PI0026189 (gene) Melon (PI 482460) v1

Overview
NamePI0026189
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Locationchr08: 11242453 .. 11242620 (-)
RNA-Seq ExpressionPI0026189
SyntenyPI0026189
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTCATTAAAGATTATGATTGCACTATCGCATATCACCCTGGAAAAGTTAACGTGGTAGTGGATGCATTGAGCAGAAAGAGCTTCAATAAGGGAAGAGTAGCCTTGCTGAAGGAACTAAGAAGTTGCAATGCGATTTTAAACACGGGAACTGTGGGAATTTGA

mRNA sequence

ATGGAACTCATTAAAGATTATGATTGCACTATCGCATATCACCCTGGAAAAGTTAACGTGGTAGTGGATGCATTGAGCAGAAAGAGCTTCAATAAGGGAAGAGTAGCCTTGCTGAAGGAACTAAGAAGTTGCAATGCGATTTTAAACACGGGAACTGTGGGAATTTGA

Coding sequence (CDS)

ATGGAACTCATTAAAGATTATGATTGCACTATCGCATATCACCCTGGAAAAGTTAACGTGGTAGTGGATGCATTGAGCAGAAAGAGCTTCAATAAGGGAAGAGTAGCCTTGCTGAAGGAACTAAGAAGTTGCAATGCGATTTTAAACACGGGAACTGTGGGAATTTGA

Protein sequence

MELIKDYDCTIAYHPGKVNVVVDALSRKSFNKGRVALLKELRSCNAILNTGTVGI
Homology
BLAST of PI0026189 vs. ExPASy TrEMBL
Match: A0A5A7VIK8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002810 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.4e-12
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 1  MELIKDYDCTIAYHPGKVNVVVDALSRKSF---NKGRVALLKELRSCNAILNTGTVG 55
          M+LIKDYDCTIAY+P KVNV+ DALSRKS    NKGR+ALLK+LR    +LN GT G
Sbjct: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFG 57

BLAST of PI0026189 vs. ExPASy TrEMBL
Match: A0A5A7UMR3 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00250 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.0e-11
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 1  MELIKDYDCTIAYHPGKVNVVVDALSRKSFN---KGRVALLKELRSCNAILNTGTVG 55
          MELIKDY+ TIAYHPGK NVV +ALSRK+ +   KGR+A +KELR C  ILNTG  G
Sbjct: 1  MELIKDYNYTIAYHPGKANVVANALSRKNPSTEIKGRIAFVKELRCCKEILNTGLAG 57

BLAST of PI0026189 vs. ExPASy TrEMBL
Match: A0A5D3DMM3 (CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001300 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 1  MELIKDYDCTIAYHPGKVNVVVDALSRKSF---NKGRVALLKELRSCNAILNTGTVG 55
          MELIKDYDCTI YH GK NV  DALSRKS    NKG++ALL ELR C  ILN   +G
Sbjct: 40 MELIKDYDCTILYHLGKANVAADALSRKSSSKENKGKLALLWELRDCKTILNARLIG 96

BLAST of PI0026189 vs. ExPASy TrEMBL
Match: A0A5A7SUU4 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00340 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 1  MELIKDYDCTIAYHPGKVNVVVDALSRKSF---NKGRVALLKELRSCNAILNTGTVG 55
          MELIKD+DCTI YH  K NVV D LSRKSF   + GR+ALL+ELR   + +++G+VG
Sbjct: 15 MELIKDFDCTIVYHTSKANVVADVLSRKSFDIESGGRIALLQELRDYKSTMSSGSVG 71

BLAST of PI0026189 vs. ExPASy TrEMBL
Match: A0A5A7SL18 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00020 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 1   MELIKDYDCTIAYHPGKVNVVVDALSRKS-FNKG-----RVALLKELRSCNAILNTGTVG 55
           +ELIKDYDCTI YHPGK NV+ DALSRKS  +K      RVALL ELRS  A++ T   G
Sbjct: 377 LELIKDYDCTIEYHPGKANVIADALSRKSRLSKSALCGIRVALLNELRSSKAVVPTEDSG 436

BLAST of PI0026189 vs. NCBI nr
Match: KAA0067194.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 1  MELIKDYDCTIAYHPGKVNVVVDALSRKSF---NKGRVALLKELRSCNAILNTGTVG 55
          M+LIKDYDCTIAY+P KVNV+ DALSRKS    NKGR+ALLK+LR    +LN GT G
Sbjct: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFG 57

BLAST of PI0026189 vs. NCBI nr
Match: KAA0054749.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 1  MELIKDYDCTIAYHPGKVNVVVDALSRKSFN---KGRVALLKELRSCNAILNTGTVG 55
          MELIKDY+ TIAYHPGK NVV +ALSRK+ +   KGR+A +KELR C  ILNTG  G
Sbjct: 1  MELIKDYNYTIAYHPGKANVVANALSRKNPSTEIKGRIAFVKELRCCKEILNTGLAG 57

BLAST of PI0026189 vs. NCBI nr
Match: KAA0059914.1 (CCHC-type integrase [Cucumis melo var. makuwa] >TYK24861.1 CCHC-type integrase [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 2.1e-10
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 1  MELIKDYDCTIAYHPGKVNVVVDALSRKSF---NKGRVALLKELRSCNAILNTGTVG 55
          MELIKDYDCTI YH GK NV  DALSRKS    NKG++ALL ELR C  ILN   +G
Sbjct: 40 MELIKDYDCTILYHLGKANVAADALSRKSSSKENKGKLALLWELRDCKTILNARLIG 96

BLAST of PI0026189 vs. NCBI nr
Match: KAA0035002.1 (polyprotein [Cucumis melo var. makuwa] >TYK02342.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 5.2e-09
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 1  MELIKDYDCTIAYHPGKVNVVVDALSRKSF---NKGRVALLKELRSCNAILNTGTVG 55
          MELIKD+DCTI YH  K NVV D LSRKSF   + GR+ALL+ELR   + +++G+VG
Sbjct: 15 MELIKDFDCTIVYHTSKANVVADVLSRKSFDIESGGRIALLQELRDYKSTMSSGSVG 71

BLAST of PI0026189 vs. NCBI nr
Match: KAA0025165.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 2.6e-08
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 1   MELIKDYDCTIAYHPGKVNVVVDALSRKS-FNKG-----RVALLKELRSCNAILNTGTVG 55
           +ELIKDYDCTI YHPGK NV+ DALSRKS  +K      RVALL ELRS  A++ T   G
Sbjct: 377 LELIKDYDCTIEYHPGKANVIADALSRKSRLSKSALCGIRVALLNELRSSKAVVPTEDSG 436

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VIK85.4e-1268.42Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002810 PE... [more]
A0A5A7UMR36.0e-1166.67DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3DMM31.0e-1066.67CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G... [more]
A0A5A7SUU42.5e-0959.65Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00340 PE... [more]
A0A5A7SL181.3e-0861.67DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
KAA0067194.11.1e-1168.42polyprotein [Cucumis melo var. makuwa][more]
KAA0054749.11.2e-1066.67DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0059914.12.1e-1066.67CCHC-type integrase [Cucumis melo var. makuwa] >TYK24861.1 CCHC-type integrase [... [more]
KAA0035002.15.2e-0959.65polyprotein [Cucumis melo var. makuwa] >TYK02342.1 polyprotein [Cucumis melo var... [more]
KAA0025165.12.6e-0861.67DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0026189.1PI0026189.1mRNA