PI0025916 (gene) Melon (PI 482460) v1

Overview
NamePI0025916
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr07: 19343544 .. 19344698 (+)
RNA-Seq ExpressionPI0025916
SyntenyPI0025916
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCTCTCAACAAATTTCTCTCTTGATATCATAGCAGACAATGACCAATGCCTTCCCCACTCTATCTTCATCCTTGATCACAAATTTCAGCCACCCACCCCTAAATATTGAACCAATTACCATCTACCAAACTTGGTAGAAGCCACTATCTATTATGGAAGATCTTAGCCCTCCCCATCTTAAAGAGCTACAAGACATTGGCAGGAGAAAATATCTTAAAGAGCTACATGACATTTGACAGGAGAAACACCATGTCCTAAAAAATTCATCCAAGCTGCAATTGGAGAACCATCTGTGTTCGAAGCCACCGTTGGAACTGCGGTTGAAGCGGCAGAAACAGCCGTTGGGACTTCCTCAAGCTCGACATCAACAAAAATTATCAATCCAAAATTTGAACAATGGGTATCTTCTTCTCCTTGGTTGGATGTACAATTCCATGGAACCTGAAGTTGTTCTTCAACTAATGGGATTCAATACTGCAAAAGATCTCTGGGAGGCTATCAAAAACTGCATTCAATCAAGGGCAGAAGAAGATTTCCACCGTCACACCTTCCAAACCACTCGGAAAGGTAATTGTAAGATGGAAGATTATTTGAGAATCATGAAAACTAATGCGGATAATCTTGGCCAAGCTGGGAGCCCTGTTCCTCTTCATTCTTTAATTTCTCAGGCTCTATTGGGACTTGATGAAGTATACAATTCAGTCACCCTTGTAATCTAAGGAAAACTTGATTTCTCCTAGTTAGATATGCAATCCGAAATTTTGATTTTTGAAAAACGACTTGAACATCAGAATTCTAAAAAAAATCCAAGTAATGTTGTTTCCAATGCTGCTGTGAATATGGTTCAAAATAGAGGAGGTGACACTCGACAAAACAATAACTCCCATCAGTTTAGTGGTCGCGGACGTGGCCGAGGAAGAGGAAACAAACCCACTTATTAGCTATGTGGAAAATATGGACACTCTGCCTTGGTTTGTTATAACAACTTTAATAAGGAATATGCTGGAAATGCAAATCAAAACAGGGAAACAGTCCCAATCCAATTGTAAATTCAAACCCTGCCTTTATGACTACTCAAAATTCTAATCCCTTTGCCACAGTAGTTGACACTAACTGGTATGTTGACAGTGACGCAACTAATCAGGTAAACTTT

mRNA sequence

ATTCTCTCAACAAATTTCTCTCTTGATATCATAGCAGACAATGACCAATGCCTTCCCCACTCTATCTTCATCCTTGATCACAAATTTCAGCCACCCACCCCTAAATATTGAACCAATTACCATCTACCAAACTTGGTAGAAGCCACTATCTATTATGGAAGATCTTAGCCCTCCCCATCTTAAAGAGCTACAAGACATTGGCAGGAGAAAATATCTTAAAGAGCTACATGACATTTGACAGGAGAAACACCATGTCCTAAAAAATTCATCCAAGCTGCAATTGGAGAACCATCTGTGTTCGAAGCCACCGTTGGAACTGCGGTTGAAGCGGCAGAAACAGCCGTTGGGACTTCCTCAAGCTCGACATCAACAAAAATTATCAATCCAAAATTTGAACAATGGGTATCTTCTTCTCCTTGGTTGGATGTACAATTCCATGGAACCTGAAGTTGTTCTTCAACTAATGGGATTCAATACTGCAAAAGATCTCTGGGAGGCTATCAAAAACTGCATTCAATCAAGGGCAGAAGAAGATTTCCACCGTCACACCTTCCAAACCACTCGGAAAGGTAATTGTAAGATGGAAGATTATTTGAGAATCATGAAAACTAATGCGGATAATCTTGGCCAAGCTGGGAGCCCTGTTCCTCTTCATTCTTTAATTTCTCAGGCTCTATTGGGACTTGATGAAGTATACAATTCAGTCACCCTTGTAATCTAAGGAAAACTTGATTTCTCCTAGTTAGATATGCAATCCGAAATTTTGATTTTTGAAAAACGACTTGAACATCAGAATTCTAAAAAAAATCCAAGTAATGTTGTTTCCAATGCTGCTGTGAATATGGTTCAAAATAGAGGAGGTGACACTCGACAAAACAATAACTCCCATCAGTTTAGTGGTCGCGGACGTGGCCGAGGAAGAGGAAACAAACCCACTTATTAGCTATGTGGAAAATATGGACACTCTGCCTTGGTTTGTTATAACAACTTTAATAAGGAATATGCTGGAAATGCAAATCAAAACAGGGAAACAGTCCCAATCCAATTGTAAATTCAAACCCTGCCTTTATGACTACTCAAAATTCTAATCCCTTTGCCACAGTAGTTGACACTAACTGGTATGTTGACAGTGACGCAACTAATCAGGTAAACTTT

Coding sequence (CDS)

ATGTACAATTCCATGGAACCTGAAGTTGTTCTTCAACTAATGGGATTCAATACTGCAAAAGATCTCTGGGAGGCTATCAAAAACTGCATTCAATCAAGGGCAGAAGAAGATTTCCACCGTCACACCTTCCAAACCACTCGGAAAGGTAATTGTAAGATGGAAGATTATTTGAGAATCATGAAAACTAATGCGGATAATCTTGGCCAAGCTGGGAGCCCTGTTCCTCTTCATTCTTTAATTTCTCAGGCTCTATTGGGACTTGATGAAGTATACAATTCAGTCACCCTTGTAATCTAA

Protein sequence

MYNSMEPEVVLQLMGFNTAKDLWEAIKNCIQSRAEEDFHRHTFQTTRKGNCKMEDYLRIMKTNADNLGQAGSPVPLHSLISQALLGLDEVYNSVTLVI
Homology
[Close]
BLAST of PI0025916 vs. ExPASy TrEMBL
Match: A0A5D3E3L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001590 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.3e-34
Identity = 80/100 (80.00%), Postives = 85/100 (85.00%), Query Frame = 0 

Query: 1   MYNSMEPEVVLQLMGFNTAKDLWEAIKNC--IQSRAEEDFHRHTFQTTRKGNCKMEDYLR 60
           +YNSM P+V LQLMGFNTAKDLWEAI+N   I+SRAEE F RHTFQTTR+GN KMEDYLR
Sbjct: 83  IYNSMVPDVALQLMGFNTAKDLWEAIQNLFGIKSRAEEYFLRHTFQTTREGNYKMEDYLR 142

Query: 61  IMKTNADNLGQAGSPVPLHSLISQALLGLDEVYNSVTLVI 99
           IMK NADNLGQAGSPVP   LISQ LLGLDEVYN VT VI
Sbjct: 143 IMKINADNLGQAGSPVPHRYLISQVLLGLDEVYNPVTAVI 182

[Close]
BLAST of PI0025916 vs. ExPASy TrEMBL
Match: A0A5A7UY76 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00940 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.7e-32
Identity = 75/94 (79.79%), Postives = 81/94 (86.17%), Query Frame = 0 

Query: 1   MYNSMEPEVVLQLMGFNTAKDLWEAIKNC--IQSRAEEDFHRHTFQTTRKGNCKMEDYLR 60
           +YNSM  EV  QLMGFNTAKDL EAI++   +QSR EEDF RHTFQTTRKGN KMEDYLR
Sbjct: 72  IYNSMTAEVAFQLMGFNTAKDLEEAIQDLFGVQSRGEEDFLRHTFQTTRKGNSKMEDYLR 131

Query: 61  IMKTNADNLGQAGSPVPLHSLISQALLGLDEVYN 93
           IMKTNA+NLGQAGSP+PL SLISQ LLGLDEVYN
Sbjct: 132 IMKTNAENLGQAGSPIPLRSLISQVLLGLDEVYN 165

[Close]
BLAST of PI0025916 vs. ExPASy TrEMBL
Match: A0A0A0K3F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G091720 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 74/96 (77.08%), Postives = 80/96 (83.33%), Query Frame = 0 

Query: 5  MEPEVVLQLMGFNTAKDLWEAIKNC--IQSRAEEDFHRHTFQTTRKGNCKMEDYLRIMKT 64
          M PEV LQLMGFNTAKDLWEAI++   +Q RAEEDF RHTFQTT+KGN KMEDYL  MKT
Sbjct: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60

Query: 65 NADNLGQAGSPVPLHSLISQALLGLDEVYNSVTLVI 99
          N DNL QAGS VPLHSLISQ +LGLDE+YN VT VI
Sbjct: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 96

[Close]
BLAST of PI0025916 vs. ExPASy TrEMBL
Match: A0A0A0LXB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.1e-30
Identity = 71/100 (71.00%), Postives = 82/100 (82.00%), Query Frame = 0 

Query: 1   MYNSMEPEVVLQLMGFNTAKDLWEAIKNC--IQSRAEEDFHRHTFQTTRKGNCKMEDYLR 60
           +YNS+ PEVV+QL+GF  AKD+WEA  +   ++SRAEEDF R TFQTTRKGN  MEDYLR
Sbjct: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81

Query: 61  IMKTNADNLGQAGSPVPLHSLISQALLGLDEVYNSVTLVI 99
           IMKTNADNLGQA SP+P  +LISQ LLGLDEVYN V +VI
Sbjct: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVI 121

[Close]
BLAST of PI0025916 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.3e-28
Identity = 66/100 (66.00%), Postives = 78/100 (78.00%), Query Frame = 0 

Query: 1   MYNSMEPEVVLQLMGFNTAKDLWEAIKNC--IQSRAEEDFHRHTFQTTRKGNCKMEDYLR 60
           +YNSM P+V +QLMGF   +DLW+A ++   +QSRAEEDF R   QTTRKGN KME+YL 
Sbjct: 119 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLL 178

Query: 61  IMKTNADNLGQAGSPVPLHSLISQALLGLDEVYNSVTLVI 99
           +MKTN DNLGQ GSPVP  +LISQ LLGLDEVYN V +VI
Sbjct: 179 VMKTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVI 218

[Close]
BLAST of PI0025916 vs. NCBI nr
Match: KAA0057475.1 (uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK30171.1 uncharacterized protein E5676_scaffold216G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-33
Identity = 80/100 (80.00%), Postives = 85/100 (85.00%), Query Frame = 0 

Query: 1   MYNSMEPEVVLQLMGFNTAKDLWEAIKNC--IQSRAEEDFHRHTFQTTRKGNCKMEDYLR 60
           +YNSM P+V LQLMGFNTAKDLWEAI+N   I+SRAEE F RHTFQTTR+GN KMEDYLR
Sbjct: 83  IYNSMVPDVALQLMGFNTAKDLWEAIQNLFGIKSRAEEYFLRHTFQTTREGNYKMEDYLR 142

Query: 61  IMKTNADNLGQAGSPVPLHSLISQALLGLDEVYNSVTLVI 99
           IMK NADNLGQAGSPVP   LISQ LLGLDEVYN VT VI
Sbjct: 143 IMKINADNLGQAGSPVPHRYLISQVLLGLDEVYNPVTAVI 182

[Close]
BLAST of PI0025916 vs. NCBI nr
Match: KAA0060208.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ95582.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 3.5e-32
Identity = 75/94 (79.79%), Postives = 81/94 (86.17%), Query Frame = 0 

Query: 1   MYNSMEPEVVLQLMGFNTAKDLWEAIKNC--IQSRAEEDFHRHTFQTTRKGNCKMEDYLR 60
           +YNSM  EV  QLMGFNTAKDL EAI++   +QSR EEDF RHTFQTTRKGN KMEDYLR
Sbjct: 72  IYNSMTAEVAFQLMGFNTAKDLEEAIQDLFGVQSRGEEDFLRHTFQTTRKGNSKMEDYLR 131

Query: 61  IMKTNADNLGQAGSPVPLHSLISQALLGLDEVYN 93
           IMKTNA+NLGQAGSP+PL SLISQ LLGLDEVYN
Sbjct: 132 IMKTNAENLGQAGSPIPLRSLISQVLLGLDEVYN 165

[Close]
BLAST of PI0025916 vs. NCBI nr
Match: KGN44003.1 (hypothetical protein Csa_016232 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 2.3e-31
Identity = 74/96 (77.08%), Postives = 80/96 (83.33%), Query Frame = 0 

Query: 5  MEPEVVLQLMGFNTAKDLWEAIKNC--IQSRAEEDFHRHTFQTTRKGNCKMEDYLRIMKT 64
          M PEV LQLMGFNTAKDLWEAI++   +Q RAEEDF RHTFQTT+KGN KMEDYL  MKT
Sbjct: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60

Query: 65 NADNLGQAGSPVPLHSLISQALLGLDEVYNSVTLVI 99
          N DNL QAGS VPLHSLISQ +LGLDE+YN VT VI
Sbjct: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 96

[Close]
BLAST of PI0025916 vs. NCBI nr
Match: KGN65684.1 (hypothetical protein Csa_019689 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 4.3e-30
Identity = 71/100 (71.00%), Postives = 82/100 (82.00%), Query Frame = 0 

Query: 1   MYNSMEPEVVLQLMGFNTAKDLWEAIKNC--IQSRAEEDFHRHTFQTTRKGNCKMEDYLR 60
           +YNS+ PEVV+QL+GF  AKD+WEA  +   ++SRAEEDF R TFQTTRKGN  MEDYLR
Sbjct: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81

Query: 61  IMKTNADNLGQAGSPVPLHSLISQALLGLDEVYNSVTLVI 99
           IMKTNADNLGQA SP+P  +LISQ LLGLDEVYN V +VI
Sbjct: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVI 121

[Close]
BLAST of PI0025916 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 8.9e-28
Identity = 66/100 (66.00%), Postives = 78/100 (78.00%), Query Frame = 0 

Query: 1   MYNSMEPEVVLQLMGFNTAKDLWEAIKNC--IQSRAEEDFHRHTFQTTRKGNCKMEDYLR 60
           +YNSM P+V +QLMGF   +DLW+A ++   +QSRAEEDF R   QTTRKGN KME+YL 
Sbjct: 119 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLL 178

Query: 61  IMKTNADNLGQAGSPVPLHSLISQALLGLDEVYNSVTLVI 99
           +MKTN DNLGQ GSPVP  +LISQ LLGLDEVYN V +VI
Sbjct: 179 VMKTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVI 218

The following BLAST results are available for this feature:
BLAST of PI0025916 vs.
Match NameE-valueIdentityDescription
BLAST of PI0025916 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E3L75.3e-3480.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UY761.7e-3279.79Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0K3F91.1e-3177.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G091720 PE=4 SV=1[more]
A0A0A0LXB72.1e-3071.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1[more]
A0A5A7SIT74.3e-2866.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of PI0025916 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0057475.11.1e-3380.00uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK... [more]
KAA0060208.13.5e-3279.79Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ95582.1 Integrase, cata... [more]
KGN44003.12.3e-3177.08hypothetical protein Csa_016232 [Cucumis sativus][more]
KGN65684.14.3e-3071.00hypothetical protein Csa_019689 [Cucumis sativus][more]
KAA0026100.18.9e-2866.00uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa][more]
BLAST of PI0025916 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0025916.1PI0025916.1mRNA