PI0026070 (gene) Melon (PI 482460) v1

Overview


Name	PI0026070
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr06: 10416273 .. 10417655 (+)
RNA-Seq Expression	PI0026070
Synteny	PI0026070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAAACCCAAATCAGCCCCATTCATCACCAAAATCAGCCTCCTGATTTAGAATCAAACCCAGTCGTCCCACTCCTGTCGTCCGCCGAAAACCCACCGCCAAATCAAACCCGTCTGCTGAAATATCCTCCGAAAACCCGTCCGCCAAATCAAATACCACCGCCAAATCAAACCCGTCCCTCTCCTCTCGCCCGCTTAATACAGATCCAATCCGTCGAATATCCTTTGTTGCCGAATATCCCCTATTCGCGACTCTCTCCATCATCCGTTGTAACTTGTTGTACAGATCTGGTTCAAATCTGTTTCCTCCCTATTTACAGATTCATCTGCCTTTGTGAACAAATCTATGGTTTGACTTGCTCACTGCCCTTTTTATATTGTGTTTGTGCTTGGTGTTTTCTGTGTAGATGGAGAAGAGTGATATCACACGTCCTATTAGCACCATTCTTGATGGCTCAAATTATATCACTTGGGCTCACCAAATGAGAAGTTTTTTATTGGTCGAAAATTATGGCGCATAGTGACTGGCGATATCACCAAGCCTGTCAAACCCATTCATTCAGGGAATGCCACCAGTTCGGACACCACTAAGAATGCTGATGTAGATCTCCCAAATACTACCATTCAGGAGACTACTACCGAAGACGTCAAGTACATTGAAAGACTTGAGGACTGGGATAGCAAAAATCATCAAATCATCAAATCATCACATGGTTGGGTAACACCTCTATTCCGGCTATTCATACACAATTTGATGCTTTTGACACTGCAAAAGAACTTTGGGATTTTCTGTCCACACGCTTTCAATCTATTGGTTTGGCACATTATTATTAATTACATTCTCGCCTTGTTAGTCTAAACCAGGAAGTTGGACAATCTGTGAATGAATACCTTGCCACTCTTCAGCTTATCTGGACTTAGTTAGATCAAGCAAAAATCAGTCTTGACCATATCCGTCTCATCAAAGTACTTATGGGACTCCGTCCAGAGTATGAATCTATTCGGGCTGTCCTTTTACACCGCAACCCTCTACCATCACTTGACGTCGTCGTTCAGGAAATCTTATTTGAGGAGAAAAGACTTGACATTAGCTCCTCTATGCCCTCTAATGCTGCCCTCGCAACCACTCATTCACGACCTACTAATGAGTTCATCTTCTGCAAAAATTGTAAACTCCAAGGACATAAGTTTGCTAATTGTCCTACCATTGAGTGCAGGTACTGTCACAAGCGAGGTCACATCTTGGAAAACTGTCCAACTCGTCCACCTCGCCCTCTTGGTCACTCACATAAACCCATAAATCAGGGTCCTCATCTGCCACCTCATCTGACACTACGCCATCTCCAAGTTTTCAGCTACATGATCTCCATGACTTACTGA

mRNA sequence

ATGAATCAAACCCAAATCAGCCCCATTCATCACCAAAATCAGCCTCCTGATTTAGAATCAAACCCAGTCGTCCCACTCCTGTCGTCCGCCGAAAACCCACCGCCAAATCAAACCCGTCTGCTGAAATATCCTCCGAAAACCCGTCCGCCAAATCAAATACCACCGCCAAATCAAACCCGTCCCTCTCCTCTCGCCCGCTTAATACAGATCCAATCCGTCGAATATCCTTTGTTGCCGAATATCCCCTATTCGCGACTCTCTCCATCATCCGTTGTAACTTGTTGTACAGATCTGATGGAGAAGAGTGATATCACACGTCCTATTAGCACCATTCTTGATGGCTCAAATTATATCACTTGGGCTCACCAAATGAGAAGGAATGCCACCAGTTCGGACACCACTAAGAATGCTGATGTAGATCTCCCAAATACTACCATTCAGGAGACTACTACCGAAGACGTCAAGTACATTGAAAGACTTGAGGACTGGGATAGCAAAAATCATCAAATCATCAAATCATCACATGGTTGGTTAGATCAAGCAAAAATCAGTCTTGACCATATCCGTCTCATCAAAGTACTTATGGGACTCCGTCCAGAGTATGAATCTATTCGGGCTGTCCTTTTACACCGCAACCCTCTACCATCACTTGACGTCGTCGTTCAGGAAATCTTATTTGAGGAGAAAAGACTTGACATTAGCTCCTCTATGCCCTCTAATGCTGCCCTCGCAACCACTCATTCACGACCTACTAATGAGTTCATCTTCTGCAAAAATTGTAAACTCCAAGGACATAAGTTTGCTAATTGTCCTACCATTGAGTGCAGGTACTGTCACAAGCGAGGTCACATCTTGGAAAACTGTCCAACTCGTCCACCTCGCCCTCTTGGTCACTCACATAAACCCATAAATCAGGGTCCTCATCTGCCACCTCATCTGACACTACGCCATCTCCAAGTTTTCAGCTACATGATCTCCATGACTTACTGA

Coding sequence (CDS)

ATGAATCAAACCCAAATCAGCCCCATTCATCACCAAAATCAGCCTCCTGATTTAGAATCAAACCCAGTCGTCCCACTCCTGTCGTCCGCCGAAAACCCACCGCCAAATCAAACCCGTCTGCTGAAATATCCTCCGAAAACCCGTCCGCCAAATCAAATACCACCGCCAAATCAAACCCGTCCCTCTCCTCTCGCCCGCTTAATACAGATCCAATCCGTCGAATATCCTTTGTTGCCGAATATCCCCTATTCGCGACTCTCTCCATCATCCGTTGTAACTTGTTGTACAGATCTGATGGAGAAGAGTGATATCACACGTCCTATTAGCACCATTCTTGATGGCTCAAATTATATCACTTGGGCTCACCAAATGAGAAGGAATGCCACCAGTTCGGACACCACTAAGAATGCTGATGTAGATCTCCCAAATACTACCATTCAGGAGACTACTACCGAAGACGTCAAGTACATTGAAAGACTTGAGGACTGGGATAGCAAAAATCATCAAATCATCAAATCATCACATGGTTGGTTAGATCAAGCAAAAATCAGTCTTGACCATATCCGTCTCATCAAAGTACTTATGGGACTCCGTCCAGAGTATGAATCTATTCGGGCTGTCCTTTTACACCGCAACCCTCTACCATCACTTGACGTCGTCGTTCAGGAAATCTTATTTGAGGAGAAAAGACTTGACATTAGCTCCTCTATGCCCTCTAATGCTGCCCTCGCAACCACTCATTCACGACCTACTAATGAGTTCATCTTCTGCAAAAATTGTAAACTCCAAGGACATAAGTTTGCTAATTGTCCTACCATTGAGTGCAGGTACTGTCACAAGCGAGGTCACATCTTGGAAAACTGTCCAACTCGTCCACCTCGCCCTCTTGGTCACTCACATAAACCCATAAATCAGGGTCCTCATCTGCCACCTCATCTGACACTACGCCATCTCCAAGTTTTCAGCTACATGATCTCCATGACTTACTGA

Protein sequence

MNQTQISPIHHQNQPPDLESNPVVPLLSSAENPPPNQTRLLKYPPKTRPPNQIPPPNQTRPSPLARLIQIQSVEYPLLPNIPYSRLSPSSVVTCCTDLMEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTKNADVDLPNTTIQETTTEDVKYIERLEDWDSKNHQIIKSSHGWLDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKPINQGPHLPPHLTLRHLQVFSYMISMTY

Homology

[Close]

BLAST of PI0026070 vs. ExPASy TrEMBL
Match: A0A5A7VDW0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00430 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 2.1e-74
Identity = 154/240 (64.17%), Postives = 167/240 (69.58%), Query Frame = 0


Query: 99  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVK 158
           MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60

Query: 159 YIERLEDWDSKNHQIIK--------SSHG-----------------------W--LDQAK 218
           YIERLEDWDSKNHQII           H                        W  LDQAK
Sbjct: 61  YIERLEDWDSKNHQIITWLGLAHYYQLHSTLVSLNQEMGQSVNEYLATLQPIWTQLDQAK 120

Query: 219 ISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKRLDISSSMPSNAA 278
           IS DHIRLIKVLMGLRPEYES+RA LLHRNPLPSLD  VQEILFEEKRL I SS+ S+ A
Sbjct: 121 ISPDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVA 180

Query: 279 LATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP 303
           LATTH R  NE IFCKNCKL GHKFANCPTIECRYCHKRGHIL+NCPTRPPRP GHSHKP
Sbjct: 181 LATTHLRQANETIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKP 240

[Close]

BLAST of PI0026070 vs. ExPASy TrEMBL
Match: A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.8e-71
Identity = 153/272 (56.25%), Postives = 167/272 (61.40%), Query Frame = 0


Query: 99  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVK 158
           MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60

Query: 159 YIERLEDWDSKNHQII-------------------KSSHGW------------------- 218
           YIERLEDWDSKNHQII                    +   W                   
Sbjct: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120

Query: 219 ---------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLH 278
                                      LDQAKIS DHIRLIKVLMGLRPEYES+RA LLH
Sbjct: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180

Query: 279 RNPLPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANC 303
           RNPLPSLD  VQEILFEEKRL I SS+ S+ ALATTH R  NE IFCKNCKL GHKFANC
Sbjct: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240

[Close]

BLAST of PI0026070 vs. ExPASy TrEMBL
Match: A0A1S3BBA1 (uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.4e-70
Identity = 152/272 (55.88%), Postives = 167/272 (61.40%), Query Frame = 0


Query: 99  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVK 158
           MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60

Query: 159 YIERLEDWDSKNHQII-------------------KSSHGW------------------- 218
           YIERLEDWDSKNHQII                    +   W                   
Sbjct: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120

Query: 219 ---------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLH 278
                                      L+QAKIS DHIRLIKVLMGLRPEYES+RA LLH
Sbjct: 121 STLVSLNQEVGQSVNEYLATLQPIWTQLEQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180

Query: 279 RNPLPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANC 303
           RNPLPSLD  VQEILFEEKRL I SS+ S+ ALATTH R  NE IFCKNCKL GHKFANC
Sbjct: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240

[Close]

BLAST of PI0026070 vs. ExPASy TrEMBL
Match: A0A5A7SZ66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00840 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.8e-70
Identity = 152/272 (55.88%), Postives = 166/272 (61.03%), Query Frame = 0


Query: 99  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVK 158
           MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60

Query: 159 YIERLEDWDSKNHQII-------------------KSSHGW------------------- 218
           YIERLEDWDSKNHQII                    +   W                   
Sbjct: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120

Query: 219 ---------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLH 278
                                      LDQAKIS DHIRLIKVLMGLRPEYE +RA LLH
Sbjct: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYEPVRAALLH 180

Query: 279 RNPLPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANC 303
           RNPLPSLD  VQEILFEEKRL I SS+ S+ ALATTH R  NE IFCKNCKL GHKFANC
Sbjct: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240

[Close]

BLAST of PI0026070 vs. ExPASy TrEMBL
Match: A0A5A7TPN5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00220 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 6.9e-70
Identity = 155/271 (57.20%), Postives = 164/271 (60.52%), Query Frame = 0


Query: 99  MEKSDITRPISTILDGSNYITWAHQMR---------RNATS------------SDTTKNA 158
           MEK DI RPISTILDGSNYITWA+QMR         R  T              +T+KN 
Sbjct: 1   MEKGDIARPISTILDGSNYITWANQMRSFLIGRKLWRIVTGDITKPIKPTPPVKNTSKNN 60

Query: 159 DVDLPNTTIQETTTEDVKYIERLEDWDSKNHQIIKSSHGW-------------------- 218
                  T  ETT ED KYIERLEDWDSKNHQII     W                    
Sbjct: 61  TEHNDANTSDETTAEDTKYIERLEDWDSKNHQIITWLELWDFLYPRFQSIGLAHYYQLHS 120

