PI0026110 (gene) Melon (PI 482460) v1

Overview


Name	PI0026110
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	50S ribosomal protein L18-like
Location	chr06: 2222068 .. 2223831 (+)
RNA-Seq Expression	PI0026110
Synteny	PI0026110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTAAGCACATCAATTCCCGATTCATCTTCATCAGCCACACTACTTTCCAGTTTCCTTCAGAAACCCACTTCTAGTTCATGGTCATCTTCTTCTTCCAAGCTCTCCATCTCCTTCGACGCCATTAAAGCACCTTCTCTTTCAACTCACAATACAGTACGTTTTCTCTCTTTTACTCCACTTTCAGTCAGCCGTGCATTTCTCTGTCTTCCCTGCGAAAACGAACATAAAAGGAAAAAAAAAAAAAGAAAAGGAAAACAATCTCAATTTCGAAGAACTGATGGAATTTTTTCGAAACTAATCGCGAATGCTGGTTTGACTGTGGTGCTCGTTCGGGCAATCTGTATAGTTACATTGTTTTGGAGAGACTATGAACTTGAATACAAAGGCTTTCGAATACCTCGACTGTTACGAGGATTATGCAGCAGCCATGGTGTTCGACGAAATGTCTAGTAAAAAGGAAACTAGTTTTTCCATCGTTTTGTGACGAGAATAGTTGAGGAATTTTTGGGTTTAGCAAATGACTAATCAGCGTTCCAACCTGGGTAAAATTATGATTTGAGTTTCGTGGATTCTTTAGGATATAACAGAAGATGTTTCAACAACATATCCATGTTTGATACCATATTCTGTAGGTCAAAGTCCTATTTAGAAGTTTAGATCAGACAGAGATGGCTATGGCAAATAATACTTATTAGACAAAGGTACGTGACCAAAGTCTCACATTGACTAATAGGAGAAGATCGTCTTCATCCATGCGAGTTCTTCCAAGGGAAAGTAAAACTAAAAGCAAAACTATGAAAATCTATACAAAAAATCGGATATATCATATCGTTGTTGAGATGTTGGAGAGGTCTATTGTCAATAACATCATAGTATGTCTTGAGCTTAATTGTAGCATTAGAATCATTGGTTGCCTAAGAATGAAATAGTCAGCTTCAATGACATGGTCACATGGGAGATCTACAGGTAACCATTGATTGACCAAGTACTCCAAAAAAGTGTTGCTTCGAAGGGAGGATAGTTGGGAGTGCAATCAAAAATCCTATATAGGCTAACAAAGTAGAATACTATAGTATCTAGGTGAGGAGAATTGTTTTTGCTAACATACACGAAGTCTTTTAGGTTAATCCAAAGAAAATAATATCATATCAACTGTGGAGATGTTGAAGAGGTAAGTTGTCCACACTTCAAATGAAAATGAAAATGAAAATTTAGACACTTAAGCTTAAAACCTACAGGTATAAGACTGTTGGAGGACGCAAACCCCGACTGGTTCCACATTATGCAAGTCTTGAACTCAGAACATTCATGAAAGAAGAAAATAGTTCATGGAGCTTACGACTTACTTTCATTTTGCAGAAGTCATTGATTAAAGCAGCAGCCTGGACGCGAAGATCTCGAGGAGAAGCTGCAAAAAGAGGGAATAAGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTTTACTTTTCAAGGAGGTTCATACATGCCAAAGTGATGCATCGAGGAACAAGCAAGGTTGTTTCAGCAGCAAGCACTAATTGCAAGGATTTAAGGTATTCATTACCATCATCCACTGATGACAATGCCTGTAGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTGTTTGCAATGTCTTATGATCCTCCAAACATGGAAAGAATTCAAGGCAAAGTTGGAATTGTTATTGATACTATTAAGGAGAATGGTATTATATTTGTATAG

mRNA sequence

ATGTTGTTAAGCACATCAATTCCCGATTCATCTTCATCAGCCACACTACTTTCCAGTTTCCTTCAGAAACCCACTTCTAGTTCATGGTCATCTTCTTCTTCCAAGCTCTCCATCTCCTTCGACGCCATTAAAGCACCTTCTCTTTCAACTCACAATACAAAGTCATTGATTAAAGCAGCAGCCTGGACGCGAAGATCTCGAGGAGAAGCTGCAAAAAGAGGGAATAAGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTTTACTTTTCAAGGAGGTTCATACATGCCAAAGTGATGCATCGAGGAACAAGCAAGGTTGTTTCAGCAGCAAGCACTAATTGCAAGGATTTAAGGTATTCATTACCATCATCCACTGATGACAATGCCTGTAGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTGTTTGCAATGTCTTATGATCCTCCAAACATGGAAAGAATTCAAGGCAAAGTTGGAATTGTTATTGATACTATTAAGGAGAATGGTATTATATTTGTATAG

