Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACGTCTTCAAGGGTCCCGAAGCACCACTGGACGAAAGAGGAGGATGTCGTCCTTGTTGAATGTCTGGTGGAATTGGTATCTTCCGGCGGGTGGAGGTCGGATAACGGGACTTTTAGACCTGGATACCATAGTCATCTACAGAAAATGATTGGCGAGAGGATGCCCAGACATAACATAACGGCTACGACAATAGATTGTCGGATCAAGACAATGAAAAGAGCATTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGTTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGGTATGTTCTTTATTCTGTCCATTACTGTTCCTTTCTAATTATAAATTGTCTAATTTGTTACCACAACACTTGTACAAAGTCATCCAGCCGCAAATGGCCTCCTAAACAAACTCTTTCCCCACTACGACGACCTTTGCTATGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGGTGATGTTGGGTCGAACGTGCCTCTAGGCTTCGAAGGATTTGCCCACTACGACGGGAACGATATGGAGAACCTGATGATGTACAGTTAGGGCTTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGTAGGCGGCATAAATTATTCGCAGTGCCATGGAATATGCTAATGACCAACTTAAGGCCATTGCAGAATGGCCCAAAGAACAACGACAAGATACAAGCGTGACACGTGCGGAAGTTGTTAGACAGCTACAGGGAATCCAGGAGCTGAGTCGACAACAGGGCTCGTTGTATGGGCATATTGATGCGCAGCGTGGATGA
mRNA sequence
ATGGCAACGTCTTCAAGGGTCCCGAAGCACCACTGGACGAAAGAGGAGGATGTCGTCCTTGTTGAATGTCTGGTGGAATTGGTATCTTCCGGCGGGTGGAGGTCGGATAACGGGACTTTTAGACCTGGATACCATAGTCATCTACAGAAAATGATTGGCGAGAGGATGCCCAGACATAACATAACGGCTACGACAATAGATTGTCGGATCAAGACAATGAAAAGAGCATTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGTTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGGGCTTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTGAATGGCCCAAAGAACAACGACAAGATACAAGCGTGACACGTGCGGAAGTTGTTAGACAGCTACAGGGAATCCAGGAGCTGAGTCGACAACAGGGCTCGTTGTATGGGCATATTGATGCGCAGCGTGGATGA
Coding sequence (CDS)
ATGGCAACGTCTTCAAGGGTCCCGAAGCACCACTGGACGAAAGAGGAGGATGTCGTCCTTGTTGAATGTCTGGTGGAATTGGTATCTTCCGGCGGGTGGAGGTCGGATAACGGGACTTTTAGACCTGGATACCATAGTCATCTACAGAAAATGATTGGCGAGAGGATGCCCAGACATAACATAACGGCTACGACAATAGATTGTCGGATCAAGACAATGAAAAGAGCATTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGTTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGGGCTTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTGAATGGCCCAAAGAACAACGACAAGATACAAGCGTGACACGTGCGGAAGTTGTTAGACAGCTACAGGGAATCCAGGAGCTGAGTCGACAACAGGGCTCGTTGTATGGGCATATTGATGCGCAGCGTGGATGA
Protein sequence
MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHNITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKGLDMSPDDIMTPRSVRMSEARPEWPKEQRQDTSVTRAEVVRQLQGIQELSRQQGSLYGHIDAQRG
Homology
BLAST of PI0025707 vs. ExPASy TrEMBL
Match:
A0A5A7U098 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00330 PE=4 SV=1)
HSP 1 Score: 190.3 bits (482), Expect = 7.0e-45
Identity = 110/263 (41.83%), Postives = 132/263 (50.19%), Query Frame = 0
Query: 1 MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHN 60
MA+SSR+PKH WTKEE+ LVECLVELV++GGWRSDNGTFRPGY + L +M+ ++P N
Sbjct: 1 MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60
Query: 61 ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVK-------- 120
I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI+ EK+LFD WVK
Sbjct: 61 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPMAKGL 120
Query: 121 ----------------------------------------------------------GL 163
GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAFAADAAPDTNFSPMYSSGL 180
BLAST of PI0025707 vs. ExPASy TrEMBL
Match:
A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)
HSP 1 Score: 188.7 bits (478), Expect = 2.0e-44
Identity = 109/263 (41.44%), Postives = 131/263 (49.81%), Query Frame = 0
Query: 1 MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHN 60
MA+SSR+PKH WTKEE+ LVECLVELV++GGWRSDNGTFRPGY + L +M+ ++P N
Sbjct: 1 MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60
Query: 61 ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVK-------- 120
I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI+ EK+LFD WVK
Sbjct: 61 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGL 120
Query: 121 ----------------------------------------------------------GL 163
GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180
BLAST of PI0025707 vs. ExPASy TrEMBL
Match:
A0A5A7U216 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001370 PE=4 SV=1)
HSP 1 Score: 188.0 bits (476), Expect = 3.5e-44
Identity = 105/239 (43.93%), Postives = 127/239 (53.14%), Query Frame = 0
Query: 1 MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHN 60
M +SSR+PKH WTKEE+V LVECLVELV++GGWRSDNGTFRPGY + L +M+ ++P N
Sbjct: 1 MTSSSRLPKHTWTKEEEVGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60
Query: 61 ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSW---------- 120
I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCIIAEK++FD W
Sbjct: 61 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIIAEKEVFDDWSHPAAKGLLN 120
Query: 121 ------------------------------------------------------VKGLDM 163
GL+M
Sbjct: 121 KSFVHYDELSYVFGKDPATGGRAESFTDIGSNDPAGYDAFAADAVPDTDFPPMYSPGLNM 180
BLAST of PI0025707 vs. ExPASy TrEMBL
Match:
E5GBS5 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 186.4 bits (472), Expect = 1.0e-43
Identity = 98/197 (49.75%), Postives = 121/197 (61.42%), Query Frame = 0
Query: 1 MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHN 60
MA+SSR KH W KE+D LVECLV+LV+S GW SDNGTF GY+S L +M+ ++M N
Sbjct: 1 MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60
Query: 61 ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKGLDMSPDD 120
I ATTID IKTM++ F AISE+RGP+CSGF WNDEL II EKD+FD+W+KGL+MSPD+
Sbjct: 61 IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 120
Query: 121 IMTPRSVRMSEAR-----------------------------------PEWPKEQRQDTS 163
M R R + R +WP + QD S
Sbjct: 121 FMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDWPILRNQDAS 180
BLAST of PI0025707 vs. ExPASy TrEMBL
Match:
A0A5D3BVH6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00320 PE=4 SV=1)
HSP 1 Score: 182.6 bits (462), Expect = 1.5e-42
Identity = 97/197 (49.24%), Postives = 120/197 (60.91%), Query Frame = 0
Query: 1 MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHN 60
MA+SSR KH W KE+D LVECLV+LV+S GW SDNGTF GY+S L +M+ ++M N
Sbjct: 1 MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60
Query: 61 ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKGLDMSPDD 120
I ATTID IKTM++ F AISE+RGP+CSGF WNDEL II EKD+FD+W+KGL+MSPD+
Sbjct: 61 IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 120
Query: 121 IMTPRSVRMSEAR-----------------------------------PEWPKEQRQDTS 163
M R R + R +W + QD S
Sbjct: 121 FMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDWLILRNQDAS 180
BLAST of PI0025707 vs. NCBI nr
Match:
KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 190.3 bits (482), Expect = 1.4e-44
Identity = 110/263 (41.83%), Postives = 132/263 (50.19%), Query Frame = 0
Query: 1 MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHN 60
MA+SSR+PKH WTKEE+ LVECLVELV++GGWRSDNGTFRPGY + L +M+ ++P N
Sbjct: 1 MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60
Query: 61 ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVK-------- 120
I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI+ EK+LFD WVK
Sbjct: 61 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPMAKGL 120
Query: 121 ----------------------------------------------------------GL 163
GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAFAADAAPDTNFSPMYSSGL 180
BLAST of PI0025707 vs. NCBI nr
Match:
TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 188.7 bits (478), Expect = 4.2e-44
Identity = 109/263 (41.44%), Postives = 131/263 (49.81%), Query Frame = 0
Query: 1 MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHN 60
MA+SSR+PKH WTKEE+ LVECLVELV++GGWRSDNGTFRPGY + L +M+ ++P N
Sbjct: 1 MASSSRLPKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCN 60
Query: 61 ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVK-------- 120
I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCI+ EK+LFD WVK
Sbjct: 61 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGL 120
Query: 121 ----------------------------------------------------------GL 163
GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180
BLAST of PI0025707 vs. NCBI nr
Match:
KAA0047509.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 188.0 bits (476), Expect = 7.2e-44
Identity = 105/239 (43.93%), Postives = 127/239 (53.14%), Query Frame = 0
Query: 1 MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHN 60
M +SSR+PKH WTKEE+V LVECLVELV++GGWRSDNGTFRPGY + L +M+ ++P N
Sbjct: 1 MTSSSRLPKHTWTKEEEVGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60
Query: 61 ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSW---------- 120
I A+TID RIK MKR F A++EMRGP CSGFGWNDE KCIIAEK++FD W
Sbjct: 61 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIIAEKEVFDDWSHPAAKGLLN 120
Query: 121 ------------------------------------------------------VKGLDM 163
GL+M
Sbjct: 121 KSFVHYDELSYVFGKDPATGGRAESFTDIGSNDPAGYDAFAADAVPDTDFPPMYSPGLNM 180
BLAST of PI0025707 vs. NCBI nr
Match:
ADN33917.1 (hypothetical protein [Cucumis melo subsp. melo])
HSP 1 Score: 186.4 bits (472), Expect = 2.1e-43
Identity = 98/197 (49.75%), Postives = 121/197 (61.42%), Query Frame = 0
Query: 1 MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHN 60
MA+SSR KH W KE+D LVECLV+LV+S GW SDNGTF GY+S L +M+ ++M N
Sbjct: 1 MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60
Query: 61 ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKGLDMSPDD 120
I ATTID IKTM++ F AISE+RGP+CSGF WNDEL II EKD+FD+W+KGL+MSPD+
Sbjct: 61 IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 120
Query: 121 IMTPRSVRMSEAR-----------------------------------PEWPKEQRQDTS 163
M R R + R +WP + QD S
Sbjct: 121 FMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDWPILRNQDAS 180
BLAST of PI0025707 vs. NCBI nr
Match:
KAA0060635.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 182.6 bits (462), Expect = 3.0e-42
Identity = 97/197 (49.24%), Postives = 120/197 (60.91%), Query Frame = 0
Query: 1 MATSSRVPKHHWTKEEDVVLVECLVELVSSGGWRSDNGTFRPGYHSHLQKMIGERMPRHN 60
MA+SSR KH W KE+D LVECLV+LV+S GW SDNGTF GY+S L +M+ ++M N
Sbjct: 166 MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 225
Query: 61 ITATTIDCRIKTMKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKGLDMSPDD 120
I ATTID IKTM++ F AISE+RGP+CSGF WNDEL II EKD+FD+W+KGL+MSPD+
Sbjct: 226 IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 285
Query: 121 IMTPRSVRMSEAR-----------------------------------PEWPKEQRQDTS 163
M R R + R +W + QD S
Sbjct: 286 FMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDWLILRNQDAS 345
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U098 | 7.0e-45 | 41.83 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3C1M0 | 2.0e-44 | 41.44 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7U216 | 3.5e-44 | 43.93 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| E5GBS5 | 1.0e-43 | 49.75 | Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
| A0A5D3BVH6 | 1.5e-42 | 49.24 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0047075.1 | 1.4e-44 | 41.83 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK05082.1 | 4.2e-44 | 41.44 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0047509.1 | 7.2e-44 | 43.93 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| ADN33917.1 | 2.1e-43 | 49.75 | hypothetical protein [Cucumis melo subsp. melo] | [more] |
| KAA0060635.1 | 3.0e-42 | 49.24 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