Query: 219 --------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLHR 278
                                     LDQAKIS DHIRLIKVLMGLRPEYES+RA LLHR
Sbjct: 121 TLVNLNQEVGQSVNKYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLHR 180

Query: 279 NPLPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANCP 303
           N LPSLD  VQEILFE+KRL + SS+P + ALATTH R  NE  FCKNCKL  HKFANCP
Sbjct: 181 NHLPSLDAAVQEILFEKKRLGLVSSLPFDVALATTHLRLANETSFCKNCKLHDHKFANCP 240

[Close]

BLAST of PI0026070 vs. NCBI nr
Match: KAA0065380.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 289.3 bits (739), Expect = 4.3e-74
Identity = 154/240 (64.17%), Postives = 167/240 (69.58%), Query Frame = 0


Query: 99  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVK 158
           MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60

Query: 159 YIERLEDWDSKNHQIIK--------SSHG-----------------------W--LDQAK 218
           YIERLEDWDSKNHQII           H                        W  LDQAK
Sbjct: 61  YIERLEDWDSKNHQIITWLGLAHYYQLHSTLVSLNQEMGQSVNEYLATLQPIWTQLDQAK 120

Query: 219 ISLDHIRLIKVLMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKRLDISSSMPSNAA 278
           IS DHIRLIKVLMGLRPEYES+RA LLHRNPLPSLD  VQEILFEEKRL I SS+ S+ A
Sbjct: 121 ISPDHIRLIKVLMGLRPEYESVRAALLHRNPLPSLDAAVQEILFEEKRLGIVSSLHSDVA 180

Query: 279 LATTHSRPTNEFIFCKNCKLQGHKFANCPTIECRYCHKRGHILENCPTRPPRPLGHSHKP 303
           LATTH R  NE IFCKNCKL GHKFANCPTIECRYCHKRGHIL+NCPTRPPRP GHSHKP
Sbjct: 181 LATTHLRQANETIFCKNCKLHGHKFANCPTIECRYCHKRGHILDNCPTRPPRPPGHSHKP 240

[Close]

BLAST of PI0026070 vs. NCBI nr
Match: KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 278.1 bits (710), Expect = 9.8e-71
Identity = 153/272 (56.25%), Postives = 167/272 (61.40%), Query Frame = 0


Query: 99  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVK 158
           MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60

Query: 159 YIERLEDWDSKNHQII-------------------KSSHGW------------------- 218
           YIERLEDWDSKNHQII                    +   W                   
Sbjct: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120

Query: 219 ---------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLH 278
                                      LDQAKIS DHIRLIKVLMGLRPEYES+RA LLH
Sbjct: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180

Query: 279 RNPLPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANC 303
           RNPLPSLD  VQEILFEEKRL I SS+ S+ ALATTH R  NE IFCKNCKL GHKFANC
Sbjct: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240

[Close]

BLAST of PI0026070 vs. NCBI nr
Match: XP_031739694.1 (uncharacterized protein LOC105434738 [Cucumis sativus])

HSP 1 Score: 276.9 bits (707), Expect = 2.2e-70
Identity = 155/298 (52.01%), Postives = 173/298 (58.05%), Query Frame = 0


Query: 99  MEKSDITRPISTILDGSNYITWAHQMR--------------------RNATSSDTTKNAD 158
           MEK ++ RPISTILDG+NYITWAHQMR                    +     DTT+N D
Sbjct: 1   MEKHEVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPTPLMDTTENID 60

Query: 159 VDLPNTTIQETTTEDVKYIERLEDWDSKNHQII-------------------KSSHGW-- 218
            D  + T+QETT E  KYIERLEDWDSKNHQII                    +   W  
Sbjct: 61  TDPSDVTVQETTAETDKYIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDTAKELWDF 120

Query: 219 --------------------------------------------LDQAKISLDHIRLIKV 278
                                                       LDQAKI+ +HIRLIKV
Sbjct: 121 LSTRFQSIGLAHYYQLHSRLVSLNQEGGQSVNEYLATLQPIWTQLDQAKINPEHIRLIKV 180

Query: 279 LMGLRPEYESIRAVLLHRNPLPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNE 312
           LMGLRPEYES+RA LLHRNPLPSLD  +QEILFEE RL I SS+PS+ ALATTHSR  NE
Sbjct: 181 LMGLRPEYESVRAALLHRNPLPSLDAAIQEILFEENRLGIVSSLPSDVALATTHSRSANE 240

[Close]

BLAST of PI0026070 vs. NCBI nr
Match: XP_008445037.1 (PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo])

HSP 1 Score: 276.6 bits (706), Expect = 2.9e-70
Identity = 152/272 (55.88%), Postives = 167/272 (61.40%), Query Frame = 0


Query: 99  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVK 158
           MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60

Query: 159 YIERLEDWDSKNHQII-------------------KSSHGW------------------- 218
           YIERLEDWDSKNHQII                    +   W                   
Sbjct: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120

Query: 219 ---------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLH 278
                                      L+QAKIS DHIRLIKVLMGLRPEYES+RA LLH
Sbjct: 121 STLVSLNQEVGQSVNEYLATLQPIWTQLEQAKISPDHIRLIKVLMGLRPEYESVRAALLH 180

Query: 279 RNPLPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANC 303
           RNPLPSLD  VQEILFEEKRL I SS+ S+ ALATTH R  NE IFCKNCKL GHKFANC
Sbjct: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240

[Close]

BLAST of PI0026070 vs. NCBI nr
Match: KAA0036574.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 276.2 bits (705), Expect = 3.7e-70
Identity = 152/272 (55.88%), Postives = 166/272 (61.03%), Query Frame = 0


Query: 99  MEKSDITRPISTILDGSNYITWAHQMRRNATSSDTTK--NADVDLP-NTTIQETTTEDVK 158
           MEK+D+ RPISTILDG+NYITWAHQMR         +    D+  P    + ET+ ED++
Sbjct: 1   MEKNDVARPISTILDGTNYITWAHQMRSFLIGRKLWRIVTGDITKPVKPIVHETSAEDIQ 60

Query: 159 YIERLEDWDSKNHQII-------------------KSSHGW------------------- 218
           YIERLEDWDSKNHQII                    +   W                   
Sbjct: 61  YIERLEDWDSKNHQIITWLGNTSIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLH 120

Query: 219 ---------------------------LDQAKISLDHIRLIKVLMGLRPEYESIRAVLLH 278
                                      LDQAKIS DHIRLIKVLMGLRPEYE +RA LLH
Sbjct: 121 STLVSLNQEMGQSVNEYLATLQPIWTQLDQAKISPDHIRLIKVLMGLRPEYEPVRAALLH 180

Query: 279 RNPLPSLDVVVQEILFEEKRLDISSSMPSNAALATTHSRPTNEFIFCKNCKLQGHKFANC 303
           RNPLPSLD  VQEILFEEKRL I SS+ S+ ALATTH R  NE IFCKNCKL GHKFANC
Sbjct: 181 RNPLPSLDAAVQEILFEEKRLGIVSSLHSDVALATTHLRQANETIFCKNCKLHGHKFANC 240

The following BLAST results are available for this feature:

BLAST of PI0026070 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDW0	2.1e-74	64.17	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DG18	4.8e-71	56.25	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A1S3BBA1	1.4e-70	55.88	uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=...	[more]
A0A5A7SZ66	1.8e-70	55.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TPN5	6.9e-70	57.20	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of PI0026070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065380.1	4.3e-74	64.17	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0043149.1	9.8e-71	56.25	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_031739694.1	2.2e-70	52.01	uncharacterized protein LOC105434738 [Cucumis sativus]	[more]
XP_008445037.1	2.9e-70	55.88	PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]	[more]
KAA0036574.1	3.7e-70	55.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of PI0026070 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 274..290 e-value: 0.033 score: 20.3 coord: 256..272 e-value: 0.5 score: 13.1
None	No IPR available	GENE3D	4.10.60.10		coord: 234..294 e-value: 1.6E-7 score: 33.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	PANTHER	PTHR34222:SF36	SUBFAMILY NOT NAMED	coord: 194..288
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 194..288
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 248..292

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0026070.1	PI0026070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding