFAKNKLSDDDFSIFLDFFASVNDEHALVDN 294

Query: 105 FALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECIDIDD 145
            A NG H  +ND A +NEH LG+N++ D+E  L+ IDI++
Sbjct: 295 LATNGHHALDNDFASSNEHHLGRNINNDNEHTLKVIDIEN 334

BLAST of PI0026280 vs. NCBI nr
Match: KAA0050551.1 (uncharacterized protein E6C27_scaffold673G00050 [Cucumis melo var. makuwa] >TYK18791.1 uncharacterized protein E5676_scaffold945G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = 0

Query: 46  SLESLETLEEHDKINEFIDQAILEYVDNEFAKNEPSNDDLSIFLDFVGCVNQEHVLVNGF 105
           ++E  ET EEHDK NE  DQA L++V+ EFAKN+PSNDDLSIFLDFV  VN EHVLV+  
Sbjct: 176 NVEFGETQEEHDKFNELFDQATLKHVEYEFAKNKPSNDDLSIFLDFVASVNDEHVLVDNL 235

Query: 106 ALNGQHVSNNDSAYTNEHGLGKNLDIDDELILECID 142
           A NG HV +ND A +NEH LG+N++ DDE  L+ ID
Sbjct: 236 ATNGHHVLDNDFASSNEHDLGRNINNDDEHTLKGID 271

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CW212.5e-3854.05Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo va... [more]
A0A5A7V4I71.7e-2657.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DU653.5e-2461.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3D5G71.5e-2262.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TE461.5e-2259.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0042324.15.2e-3854.05Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var.... [more]
KAA0063162.13.5e-2657.14hypothetical protein E6C27_scaffold381G00430 [Cucumis melo var. makuwa][more]
KAA0066481.17.2e-2461.00Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK27317.1 Retrotranspos... [more]
KAA0041704.13.0e-2259.00uncharacterized protein E6C27_scaffold67G00370 [Cucumis melo var. makuwa] >TYK06... [more]
KAA0050551.13.0e-2262.50uncharacterized protein E6C27_scaffold673G00050 [Cucumis melo var. makuwa] >TYK1... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0026280.1PI0026280.1mRNA