Coding sequence (CDS)

ATGTTGTTAAGCACATCAATTCCCGATTCATCTTCATCAGCCACACTACTTTCCAGTTTCCTTCAGAAACCCACTTCTAGTTCATGGTCATCTTCTTCTTCCAAGCTCTCCATCTCCTTCGACGCCATTAAAGCACCTTCTCTTTCAACTCACAATACAAAGTCATTGATTAAAGCAGCAGCCTGGACGCGAAGATCTCGAGGAGAAGCTGCAAAAAGAGGGAATAAGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTTTACTTTTCAAGGAGGTTCATACATGCCAAAGTGATGCATCGAGGAACAAGCAAGGTTGTTTCAGCAGCAAGCACTAATTGCAAGGATTTAAGGTATTCATTACCATCATCCACTGATGACAATGCCTGTAGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTGTTTGCAATGTCTTATGATCCTCCAAACATGGAAAGAATTCAAGGCAAAGTTGGAATTGTTATTGATACTATTAAGGAGAATGGTATTATATTTGTATAG

Protein sequence

MLLSTSIPDSSSSATLLSSFLQKPTSSSWSSSSSKLSISFDAIKAPSLSTHNTKSLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKENGIIFV

Homology

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BLAST of PI0026110 vs. ExPASy Swiss-Prot
Match: Q5P316 (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rplR PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 39/121 (32.23%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 64  RRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKD 123
           RR+R   AK    KS +           L V+ +   I+A+V+    S+V++AAST   D
Sbjct: 9   RRARKTRAKIAELKSVR-----------LTVFRTNSHIYAQVIDGSGSRVLAAASTVEAD 68

Query: 124 LRYSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKENGII 183
           +R  LP+  +  A +++G LIAER K A V A+++D    +   G+V  + +  +E G+ 
Sbjct: 69  VRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFDRAGFQ-YHGRVKALAEAAREGGLK 117

Query: 184 F 185
           F
Sbjct: 129 F 117

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BLAST of PI0026110 vs. ExPASy Swiss-Prot
Match: A9BG02 (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=403833 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.0e-06
Identity = 34/121 (28.10%), Postives = 65/121 (53.72%), Query Frame = 0


Query: 72  KRGNKKSWKQRTDMYMRPFV--------LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKD 131
           K+ +KK+ +Q+  + +R  V        L V+ S++ I+A+++       +++AST  K 
Sbjct: 3   KQLDKKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQ 62

Query: 132 LRYSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKENGII 185
           L+  L  + D+NA + +G LIAE+ KE  +  + +D     +  GKV  + +  +E G+ 
Sbjct: 63  LKEKLEKTWDENAAKEVGKLIAEKAKEKGITEIVFDRSGY-KYHGKVKALAEAARETGLK 122

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BLAST of PI0026110 vs. ExPASy Swiss-Prot
Match: B5ZYV1 (50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) OX=395492 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.0e-06
Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 66  SRGEA-AKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDL 125
           SR EA A+R N+     ++    RP  L V+ S + I+A+V+     K ++AAST  KDL
Sbjct: 3   SRKEALARRANRVRRHLKSVANGRP-RLSVHRSSKNIYAQVIDDVAGKTLAAASTLDKDL 62

Query: 126 RYSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKENGIIF 185
           R SL +  D  A  ++G L+AER  +A V  + +D        G++  + D  +E G+ F
Sbjct: 63  RGSLKTGADTAAAALVGKLVAERASKAGVTDVVFD-RGAFIYHGRIKALADAAREGGLTF 120

[Close]

BLAST of PI0026110 vs. ExPASy Swiss-Prot
Match: Q11HR8 (50S ribosomal protein L18 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplR PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-05
Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 92  LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSSTDDNACRIIGNLIAERCKEA 151
           L VY S + I+A+V+       ++AAS+  KDLR  L +  D +A  ++G LIAER K+A
Sbjct: 28  LSVYRSSKHIYAQVIDDVKGHTLAAASSLDKDLREKLKTGADVDAAGVVGKLIAERAKKA 87

Query: 152 DVFAMSYDPPNMERIQGKVGIVIDTIKENGIIF 185
            +  + +D        G+V  + D  +E G+ F
Sbjct: 88  GIDKVVFD-RGPYIYHGRVKALADAAREGGLEF 119

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BLAST of PI0026110 vs. ExPASy Swiss-Prot
Match: B0U0X3 (50S ribosomal protein L18 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017 / FSC 153 / O#319-036) OX=484022 GN=rplR PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.9e-05
Identity = 29/93 (31.18%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 92  LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSSTDDNACRIIGNLIAERCKEA 151
           L VY + R ++A+V+    S V++AAST  KD++     + + N+  I+G +IA RCKE 
Sbjct: 26  LCVYRTPRHVYAQVISGDGSTVLAAASTVEKDVKAKCKYTGNVNSAAIVGEVIANRCKEK 85

Query: 152 DVFAMSYDPPNMERIQGKVGIVIDTIKENGIIF 185
            +  +++D     +  G+V  + +  +E+G+ F
Sbjct: 86  GISQVAFDRSGY-KYHGRVKALAEAAREHGLQF 117

[Close]

BLAST of PI0026110 vs. ExPASy TrEMBL
Match: A0A1S3AVM4 (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.2e-89
Identity = 179/185 (96.76%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 1   MLLSTSIPDSSSSATLLSSFLQKPTSSSWSSSSSKLSISFDAIKAPSLSTHNTKSLIKAA 60
           MLLSTSIP+SSSSATLLSSFLQKPTSSSWSSS SKLSISFDAIKAPSLSTHNTKSLIKAA
Sbjct: 1   MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA 60

Query: 61  AWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120
           AWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN
Sbjct: 61  AWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120

Query: 121 CKDLRYSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKEN 180
           CKDLRYSLPS +DDNACRIIGNLIAERCKEADVFAMSYDPP+MERIQ KVGIVIDTIKEN
Sbjct: 121 CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN 180

Query: 181 GIIFV 186
           GIIFV
Sbjct: 181 GIIFV 185

[Close]

BLAST of PI0026110 vs. ExPASy TrEMBL
Match: A0A5A7U4A4 (50S ribosomal protein L18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003310 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MLLSTSIPDSSSSATLLSSFLQKPTSSSWSSSSSKLSISFDAIKAPSLSTHNTKSLIKAA 60
           MLLSTSIP+SSSSATLLSSFLQKPTSSSWSSS SKLSISFDAIKAPSLSTHNTKSLIKAA
Sbjct: 1   MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA 60

Query: 61  AWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120
           AWTRRSRGEAAK GNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN
Sbjct: 61  AWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120

Query: 121 CKDLRYSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKEN 180
           CKDLRYSLPS +DDNACRIIGNLIAERCKEADVFAMSYDPP+MERIQ KVGIVIDTIKEN
Sbjct: 121 CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN 180

Query: 181 GIIFV 186
           GIIFV
Sbjct: 181 GIIFV 185

[Close]

BLAST of PI0026110 vs. ExPASy TrEMBL
Match: A0A0A0L7S5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127780 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 7.7e-87
Identity = 177/186 (95.16%), Postives = 180/186 (96.77%), Query Frame = 0


Query: 1   MLLSTSIPDSSSS-ATLLSSFLQKPTSSSWSSSSSKLSISFDAIKAPSLSTHNTKSLIKA 60
           MLLSTSIP+SSSS ATL+SSFL KPTSSSWSSS SKLSISFDAIKAPSLSTHNTK LIKA
Sbjct: 1   MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKA 60

Query: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120
           AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST
Sbjct: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120

Query: 121 NCKDLRYSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKE 180
           NCKDLRYSLPS TDDNACRIIGNLIAERCKEADVFAMSYDPP+MERIQ KVGIVIDTIKE
Sbjct: 121 NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180

Query: 181 NGIIFV 186
           NGIIFV
Sbjct: 181 NGIIFV 186

[Close]

BLAST of PI0026110 vs. ExPASy TrEMBL
Match: A0A6J1CZ23 (uncharacterized protein LOC111016081 OS=Momordica charantia OX=3673 GN=LOC111016081 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.2e-68
Identity = 143/183 (78.14%), Postives = 155/183 (84.70%), Query Frame = 0


Query: 3   LSTSIPDSSSSATLLSSFLQKPTSSSWSSSSSKLSISFDAIKAPSLSTHNTKSLIKAAAW 62
           LS+S      SA LL+ F+QKPTS SW SS  KL ISFDAI AP  STH+  S I+ AAW
Sbjct: 10  LSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIR-AAW 69

Query: 63  TRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCK 122
           TRRSRGEAAKR N+KSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKVVSAASTN K
Sbjct: 70  TRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSK 129

Query: 123 DLRYSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKENGI 182
           DLRYSLPS TDDNACRIIGN+IAERCKEADVF MSY+PP  ERI+GK+ IVIDTIKENGI
Sbjct: 130 DLRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGI 189

Query: 183 IFV 186
           +FV
Sbjct: 190 LFV 191

[Close]

BLAST of PI0026110 vs. ExPASy TrEMBL
Match: A0A6J1FBY3 (uncharacterized protein LOC111444022 OS=Cucurbita moschata OX=3662 GN=LOC111444022 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 8.1e-68
Identity = 149/192 (77.60%), Postives = 162/192 (84.38%), Query Frame = 0


Query: 3   LSTSIPDSSS--------SATLLSSFLQKPTSS-SWSSSSSKLSISFDAIKAPSLSTHNT 62
           LS+SIP SSS        SATLLS F+QKPT+S SW SS SKLSI   AIK PS STHN 
Sbjct: 4   LSSSIPGSSSWSASVHPPSATLLSGFIQKPTTSLSWPSSFSKLSI---AIKPPSPSTHNR 63

Query: 63  KSLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 122
            S+I+ AAWTRRSRGE +KR N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV
Sbjct: 64  NSIIQ-AAWTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 123

Query: 123 VSAASTNCKDLRYSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIV 182
           VSAASTNCKDLRYSLPS TDDNACRIIGNLIAERCKEADVF +SYDPP   +I+GK+ IV
Sbjct: 124 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIV 183

Query: 183 IDTIKENGIIFV 186
           ID IK+NGI+FV
Sbjct: 184 IDAIKDNGILFV 191

[Close]

BLAST of PI0026110 vs. NCBI nr
Match: XP_008438261.1 (PREDICTED: 50S ribosomal protein L18-like [Cucumis melo])

HSP 1 Score: 338.2 bits (866), Expect = 4.5e-89
Identity = 179/185 (96.76%), Postives = 182/185 (98.38%), Query Frame = 0


Query: 1   MLLSTSIPDSSSSATLLSSFLQKPTSSSWSSSSSKLSISFDAIKAPSLSTHNTKSLIKAA 60
           MLLSTSIP+SSSSATLLSSFLQKPTSSSWSSS SKLSISFDAIKAPSLSTHNTKSLIKAA
Sbjct: 1   MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA 60

Query: 61  AWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120
           AWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN
Sbjct: 61  AWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120

Query: 121 CKDLRYSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKEN 180
           CKDLRYSLPS +DDNACRIIGNLIAERCKEADVFAMSYDPP+MERIQ KVGIVIDTIKEN
Sbjct: 121 CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN 180

Query: 181 GIIFV 186
           GIIFV
Sbjct: 181 GIIFV 185

[Close]

BLAST of PI0026110 vs. NCBI nr
Match: KAA0049096.1 (50S ribosomal protein L18-like [Cucumis melo var. makuwa] >TYK17467.1 50S ribosomal protein L18-like [Cucumis melo var. makuwa])

HSP 1 Score: 335.9 bits (860), Expect = 2.2e-88
Identity = 178/185 (96.22%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MLLSTSIPDSSSSATLLSSFLQKPTSSSWSSSSSKLSISFDAIKAPSLSTHNTKSLIKAA 60
           MLLSTSIP+SSSSATLLSSFLQKPTSSSWSSS SKLSISFDAIKAPSLSTHNTKSLIKAA
Sbjct: 1   MLLSTSIPESSSSATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKSLIKAA 60

Query: 61  AWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120
           AWTRRSRGEAAK GNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN
Sbjct: 61  AWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTN 120

Query: 121 CKDLRYSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKEN 180
           CKDLRYSLPS +DDNACRIIGNLIAERCKEADVFAMSYDPP+MERIQ KVGIVIDTIKEN
Sbjct: 121 CKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKEN 180

Query: 181 GIIFV 186
           GIIFV
Sbjct: 181 GIIFV 185

[Close]

BLAST of PI0026110 vs. NCBI nr
Match: XP_011650830.1 (uncharacterized protein LOC101221429 [Cucumis sativus] >KGN56667.1 hypothetical protein Csa_010165 [Cucumis sativus])

HSP 1 Score: 329.7 bits (844), Expect = 1.6e-86
Identity = 177/186 (95.16%), Postives = 180/186 (96.77%), Query Frame = 0


Query: 1   MLLSTSIPDSSSS-ATLLSSFLQKPTSSSWSSSSSKLSISFDAIKAPSLSTHNTKSLIKA 60
           MLLSTSIP+SSSS ATL+SSFL KPTSSSWSSS SKLSISFDAIKAPSLSTHNTK LIKA
Sbjct: 1   MLLSTSIPESSSSAATLVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHNTKFLIKA 60

Query: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120
           AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST
Sbjct: 61  AAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAAST 120

Query: 121 NCKDLRYSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKE 180
           NCKDLRYSLPS TDDNACRIIGNLIAERCKEADVFAMSYDPP+MERIQ KVGIVIDTIKE
Sbjct: 121 NCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIVIDTIKE 180

Query: 181 NGIIFV 186
           NGIIFV
Sbjct: 181 NGIIFV 186

[Close]

BLAST of PI0026110 vs. NCBI nr
Match: XP_038905466.1 (50S ribosomal protein L18-like [Benincasa hispida])

HSP 1 Score: 299.3 bits (765), Expect = 2.3e-77
Identity = 162/191 (84.82%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 2   LLSTSIPDSSSS-------ATLLSSFLQKPTSSSWSSSSSKLSISFDAIKAPSLSTHNTK 61
           +LSTSIP+SSSS       ATLLS F+QKPTS SW SS SKLSISF AIKAPSLSTH+ K
Sbjct: 1   MLSTSIPESSSSASAFRPTATLLSGFIQKPTSLSWPSSFSKLSISFVAIKAPSLSTHHRK 60

Query: 62  SLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 121
           SLI+ +AWTRRSRGEAAKRGN+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV
Sbjct: 61  SLIQ-SAWTRRSRGEAAKRGNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 120

Query: 122 SAASTNCKDLRYSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVI 181
           SAASTNCKDLRYSL S TD+NACRIIGNLIAERCKEADVF MSYDPP+MERIQGK+GIVI
Sbjct: 121 SAASTNCKDLRYSLLSPTDENACRIIGNLIAERCKEADVFVMSYDPPDMERIQGKIGIVI 180

Query: 182 DTIKENGIIFV 186
           DTIK+NGI+FV
Sbjct: 181 DTIKKNGILFV 190

[Close]

BLAST of PI0026110 vs. NCBI nr
Match: XP_022147050.1 (uncharacterized protein LOC111016081 [Momordica charantia])

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-67
Identity = 143/183 (78.14%), Postives = 155/183 (84.70%), Query Frame = 0


Query: 3   LSTSIPDSSSSATLLSSFLQKPTSSSWSSSSSKLSISFDAIKAPSLSTHNTKSLIKAAAW 62
           LS+S      SA LL+ F+QKPTS SW SS  KL ISFDAI AP  STH+  S I+ AAW
Sbjct: 10  LSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDRNSFIR-AAW 69

Query: 63  TRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCK 122
           TRRSRGEAAKR N+KSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKVVSAASTN K
Sbjct: 70  TRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKVVSAASTNSK 129

Query: 123 DLRYSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKENGI 182
           DLRYSLPS TDDNACRIIGN+IAERCKEADVF MSY+PP  ERI+GK+ IVIDTIKENGI
Sbjct: 130 DLRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIVIDTIKENGI 189

Query: 183 IFV 186
           +FV
Sbjct: 190 LFV 191

[Close]

BLAST of PI0026110 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-49
Identity = 106/180 (58.89%), Postives = 135/180 (75.00%), Query Frame = 0


Query: 6   SIPDSSSSATLLSSFLQKPTSSSWSSSSSKLSISFDAIKAPSLSTHNTKSLIKAAAWTRR 65
           S+    S+ T  + F +  ++ SW SS  KLSI   ++ +  +     K     AAWTRR
Sbjct: 10  SLVPFDSNLTRSNRFTKLGSAVSWQSSFPKLSIEIGSVISSPIV---KKDSFVQAAWTRR 69

Query: 66  SRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLR 125
           SRGEAAKR N+KSWKQRTDMYMRPF+L+V+FSR+FIHAKVMHR TSKV+S A+TN +D+R
Sbjct: 70  SRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIR 129

Query: 126 YSLPSSTDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKENGIIFV 185
            ++PS  D+ ACR+IG LIAER  EADV+A+SY+P   ERI+GK+GIVIDTIKE+GIIFV
Sbjct: 130 TNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGIIFV 186

[Close]

BLAST of PI0026110 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-22
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 78  SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSSTDDNAC 137
           S+KQRT  YM PF LDV+ S+RF+ A + HR T + V+ A TN KD++  L S  D  AC
Sbjct: 78  SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPAC 137

Query: 138 RIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKENGI 183
             IG +++ER KEADV+  SY P + ++ +GK+  V+ ++ +NGI
Sbjct: 138 MSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 182

[Close]

BLAST of PI0026110 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-22
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 78  SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSSTDDNAC 137
           S+KQRT  YM PF LDV+ S+RF+ A + HR T + V+ A TN KD++  L S  D  AC
Sbjct: 123 SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPAC 182

Query: 138 RIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKENGI 183
             IG +++ER KEADV+  SY P + ++ +GK+  V+ ++ +NGI
Sbjct: 183 MSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of PI0026110 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.5e-15
Identity = 39/111 (35.14%), Postives = 67/111 (60.36%), Query Frame = 0


Query: 72  KRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSS 131
           KR    ++ Q T  +  PF LD+Y S+  + A V+HR TSKVV+ A +  KD+++ L S 
Sbjct: 180 KRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSR 239

Query: 132 TDDNACRIIGNLIAERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKENGI 183
            +  AC  +G ++A+R  E D+  + Y P   ++I+GK+ +V+  + +NG+
Sbjct: 240 RNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]

BLAST of PI0026110 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 34/97 (35.05%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 86  YMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSSTDDNACRIIGNLIA 145
           Y++P+VL ++F+ +F+HA+V+H  T+ V  +AS+  K LR ++  + D  A   IG ++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 146 ERCKEADVFAMSYDPPNMERIQGKVGIVIDTIKENGI 183
           ER    D+ A++      +R  GKV  VID+++E G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

The following BLAST results are available for this feature:

BLAST of PI0026110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5P316	1.0e-06	32.23	50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rp...	[more]
A9BG02	5.0e-06	28.10	50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=4038...	[more]
B5ZYV1	5.0e-06	34.17	50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM230...	[more]
Q11HR8	1.4e-05	34.41	50S ribosomal protein L18 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplR P...	[more]
B0U0X3	1.9e-05	31.18	50S ribosomal protein L18 OS=Francisella philomiragia subsp. philomiragia (strai...	[more]

BLAST of PI0026110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AVM4	2.2e-89	96.76	50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1	[more]
A0A5A7U4A4	1.1e-88	96.22	50S ribosomal protein L18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0L7S5	7.7e-87	95.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127780 PE=4 SV=1	[more]
A0A6J1CZ23	6.2e-68	78.14	uncharacterized protein LOC111016081 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1FBY3	8.1e-68	77.60	uncharacterized protein LOC111444022 OS=Cucurbita moschata OX=3662 GN=LOC1114440...	[more]

BLAST of PI0026110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438261.1	4.5e-89	96.76	PREDICTED: 50S ribosomal protein L18-like [Cucumis melo]	[more]
KAA0049096.1	2.2e-88	96.22	50S ribosomal protein L18-like [Cucumis melo var. makuwa] >TYK17467.1 50S riboso...	[more]
XP_011650830.1	1.6e-86	95.16	uncharacterized protein LOC101221429 [Cucumis sativus] >KGN56667.1 hypothetical ...	[more]
XP_038905466.1	2.3e-77	84.82	50S ribosomal protein L18-like [Benincasa hispida]	[more]
XP_022147050.1	1.3e-67	78.14	uncharacterized protein LOC111016081 [Momordica charantia]	[more]

BLAST of PI0026110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20230.1	1.3e-49	58.89	Ribosomal L18p/L5e family protein	[more]
AT1G08845.1	5.1e-22	45.71	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	5.1e-22	45.71	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	3.5e-15	35.14	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	1.6e-12	35.05	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 41..185 e-value: 6.0E-18 score: 67.1
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 83..184 e-value: 4.4E-10 score: 39.9
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 14..184
None	No IPR available	PANTHER	PTHR12899:SF16	OS02G0689700 PROTEIN	coord: 14..184
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 79..182 e-value: 6.68456E-19 score: 75.6543
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 86..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026110.1	PI0026110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome