PI0025738 (gene) Melon (PI 482460) v1

Overview


Name	PI0025738
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Location	chr03: 14316245 .. 14316784 (+)
RNA-Seq Expression	PI0025738
Synteny	PI0025738

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACACTTCTTTTGAATATATCCCAAGGCTTAAGCCAGAAATAACAAAGGTTCTTTCAGGAATTGCAAAGATCCAAGCAGACAACTTGACTCCTCTTGAAAAATATTTGAATAGTTACCTTAAGAGGGTAGACAACTTCAATGATGTACAATCTTCATATTCCGCACAACTATTGTTGACAGATAAAACTCATCAATTGGACGAGAAGACATCTACCATCAAAGAAGCCTTGACTTTGATGGACCAACTACAGGAAGATGCCAAAGTTATTCAGGAGAGGGTTACACAGTTATCCTTGGAAAAGAAAGAACTGGAGAGCAAACTTCAGAGTATAAATACTGAGTCTGAACAGCTATCCATCTTATCTTGTGAGAAAAATGAGGCCATAAATAGGAAGGAATTGGAGATTGCTAAGCTCCAAGACAAAGCTAATGCTCTTGAAAGCACCCTTGCTATTACCGAAGAAGCCACTGAGGCCTTGGCTACGATTCGTAAGAGTATGGAGGCCGCACGCGAAGAATTCAGGAACTTCAAGTAG

mRNA sequence

ATGCACACTTCTTTTGAATATATCCCAAGGCTTAAGCCAGAAATAACAAAGGTTCTTTCAGGAATTGCAAAGATCCAAGCAGACAACTTGACTCCTCTTGAAAAATATTTGAATAGTTACCTTAAGAGGGTAGACAACTTCAATGATGTACAATCTTCATATTCCGCACAACTATTGTTGACAGATAAAACTCATCAATTGGACGAGAAGACATCTACCATCAAAGAAGCCTTGACTTTGATGGACCAACTACAGGAAGATGCCAAAGTTATTCAGGAGAGGGTTACACAGTTATCCTTGGAAAAGAAAGAACTGGAGAGCAAACTTCAGAGTATAAATACTGAGTCTGAACAGCTATCCATCTTATCTTGTGAGAAAAATGAGGCCATAAATAGGAAGGAATTGGAGATTGCTAAGCTCCAAGACAAAGCTAATGCTCTTGAAAGCACCCTTGCTATTACCGAAGAAGCCACTGAGGCCTTGGCTACGATTCGTAAGAGTATGGAGGCCGCACGCGAAGAATTCAGGAACTTCAAGTAG

Coding sequence (CDS)

ATGCACACTTCTTTTGAATATATCCCAAGGCTTAAGCCAGAAATAACAAAGGTTCTTTCAGGAATTGCAAAGATCCAAGCAGACAACTTGACTCCTCTTGAAAAATATTTGAATAGTTACCTTAAGAGGGTAGACAACTTCAATGATGTACAATCTTCATATTCCGCACAACTATTGTTGACAGATAAAACTCATCAATTGGACGAGAAGACATCTACCATCAAAGAAGCCTTGACTTTGATGGACCAACTACAGGAAGATGCCAAAGTTATTCAGGAGAGGGTTACACAGTTATCCTTGGAAAAGAAAGAACTGGAGAGCAAACTTCAGAGTATAAATACTGAGTCTGAACAGCTATCCATCTTATCTTGTGAGAAAAATGAGGCCATAAATAGGAAGGAATTGGAGATTGCTAAGCTCCAAGACAAAGCTAATGCTCTTGAAAGCACCCTTGCTATTACCGAAGAAGCCACTGAGGCCTTGGCTACGATTCGTAAGAGTATGGAGGCCGCACGCGAAGAATTCAGGAACTTCAAGTAG

Protein sequence

MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLLTDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSLEKKELESKLQSINTESEQLSILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK

Homology

[Close]

BLAST of PI0025738 vs. ExPASy TrEMBL
Match: A0A5D3BW91 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001500 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 5.8e-63
Identity = 140/179 (78.21%), Postives = 155/179 (86.59%), Query Frame = 0


Query: 1   MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLL 60
           M TSFEYIPRL+PEI  VLSGI KI AD LT LE+YLNSYLKRVDNFNDVQSSYSAQLL 
Sbjct: 331 MRTSFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLS 390

Query: 61  TDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSLEKKELESKLQSINTESEQLS 120
           TDK  QL+EKTS IKEALTL+ QL+ DAKVIQER  +LSLE+KELE +LQSIN ESEQLS
Sbjct: 391 TDKARQLNEKTSAIKEALTLVKQLRGDAKVIQERTAELSLERKELEKRLQSINAESEQLS 450

Query: 121 ILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK 180
           ILSCEK EAI+++ELE+AKLQD+ N LEST AI EEA EALATIR+SMEA REEF+NFK
Sbjct: 451 ILSCEKAEAIDQQELEVAKLQDEVNTLESTPAIIEEAIEALATIRQSMEATREEFKNFK 509

[Close]

BLAST of PI0025738 vs. ExPASy TrEMBL
Match: A0A5A7V2J6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold348G00060 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.3e-62
Identity = 139/179 (77.65%), Postives = 154/179 (86.03%), Query Frame = 0


Query: 1   MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLL 60
           M TSFEYIPRL+PEI  VLSGI KI AD LT LE+YLNSYLKRVDNFNDVQSSYSAQLL 
Sbjct: 331 MRTSFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLS 390

Query: 61  TDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSLEKKELESKLQSINTESEQLS 120
           TDK  QL+EKTS IKEALTL+ QL+ DAKVIQER  +LSLE+KELE +LQSIN ESEQLS
Sbjct: 391 TDKARQLNEKTSAIKEALTLVKQLRGDAKVIQERTAELSLERKELEKRLQSINAESEQLS 450

Query: 121 ILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK 180
           ILSCEK EAI+++ELE+ KLQD+ N LEST AI EEA EALATIR+SMEA REEF+NFK
Sbjct: 451 ILSCEKAEAIDQQELEVVKLQDEVNTLESTSAIIEEAIEALATIRQSMEATREEFKNFK 509

[Close]

BLAST of PI0025738 vs. ExPASy TrEMBL
Match: A0A5D3C7S4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00680 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.3e-62
Identity = 139/179 (77.65%), Postives = 156/179 (87.15%), Query Frame = 0


Query: 1   MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLL 60
           M T FEYIPRL+PEI  VLSGI KI AD+LTPLE+YLNSYLKRVDNFNDVQSSY AQLL 
Sbjct: 1   MRTPFEYIPRLRPEIATVLSGIEKIHADDLTPLEEYLNSYLKRVDNFNDVQSSYFAQLLS 60

Query: 61  TDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSLEKKELESKLQSINTESEQLS 120
           TDK  QL+EKTS IKEALTL++QL+ED KVIQER  +LSLE+KEL+ +LQSIN ESEQLS
Sbjct: 61  TDKARQLNEKTSVIKEALTLVEQLREDVKVIQERTAELSLERKELKKRLQSINAESEQLS 120

Query: 121 ILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK 180
           ILSCEK EAI+++EL+I KLQDK N LEST AITEEA EALATI KSM+AAREEF+NFK
Sbjct: 121 ILSCEKAEAIDQQELKIFKLQDKVNTLESTPAITEEAIEALATICKSMKAAREEFKNFK 179

[Close]

BLAST of PI0025738 vs. ExPASy TrEMBL
Match: A0A5A7VHW8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00370 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.7e-62
Identity = 138/179 (77.09%), Postives = 155/179 (86.59%), Query Frame = 0


Query: 1   MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLL 60
           M T FEYIPRL+PEI  VLSGI KI AD LT LE+YLNSYLKRVDNFNDVQSSYSAQLL 
Sbjct: 740 MRTPFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLS 799

Query: 61  TDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSLEKKELESKLQSINTESEQLS 120
           TDK  QL+EKTS IKE LTL+ QL+ DAKVIQER  +LSLE+KELE +L+SIN ESEQLS
Sbjct: 800 TDKARQLNEKTSAIKEVLTLVKQLRGDAKVIQERTAELSLERKELEKRLRSINAESEQLS 859

Query: 121 ILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK 180
           ILSCEK EAI+++ELE+AKLQD+ N LEST AITEEA EALAT+R+SMEAAREEF+NFK
Sbjct: 860 ILSCEKAEAIDQQELEVAKLQDEVNTLESTPAITEEAIEALATVRQSMEAAREEFKNFK 918

[Close]

BLAST of PI0025738 vs. ExPASy TrEMBL
Match: A0A5A7V3X5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00140 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.9e-62
Identity = 137/179 (76.54%), Postives = 153/179 (85.47%), Query Frame = 0


Query: 1   MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLL 60
           M T FEYIPRL+PEI  VLSGI KI  + LTPLE+YLNSYLKRVDNFNDVQSSYSAQLL 
Sbjct: 310 MRTPFEYIPRLRPEIATVLSGIEKIHTNGLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLS 369

Query: 61  TDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSLEKKELESKLQSINTESEQLS 120
           TDK  QLDEKTS I+EALTLM++L+EDA VIQER  QLSLEKKELE +LQS+N ESEQLS
Sbjct: 370 TDKARQLDEKTSAIEEALTLMEKLREDANVIQERAMQLSLEKKELERRLQSLNAESEQLS 429

Query: 121 ILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK 180
           ILSCEK EAI ++ELE+AKLQD+ N LE T AITEE  EALA +R+SMEAAREEF+NFK
Sbjct: 430 ILSCEKIEAIYQQELEVAKLQDEVNTLEGTPAITEEVIEALAMVRRSMEAAREEFKNFK 488

[Close]

BLAST of PI0025738 vs. NCBI nr
Match: TYK03767.1 (hypothetical protein E5676_scaffold863G001500 [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-62
Identity = 140/179 (78.21%), Postives = 155/179 (86.59%), Query Frame = 0


Query: 1   MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLL 60
           M TSFEYIPRL+PEI  VLSGI KI AD LT LE+YLNSYLKRVDNFNDVQSSYSAQLL 
Sbjct: 331 MRTSFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLS 390

Query: 61  TDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSLEKKELESKLQSINTESEQLS 120
           TDK  QL+EKTS IKEALTL+ QL+ DAKVIQER  +LSLE+KELE +LQSIN ESEQLS
Sbjct: 391 TDKARQLNEKTSAIKEALTLVKQLRGDAKVIQERTAELSLERKELEKRLQSINAESEQLS 450

Query: 121 ILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK 180
           ILSCEK EAI+++ELE+AKLQD+ N LEST AI EEA EALATIR+SMEA REEF+NFK
Sbjct: 451 ILSCEKAEAIDQQELEVAKLQDEVNTLESTPAIIEEAIEALATIRQSMEATREEFKNFK 509

[Close]

BLAST of PI0025738 vs. NCBI nr
Match: TYK06376.1 (hypothetical protein E5676_scaffold163G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 249.2 bits (635), Expect = 2.7e-62
Identity = 139/179 (77.65%), Postives = 156/179 (87.15%), Query Frame = 0


Query: 1   MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLL 60
           M T FEYIPRL+PEI  VLSGI KI AD+LTPLE+YLNSYLKRVDNFNDVQSSY AQLL 
Sbjct: 1   MRTPFEYIPRLRPEIATVLSGIEKIHADDLTPLEEYLNSYLKRVDNFNDVQSSYFAQLLS 60

Query: 61  TDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSLEKKELESKLQSINTESEQLS 120
           TDK  QL+EKTS IKEALTL++QL+ED KVIQER  +LSLE+KEL+ +LQSIN ESEQLS
Sbjct: 61  TDKARQLNEKTSVIKEALTLVEQLREDVKVIQERTAELSLERKELKKRLQSINAESEQLS 120

Query: 121 ILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK 180
           ILSCEK EAI+++EL+I KLQDK N LEST AITEEA EALATI KSM+AAREEF+NFK
Sbjct: 121 ILSCEKAEAIDQQELKIFKLQDKVNTLESTPAITEEAIEALATICKSMKAAREEFKNFK 179

[Close]

BLAST of PI0025738 vs. NCBI nr
Match: KAA0061097.1 (hypothetical protein E6C27_scaffold348G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 249.2 bits (635), Expect = 2.7e-62
Identity = 139/179 (77.65%), Postives = 154/179 (86.03%), Query Frame = 0


Query: 1   MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLL 60
           M TSFEYIPRL+PEI  VLSGI KI AD LT LE+YLNSYLKRVDNFNDVQSSYSAQLL 
Sbjct: 331 MRTSFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLS 390

Query: 61  TDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSLEKKELESKLQSINTESEQLS 120
           TDK  QL+EKTS IKEALTL+ QL+ DAKVIQER  +LSLE+KELE +LQSIN ESEQLS
Sbjct: 391 TDKARQLNEKTSAIKEALTLVKQLRGDAKVIQERTAELSLERKELEKRLQSINAESEQLS 450

Query: 121 ILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK 180
           ILSCEK EAI+++ELE+ KLQD+ N LEST AI EEA EALATIR+SMEA REEF+NFK
Sbjct: 451 ILSCEKAEAIDQQELEVVKLQDEVNTLESTSAIIEEAIEALATIRQSMEATREEFKNFK 509

[Close]

BLAST of PI0025738 vs. NCBI nr
Match: KAA0065375.1 (hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 248.8 bits (634), Expect = 3.5e-62
Identity = 138/179 (77.09%), Postives = 155/179 (86.59%), Query Frame = 0


Query: 1   MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLL 60
           M T FEYIPRL+PEI  VLSGI KI AD LT LE+YLNSYLKRVDNFNDVQSSYSAQLL 
Sbjct: 740 MRTPFEYIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLS 799

Query: 61  TDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSLEKKELESKLQSINTESEQLS 120
           TDK  QL+EKTS IKE LTL+ QL+ DAKVIQER  +LSLE+KELE +L+SIN ESEQLS
Sbjct: 800 TDKARQLNEKTSAIKEVLTLVKQLRGDAKVIQERTAELSLERKELEKRLRSINAESEQLS 859

Query: 121 ILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK 180
           ILSCEK EAI+++ELE+AKLQD+ N LEST AITEEA EALAT+R+SMEAAREEF+NFK
Sbjct: 860 ILSCEKAEAIDQQELEVAKLQDEVNTLESTPAITEEAIEALATVRQSMEAAREEFKNFK 918

[Close]

BLAST of PI0025738 vs. NCBI nr
Match: KAA0060431.1 (hypothetical protein E6C27_scaffold22G002540 [Cucumis melo var. makuwa] >TYK18520.1 hypothetical protein E5676_scaffold119G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 248.1 bits (632), Expect = 5.9e-62
Identity = 137/179 (76.54%), Postives = 153/179 (85.47%), Query Frame = 0


Query: 1   MHTSFEYIPRLKPEITKVLSGIAKIQADNLTPLEKYLNSYLKRVDNFNDVQSSYSAQLLL 60
           M T FEYIPRL+PEI  VLSGI KI  + LTPLE+YLNSYLKRVDNFNDVQSSYSAQLL 
Sbjct: 310 MRTPFEYIPRLRPEIATVLSGIEKIHTNGLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLS 369

Query: 61  TDKTHQLDEKTSTIKEALTLMDQLQEDAKVIQERVTQLSLEKKELESKLQSINTESEQLS 120
           TDK  QLDEKTS I+EALTLM++L+EDA VIQER  QLSLEKKELE +LQS+N ESEQLS
Sbjct: 370 TDKARQLDEKTSAIEEALTLMEKLREDANVIQERAMQLSLEKKELERRLQSLNAESEQLS 429

Query: 121 ILSCEKNEAINRKELEIAKLQDKANALESTLAITEEATEALATIRKSMEAAREEFRNFK 180
           ILSCEK EAI ++ELE+AKLQD+ N LE T AITEE  EALA +R+SMEAAREEF+NFK
Sbjct: 430 ILSCEKIEAIYQQELEVAKLQDEVNTLEGTPAITEEVIEALAMVRRSMEAAREEFKNFK 488

The following BLAST results are available for this feature:

BLAST of PI0025738 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025738 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BW91	5.8e-63	78.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V2J6	1.3e-62	77.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C7S4	1.3e-62	77.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VHW8	1.7e-62	77.09	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7V3X5	2.9e-62	76.54	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of PI0025738 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03767.1	1.2e-62	78.21	hypothetical protein E5676_scaffold863G001500 [Cucumis melo var. makuwa]	[more]
TYK06376.1	2.7e-62	77.65	hypothetical protein E5676_scaffold163G00680 [Cucumis melo var. makuwa]	[more]
KAA0061097.1	2.7e-62	77.65	hypothetical protein E6C27_scaffold348G00060 [Cucumis melo var. makuwa]	[more]
KAA0065375.1	3.5e-62	77.09	hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]	[more]
KAA0060431.1	5.9e-62	76.54	hypothetical protein E6C27_scaffold22G002540 [Cucumis melo var. makuwa] >TYK1852...	[more]

BLAST of PI0025738 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 130..179
None	No IPR available	COILS	Coil	Coil	coord: 67..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025738.1	PI0025738.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane