PI0025709 (gene) Melon (PI 482460) v1

Overview
NamePI0025709
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr05: 11011333 .. 11011536 (-)
RNA-Seq ExpressionPI0025709
SyntenyPI0025709
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAATAACAACAATAGAAACGTACTACCTCCGCAAGCTGCCCAAGAACAGAACGCCGCCTACATGACGCATGACTTAAATAGGCCAATTAGGTCTTATGCTGCACCCAACCTTTACAACTTCAACCCAGGAATCGCCTACCCTGTGTTCGGCGAGAACGTTAGATTTGAGATCAAGCCTGTAATGTTGCAGATGATCTAA

mRNA sequence

ATGGATAATAACAACAATAGAAACGTACTACCTCCGCAAGCTGCCCAAGAACAGAACGCCGCCTACATGACGCATGACTTAAATAGGCCAATTAGGTCTTATGCTGCACCCAACCTTTACAACTTCAACCCAGGAATCGCCTACCCTGTGTTCGGCGAGAACGTTAGATTTGAGATCAAGCCTGTAATGTTGCAGATGATCTAA

Coding sequence (CDS)

ATGGATAATAACAACAATAGAAACGTACTACCTCCGCAAGCTGCCCAAGAACAGAACGCCGCCTACATGACGCATGACTTAAATAGGCCAATTAGGTCTTATGCTGCACCCAACCTTTACAACTTCAACCCAGGAATCGCCTACCCTGTGTTCGGCGAGAACGTTAGATTTGAGATCAAGCCTGTAATGTTGCAGATGATCTAA

Protein sequence

MDNNNNRNVLPPQAAQEQNAAYMTHDLNRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVMLQMI
Homology
BLAST of PI0025709 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.9e-15
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 0

Query: 1  MDNNNNRNVLPPQAAQEQNAAYMTHDLNRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIK 60
          M+N NN+ +   QAAQ  N  Y+  D +RPIRSYA+PNLY+FNPGIAYP F EN RFEIK
Sbjct: 1  MNNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIK 60

Query: 61 PVMLQMI 68
           VMLQ+I
Sbjct: 61 LVMLQII 67

BLAST of PI0025709 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.1e-14
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 5  NNRNVLPPQAAQEQNAAYMTHDLNRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVML 64
          NN+N    Q  QEQN AY+ HDL++PI+SYA+PNLY+FNPGIAY  FGENV FEIK +ML
Sbjct: 2  NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 65 QM 67
           M
Sbjct: 62 YM 63

BLAST of PI0025709 vs. ExPASy TrEMBL
Match: A0A5D3CAB5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00060 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 0

Query: 2   DNNNNRNVLPPQAAQEQNAAYMTHDLNRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKP 61
           ++ NN+     QA Q  N  Y+ H+ +RPIRS  +PNLY FNPGI YP FGEN RF+IKP
Sbjct: 36  NSQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKP 95

Query: 62  VMLQMI 68
           VML ++
Sbjct: 96  VMLSLL 101

BLAST of PI0025709 vs. ExPASy TrEMBL
Match: A0A5A7UXZ2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00610 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 0

Query: 2   DNNNNRNVLPPQAAQEQNAAYMTHDLNRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKP 61
           ++ NN+     QA Q  N  Y+ H+ +RPIRS  +PNLY FNPGI YP FGEN RF+IKP
Sbjct: 36  NSQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKP 95

Query: 62  VMLQMI 68
           VML ++
Sbjct: 96  VMLSLL 101

BLAST of PI0025709 vs. ExPASy TrEMBL
Match: A0A5D3BVN1 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00390 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-09
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 4  NNNRNVLPPQAAQ--EQNAAYMTHDLNRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKP 63
          +N  NV+P  +A   + N   + H+L+ PIR+Y + NLY+FN GIAY VFGEN  FE+KP
Sbjct: 3  SNKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEVKP 62

Query: 64 VMLQMI 68
          VMLQMI
Sbjct: 63 VMLQMI 68

BLAST of PI0025709 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.0e-14
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 0

Query: 1  MDNNNNRNVLPPQAAQEQNAAYMTHDLNRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIK 60
          M+N NN+ +   QAAQ  N  Y+  D +RPIRSYA+PNLY+FNPGIAYP F EN RFEIK
Sbjct: 1  MNNQNNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIK 60

Query: 61 PVMLQMI 68
           VMLQ+I
Sbjct: 61 LVMLQII 67

BLAST of PI0025709 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 5  NNRNVLPPQAAQEQNAAYMTHDLNRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKPVML 64
          NN+N    Q  QEQN AY+ HDL++PI+SYA+PNLY+FNPGIAY  FGENV FEIK +ML
Sbjct: 2  NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 65 QM 67
           M
Sbjct: 62 YM 63

BLAST of PI0025709 vs. NCBI nr
Match: TYK08803.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 4.0e-11
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 0

Query: 2   DNNNNRNVLPPQAAQEQNAAYMTHDLNRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKP 61
           ++ NN+     QA Q  N  Y+ H+ +RPIRS  +PNLY FNPGI YP FGEN RF+IKP
Sbjct: 36  NSQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKP 95

Query: 62  VMLQMI 68
           VML ++
Sbjct: 96  VMLSLL 101

BLAST of PI0025709 vs. NCBI nr
Match: KAA0060833.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 4.0e-11
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 0

Query: 2   DNNNNRNVLPPQAAQEQNAAYMTHDLNRPIRSYAAPNLYNFNPGIAYPVFGENVRFEIKP 61
           ++ NN+     QA Q  N  Y+ H+ +RPIRS  +PNLY FNPGI YP FGEN RF+IKP
Sbjct: 36  NSQNNQEAPANQAIQVVNLTYLAHNRDRPIRSNTSPNLYGFNPGIDYPAFGENERFDIKP 95

Query: 62  VMLQMI 68
           VML ++
Sbjct: 96  VMLSLL 101

BLAST of PI0025709 vs. NCBI nr
Match: XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 3.7e-09
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 2   DNNNNRNVLPPQAAQE--QNAAYMTHDLNRPIRSYAAPNLYNFNPGIAYPVFGENVRFEI 61
           DNNNN      Q      Q+  ++  D N PIR+YAAPNLY+F+PGI+ P+  EN RFEI
Sbjct: 37  DNNNNEAPEGNQGVNRPVQDPVFLAADHNIPIRNYAAPNLYDFSPGISRPIVEENARFEI 96

Query: 62  KPVMLQMI 68
           KPVM+QMI
Sbjct: 97  KPVMVQMI 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2U74.9e-1564.18Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UDN87.1e-1466.13Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CAB51.9e-1154.55Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5A7UXZ21.9e-1154.55Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5D3BVN11.8e-0954.55Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
Match NameE-valueIdentityDescription
KAA0062403.11.0e-1464.18putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
KAA0051815.11.5e-1366.13hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142... [more]
TYK08803.14.0e-1154.55Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0060833.14.0e-1154.55Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
XP_038887458.13.7e-0954.41uncharacterized protein LOC120077591 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0025709.1PI0025709.1mRNA