PI0025822 (gene) Melon (PI 482460) v1

Overview


Name	PI0025822
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr06: 10168286 .. 10168450 (-)
RNA-Seq Expression	PI0025822
Synteny	PI0025822

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAACAATGAAGTAGCAGACGACGTTGATGAGGGTGACTCTACATACGCCACCACTAGCGGTGAAGAAATTCACTACATAGAGACGTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGTCGAAAAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAA

mRNA sequence

ATGACGAACAATGAAGTAGCAGACGACGTTGATGAGGGTGACTCTACATACGCCACCACTAGCGGTGAAGAAATTCACTACATAGAGACGTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGTCGAAAAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAA

Coding sequence (CDS)

ATGACGAACAATGAAGTAGCAGACGACGTTGATGAGGGTGACTCTACATACGCCACCACTAGCGGTGAAGAAATTCACTACATAGAGACGTCGAGTGCATGGAGTCAATGGAGGGACGAGCTTGTCGAAAAAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAA

Protein sequence

MTNNEVADDVDEGDSTYATTSGEEIHYIETSSAWSQWRDELVEKMFSDWELRNQ

Homology

[Close]

BLAST of PI0025822 vs. ExPASy TrEMBL
Match: A0A5D3CA52 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00290 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.7e-14
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEEIHYIETSSAWSQWRDELVEKMFSDWELRNQ 55
           MTN  + DD+DE DST+ATT G++IHYIETS+ W+ WRDELVE+MFSDWELRNQ
Sbjct: 74  MTNFNIEDDIDEVDSTHATTVGDDIHYIETSNEWTPWRDELVEEMFSDWELRNQ 127

[Close]

BLAST of PI0025822 vs. ExPASy TrEMBL
Match: A0A1S3B5B3 (uncharacterized protein LOC103486178 OS=Cucumis melo OX=3656 GN=LOC103486178 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.7e-14
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEEIHYIETSSAWSQWRDELVEKMFSDWELRNQ 55
           MTN  + DD+DE DST+ATT G++IHYIETS+ W+ WRDELVE+MFSDWELRNQ
Sbjct: 105 MTNFNIEDDIDEVDSTHATTVGDDIHYIETSNEWTPWRDELVEEMFSDWELRNQ 158

[Close]

BLAST of PI0025822 vs. ExPASy TrEMBL
Match: A0A5D3CE09 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00590 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEEIHYIETSSAWSQWRDELVEKMFSDWELRNQ 55
           MTN ++ D++DE DST+ATT+ ++IHYIETS+ WSQWRD+LVE+MFSDWELRNQ
Sbjct: 205 MTNFDIEDNIDEVDSTHATTTVDDIHYIETSNEWSQWRDDLVEEMFSDWELRNQ 258

[Close]

BLAST of PI0025822 vs. ExPASy TrEMBL
Match: A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 37/54 (68.52%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEEIHYIETSSAWSQWRDELVEKMFSDWELRNQ 55
           MTN ++ D++DE DST+ATT+ ++IHYIETS+ WSQWRD+L E+MFSDWELRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

[Close]

BLAST of PI0025822 vs. ExPASy TrEMBL
Match: A0A5A7VJX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001490 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 37/54 (68.52%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEEIHYIETSSAWSQWRDELVEKMFSDWELRNQ 55
           MTN ++ D++DE DST+ATT+ ++IHYIETS+ WSQWRD+L E+MFSDWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0025822 vs. NCBI nr
Match: KAA0060101.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK08415.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEEIHYIETSSAWSQWRDELVEKMFSDWELRNQ 55
           MTN  + DD+DE DST+ATT G++IHYIETS+ W+ WRDELVE+MFSDWELRNQ
Sbjct: 74  MTNFNIEDDIDEVDSTHATTVGDDIHYIETSNEWTPWRDELVEEMFSDWELRNQ 127

[Close]

BLAST of PI0025822 vs. NCBI nr
Match: XP_008442271.1 (PREDICTED: uncharacterized protein LOC103486178 [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEEIHYIETSSAWSQWRDELVEKMFSDWELRNQ 55
           MTN  + DD+DE DST+ATT G++IHYIETS+ W+ WRDELVE+MFSDWELRNQ
Sbjct: 105 MTNFNIEDDIDEVDSTHATTVGDDIHYIETSNEWTPWRDELVEEMFSDWELRNQ 158

[Close]

BLAST of PI0025822 vs. NCBI nr
Match: TYK09570.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 2.6e-13
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEEIHYIETSSAWSQWRDELVEKMFSDWELRNQ 55
           MTN ++ D++DE DST+ATT+ ++IHYIETS+ WSQWRD+LVE+MFSDWELRNQ
Sbjct: 205 MTNFDIEDNIDEVDSTHATTTVDDIHYIETSNEWSQWRDDLVEEMFSDWELRNQ 258

[Close]

BLAST of PI0025822 vs. NCBI nr
Match: KAA0067470.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 3.4e-13
Identity = 37/54 (68.52%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEEIHYIETSSAWSQWRDELVEKMFSDWELRNQ 55
           MTN ++ D++DE DST+ATT+ ++IHYIETS+ WSQWRD+L E+MFSDWELRNQ
Sbjct: 254 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 307

[Close]

BLAST of PI0025822 vs. NCBI nr
Match: TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 3.4e-13
Identity = 37/54 (68.52%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MTNNEVADDVDEGDSTYATTSGEEIHYIETSSAWSQWRDELVEKMFSDWELRNQ 55
           MTN ++ D++DE DST+ATT+ ++IHYIETS+ WSQWRD+L E+MFSDWELRNQ
Sbjct: 161 MTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ 214

The following BLAST results are available for this feature:

BLAST of PI0025822 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025822 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CA52	5.7e-14	72.22	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3B5B3	5.7e-14	72.22	uncharacterized protein LOC103486178 OS=Cucumis melo OX=3656 GN=LOC103486178 PE=...	[more]
A0A5D3CE09	1.3e-13	70.37	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BL48	1.7e-13	68.52	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7VJX3	1.7e-13	68.52	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0025822 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060101.1	1.2e-13	72.22	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK08415.1 putative nucleas...	[more]
XP_008442271.1	1.2e-13	72.22	PREDICTED: uncharacterized protein LOC103486178 [Cucumis melo]	[more]
TYK09570.1	2.6e-13	70.37	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0067470.1	3.4e-13	68.52	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ99699.1	3.4e-13	68.52	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of PI0025822 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025822.1	PI0025822.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding