Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGTTGGAGTAAGAGAATGGAAGAATTAAAAGACATGAGCGAGAAGCAAGAAGCAAGAGCGAATTACTACGACACCAAATTACACACCATCATTGCAGCTTATTTCATTTGGGAACGCGTCTTCTTCTTCTTCATCTCCCAGAAAACTAATAATAATTCTTCTTCTTCCTCCATCAGCTGCAATAATAATGGCAACAACTTGTGGGTGATTGTTGCACTAAGTTGTTTATGCAGCCTTGTTTACATGCTCCTTTTTATCGACACGGCGCTTGTGCTCTACAGAACAGAGCACCAGCTCAATCTCATTCTCCAAACACAAGCCCAACTTTATGGACAAATCAAAAGAGAAGCTGCTGCGCATGCTGCTGACAACAATATAAATCCATCAAGAATAATGGAGATGGAGGCTGGTGATCATGATCAGCCGCTGGAGGAGGAACTCGTACTCATAATAAACTCAAATAATTCAGCATTATTATTTACAAGGAGTAGGGAGAGGAAATTTTATATGTACACAATATTCTGTGCTTTGGTTGGTGTTGCTGCCTTGGAATTATATGTCTGCAAGTCTATGCTTTGCAACTGA
mRNA sequence
ATGAGTAGTTGGAGTAAGAGAATGGAAGAATTAAAAGACATGAGCGAGAAGCAAGAAGCAAGAGCGAATTACTACGACACCAAATTACACACCATCATTGCAGCTTATTTCATTTGGGAACGCGTCTTCTTCTTCTTCATCTCCCAGAAAACTAATAATAATTCTTCTTCTTCCTCCATCAGCTGCAATAATAATGGCAACAACTTGTGGGTGATTGTTGCACTAAGTTGTTTATGCAGCCTTGTTTACATGCTCCTTTTTATCGACACGGCGCTTGTGCTCTACAGAACAGAGCACCAGCTCAATCTCATTCTCCAAACACAAGCCCAACTTTATGGACAAATCAAAAGAGAAGCTGCTGCGCATGCTGCTGACAACAATATAAATCCATCAAGAATAATGGAGATGGAGGCTGGTGATCATGATCAGCCGCTGGAGGAGGAACTCGTACTCATAATAAACTCAAATAATTCAGCATTATTATTTACAAGGAGTAGGGAGAGGAAATTTTATATGTACACAATATTCTGTGCTTTGGTTGGTGTTGCTGCCTTGGAATTATATGTCTGCAAGTCTATGCTTTGCAACTGA
Coding sequence (CDS)
ATGAGTAGTTGGAGTAAGAGAATGGAAGAATTAAAAGACATGAGCGAGAAGCAAGAAGCAAGAGCGAATTACTACGACACCAAATTACACACCATCATTGCAGCTTATTTCATTTGGGAACGCGTCTTCTTCTTCTTCATCTCCCAGAAAACTAATAATAATTCTTCTTCTTCCTCCATCAGCTGCAATAATAATGGCAACAACTTGTGGGTGATTGTTGCACTAAGTTGTTTATGCAGCCTTGTTTACATGCTCCTTTTTATCGACACGGCGCTTGTGCTCTACAGAACAGAGCACCAGCTCAATCTCATTCTCCAAACACAAGCCCAACTTTATGGACAAATCAAAAGAGAAGCTGCTGCGCATGCTGCTGACAACAATATAAATCCATCAAGAATAATGGAGATGGAGGCTGGTGATCATGATCAGCCGCTGGAGGAGGAACTCGTACTCATAATAAACTCAAATAATTCAGCATTATTATTTACAAGGAGTAGGGAGAGGAAATTTTATATGTACACAATATTCTGTGCTTTGGTTGGTGTTGCTGCCTTGGAATTATATGTCTGCAAGTCTATGCTTTGCAACTGA
Protein sequence
MSSWSKRMEELKDMSEKQEARANYYDTKLHTIIAAYFIWERVFFFFISQKTNNNSSSSSISCNNNGNNLWVIVALSCLCSLVYMLLFIDTALVLYRTEHQLNLILQTQAQLYGQIKREAAAHAADNNINPSRIMEMEAGDHDQPLEEELVLIINSNNSALLFTRSRERKFYMYTIFCALVGVAALELYVCKSMLCN
Homology
BLAST of PI0025603 vs. ExPASy TrEMBL
Match:
A0A0A0L822 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G484330 PE=4 SV=1)
HSP 1 Score: 174.9 bits (442), Expect = 3.4e-40
Identity = 113/192 (58.85%), Postives = 137/192 (71.35%), Query Frame = 0
Query: 6 KRMEELKDMSEKQEARANYYDTKLHTIIAAYFIWERVFFFFISQKTNNNSSSSSISCNNN 65
KRMEELK MSEKQEA ANYYDTKLHTIIAAYFIWER F F IS KTN+ + SS+ C+ N
Sbjct: 8 KRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFSSLICHAN 67
Query: 66 GNNLW-VIVALSCLCSLVYMLLFIDTALVLYRTEHQLNLILQTQAQLYGQIKREAAAHAA 125
W +I+ALS L SLVY+LL++D AL+LYR+E + NLIL AQLY QI +
Sbjct: 68 ----WRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISK---IKQE 127
Query: 126 DNNINPSRIMEMEAGDHDQPLEEELVLIINSNNSALLFTRSRERKFYMYTIFCALVGVAA 185
N+I+ S MEA EE+L+L+INS+++ F RS ER FYM TIFCALV VA+
Sbjct: 128 FNSIDSS---SMEA-------EEDLILLINSSST---FRRSEERIFYMSTIFCALVCVAS 179
Query: 186 LELYVCKSMLCN 197
LELY CKS+LC+
Sbjct: 188 LELYACKSILCS 179
BLAST of PI0025603 vs. ExPASy TrEMBL
Match:
A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)
HSP 1 Score: 107.8 bits (268), Expect = 5.1e-20
Identity = 71/191 (37.17%), Postives = 111/191 (58.12%), Query Frame = 0
Query: 6 KRMEELKDMSEKQEARANYYDTKLHTIIAAYFIWERVFFFFISQKTNNNSSSSSISCNNN 65
++ EELKD++EKQE+R YY+TK+ I+ Y I+ R+FFF ISQ +SSS +C
Sbjct: 8 RKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQ------TSSSFNC--- 67
Query: 66 GNNLWVIVALSCLCSLVYMLLFIDTALVLYRTEHQLNLILQTQAQLYGQIKREAAAHAAD 125
+ WVI+ALS LCS +Y LLF+D +L+RT++QL++I + +L+ QI
Sbjct: 68 -KDWWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQI----LVSKNQ 127
Query: 126 NNINPSRIMEMEAGDHDQPLEEELVLIINSNNSALLFTRSRERKFYMYTIFCALVGVAAL 185
+++ S +G + E+++++ + R RK Y+Y AL+ V A+
Sbjct: 128 DDVGLSMETGESSGGFEFGFHEKMLMLDH--------FRIVGRKVYIYFTVSALLAVTAI 176
Query: 186 ELYVCKSMLCN 197
ELYV K +LCN
Sbjct: 188 ELYVSKYVLCN 176
BLAST of PI0025603 vs. ExPASy TrEMBL
Match:
A0A6J1DX74 (uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023953 PE=4 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 6.2e-18
Identity = 75/194 (38.66%), Postives = 107/194 (55.15%), Query Frame = 0
Query: 6 KRMEELKDMSEKQEARANYYDTKLHTIIAAYFIWERVFFFFISQKTNNNSSSSSISCNNN 65
++ ELKD++EKQE+R Y++ K I++ Y I R+FFF ISQ +SS C
Sbjct: 8 RKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQ-------TSSSKC--- 67
Query: 66 GNNLWVIVALSCLCSLVYMLLFIDTALVLYRTEHQLNLILQTQAQLYGQIKREAAAHAAD 125
++ WVI++LS LCS VY LLF+D A LY+T+ QL++I + ++ QI A
Sbjct: 68 -HDWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQIL------VAQ 127
Query: 126 NNINPSRIMEMEAGDHDQPLE---EELVLIINSNNSALLFTRSRERKFYMYTIFCALVGV 185
N + + ME GD E E +L+++ R RK Y+Y CALV V
Sbjct: 128 NQDDVD--LAMEGGDFSDGFEFGFHEKMLVLD-------HFRFVGRKVYIYFTVCALVAV 175
Query: 186 AALELYVCKSMLCN 197
A+ELYV K +LCN
Sbjct: 188 TAIELYVSKYLLCN 175
BLAST of PI0025603 vs. ExPASy TrEMBL
Match:
A0A0A0KUT0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G562290 PE=4 SV=1)
HSP 1 Score: 97.4 bits (241), Expect = 6.9e-17
Identity = 67/191 (35.08%), Postives = 104/191 (54.45%), Query Frame = 0
Query: 6 KRMEELKDMSEKQEARANYYDTKLHTIIAAYFIWERVFFFFISQKTNNNSSSSSISCNNN 65
K +EEL M++ Q+ R Y+T L I A+ +W R+FFF +SQ + N SS + C
Sbjct: 11 KVLEELNAMADTQKGRVENYETSLQNIAIAFLVWLRLFFFSLSQTSPN---SSLLHC--- 70
Query: 66 GNNLWVIVALSCLCSLVYMLLFIDTALVLYRTEHQLNLILQTQAQLYGQIKREAAAHAAD 125
+ W++ AL+C + +Y+LLFI +L+L RTE QL++I + Q QL+ QI
Sbjct: 71 -KHWWLLFALTCFSAFLYILLFIHNSLMLSRTERQLHVISRQQIQLHQQIWM-------- 130
Query: 126 NNINPSRIMEMEAGDHDQPLEEELVLIINSNNSALLFTRSRERKFYMYTIFCALVGVAAL 185
R+ E+ P E +++ + N + T + ERK Y+ I C +G+ AL
Sbjct: 131 -----LRLQEL-------PQMIEPIIMDHIINGEMGRTSTFERKLYINCILCGFIGIVAL 174
Query: 186 ELYVCKSMLCN 197
ELY +S+LCN
Sbjct: 191 ELYASRSLLCN 174
BLAST of PI0025603 vs. ExPASy TrEMBL
Match:
A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)
HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 65/191 (34.03%), Postives = 105/191 (54.97%), Query Frame = 0
Query: 6 KRMEELKDMSEKQEARANYYDTKLHTIIAAYFIWERVFFFFISQKTNNNSSSSSISCNNN 65
+ E LKD+ EKQE+R Y++++ I AY IW R+FFF ISQ +SSS + C
Sbjct: 8 RNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQ-----TSSSLLKC--- 67
Query: 66 GNNLWVIVALSCLCSLVYMLLFIDTALVLYRTEHQLNLILQTQAQLYGQIKREAAAHAAD 125
+ W+++ LS C+ VY L F++ +LYR +HQ+++I + QA++ QI A +
Sbjct: 68 -IDWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQI---LVARSQL 127
Query: 126 NNINPSRIMEMEAGDHDQPLEEELVLIINSNNSALLFTRSRERKFYMYTIFCALVGVAAL 185
++++ + MEAGD + + + + R ERKFY+ AL+ V A+
Sbjct: 128 DDVD----LAMEAGDSSDGFQFSFHVKLLEYGA----FRIVERKFYICATVSALLAVTAI 178
Query: 186 ELYVCKSMLCN 197
ELY C + C+
Sbjct: 188 ELYACSWLYCD 178
BLAST of PI0025603 vs. NCBI nr
Match:
KAG6579344.1 (hypothetical protein SDJN03_23792, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 174.9 bits (442), Expect = 7.0e-40
Identity = 110/198 (55.56%), Postives = 131/198 (66.16%), Query Frame = 0
Query: 6 KRMEELKDMSEKQEARANYYDTKLHTIIAAYFIWERVFFFFI----SQKTNNNSSSSSIS 65
KRMEE+K M EK E R NYYDTKLH II AY +WERVFFFF TN S+ S++S
Sbjct: 9 KRMEEVKGMWEKVEGRVNYYDTKLHAIIVAYLVWERVFFFFFFFFGVSNTNFASNISTLS 68
Query: 66 CNNNGNNLWVIVALSCLCSLVYMLLFIDTALVLYRTEHQLNLILQTQAQLYGQIKREAAA 125
CN WVIVALSCLCS VYMLLF+D AL+LY ++QLNLILQT QLY Q+
Sbjct: 69 CN---GKWWVIVALSCLCSFVYMLLFVDAALMLYPHQNQLNLILQTHHQLYRQLL----- 128
Query: 126 HAADNNINPSRIMEMEAGD---HDQPLEEELVLIINSNNSALLFTRSRERKFYMYTIFCA 185
A +++ MEAGD H LEEEL+LI N++A R RKFY+YTIFCA
Sbjct: 129 -AIKDSL-------MEAGDEASHGLSLEEELMLI---NSNAAYRRRPWGRKFYVYTIFCA 187
Query: 186 LVGVAALELYVCKSMLCN 197
L+ VA+LELY C S+LC+
Sbjct: 189 LIDVASLELYACNSVLCS 187
BLAST of PI0025603 vs. NCBI nr
Match:
KAE8650729.1 (hypothetical protein Csa_023412 [Cucumis sativus])
HSP 1 Score: 174.9 bits (442), Expect = 7.0e-40
Identity = 113/192 (58.85%), Postives = 137/192 (71.35%), Query Frame = 0
Query: 6 KRMEELKDMSEKQEARANYYDTKLHTIIAAYFIWERVFFFFISQKTNNNSSSSSISCNNN 65
KRMEELK MSEKQEA ANYYDTKLHTIIAAYFIWER F F IS KTN+ + SS+ C+ N
Sbjct: 12 KRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFSSLICHAN 71
Query: 66 GNNLW-VIVALSCLCSLVYMLLFIDTALVLYRTEHQLNLILQTQAQLYGQIKREAAAHAA 125
W +I+ALS L SLVY+LL++D AL+LYR+E + NLIL AQLY QI +
Sbjct: 72 ----WRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISK---IKQE 131
Query: 126 DNNINPSRIMEMEAGDHDQPLEEELVLIINSNNSALLFTRSRERKFYMYTIFCALVGVAA 185
N+I+ S MEA EE+L+L+INS+++ F RS ER FYM TIFCALV VA+
Sbjct: 132 FNSIDSS---SMEA-------EEDLILLINSSST---FRRSEERIFYMSTIFCALVCVAS 183
Query: 186 LELYVCKSMLCN 197
LELY CKS+LC+
Sbjct: 192 LELYACKSILCS 183
BLAST of PI0025603 vs. NCBI nr
Match:
KAG6579352.1 (hypothetical protein SDJN03_23800, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 172.9 bits (437), Expect = 2.7e-39
Identity = 112/198 (56.57%), Postives = 134/198 (67.68%), Query Frame = 0
Query: 6 KRMEELKDMSEKQEARANYYDTKLHTIIAAYFIWERVFFFFISQKTNNNSSSSSISCNNN 65
K MEE++ M EK EA+ NYYDTKLHTII AYF+WERVFFF IS+KT S+ S++SCN
Sbjct: 8 KMMEEVQGMGEKVEAKVNYYDTKLHTIIVAYFVWERVFFFGISKKT-FPSTISTLSCN-- 67
Query: 66 GNNLWVIVALSCLCSLVYMLLFIDTALVLYRTEHQLNLILQTQAQLYGQ---IKREAAAH 125
N WVI+ALSC CS VY+LLF D AL+LYR E+QL+LILQ AQL IK E A
Sbjct: 68 -GNWWVILALSCSCSFVYVLLFFDAALMLYRHENQLHLILQKHAQLCRHLLAIKEEQA-- 127
Query: 126 AADNNINPSRIMEMEAGD---HDQPLEEELVLIINSNNSALLFTRSR--ERKFYMYTIFC 185
++ MEAGD H LEEEL+LI NS F R R ERK ++YTIFC
Sbjct: 128 -------DTKASLMEAGDQASHGLSLEEELMLI----NSTSPFRRRRPWERKVHVYTIFC 187
Query: 186 ALVGVAALELYVCKSMLC 196
A +GVA+LELY CK++LC
Sbjct: 188 AFIGVASLELYACKAVLC 188
BLAST of PI0025603 vs. NCBI nr
Match:
KAG6579345.1 (hypothetical protein SDJN03_23793, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 167.2 bits (422), Expect = 1.5e-37
Identity = 112/198 (56.57%), Postives = 131/198 (66.16%), Query Frame = 0
Query: 6 KRMEELKDMSEKQEARANYYDTKLHTIIAAYFIWERVFFFFISQKTNNNSSSSSISCNNN 65
K MEE++ M E EA+ NYYDTKLH II AYF+WERVFFF IS+KT + S++SCN
Sbjct: 12 KMMEEVQGMGENVEAKVNYYDTKLHNIIVAYFVWERVFFFGISKKT-FPPTISTLSCN-- 71
Query: 66 GNNLWVIVALSCLCSLVYMLLFIDTALVLYRTEHQLNLILQTQAQLYGQ---IKREAAAH 125
N WVI+ALS CS VY+LLF DTAL+LYR E+QL+LILQ AQL IK E A
Sbjct: 72 -GNWWVILALSSSCSFVYVLLFFDTALMLYRHENQLHLILQKHAQLCRHLLAIKEEQADI 131
Query: 126 AADNNINPSRIMEMEAGD---HDQPLEEELVLIINSNNSALLFTRSR--ERKFYMYTIFC 185
A MEAGD H LEEEL+LI NS F R R ERK Y+YTIFC
Sbjct: 132 KAS---------LMEAGDEASHGLSLEEELMLI----NSTSPFRRRRPWERKVYVYTIFC 191
Query: 186 ALVGVAALELYVCKSMLC 196
AL+GVA+LELY CK++LC
Sbjct: 192 ALIGVASLELYACKAVLC 192
BLAST of PI0025603 vs. NCBI nr
Match:
XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])
HSP 1 Score: 107.8 bits (268), Expect = 1.0e-19
Identity = 71/191 (37.17%), Postives = 111/191 (58.12%), Query Frame = 0
Query: 6 KRMEELKDMSEKQEARANYYDTKLHTIIAAYFIWERVFFFFISQKTNNNSSSSSISCNNN 65
++ EELKD++EKQE+R YY+TK+ I+ Y I+ R+FFF ISQ +SSS +C
Sbjct: 8 RKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQ------TSSSFNC--- 67
Query: 66 GNNLWVIVALSCLCSLVYMLLFIDTALVLYRTEHQLNLILQTQAQLYGQIKREAAAHAAD 125
+ WVI+ALS LCS +Y LLF+D +L+RT++QL++I + +L+ QI
Sbjct: 68 -KDWWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQI----LVSKNQ 127
Query: 126 NNINPSRIMEMEAGDHDQPLEEELVLIINSNNSALLFTRSRERKFYMYTIFCALVGVAAL 185
+++ S +G + E+++++ + R RK Y+Y AL+ V A+
Sbjct: 128 DDVGLSMETGESSGGFEFGFHEKMLMLDH--------FRIVGRKVYIYFTVSALLAVTAI 176
Query: 186 ELYVCKSMLCN 197
ELYV K +LCN
Sbjct: 188 ELYVSKYVLCN 176
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L822 | 3.4e-40 | 58.85 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G484330 PE=4 SV=1 | [more] |
| A0A6J1DSQ0 | 5.1e-20 | 37.17 | uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
| A0A6J1DX74 | 6.2e-18 | 38.66 | uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 G... | [more] |
| A0A0A0KUT0 | 6.9e-17 | 35.08 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G562290 PE=4 SV=1 | [more] |
| A0A6J1DS87 | 1.2e-16 | 34.03 | uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG6579344.1 | 7.0e-40 | 55.56 | hypothetical protein SDJN03_23792, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAE8650729.1 | 7.0e-40 | 58.85 | hypothetical protein Csa_023412 [Cucumis sativus] | [more] |
| KAG6579352.1 | 2.7e-39 | 56.57 | hypothetical protein SDJN03_23800, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6579345.1 | 1.5e-37 | 56.57 | hypothetical protein SDJN03_23793, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022157182.1 | 1.0e-19 | 37.17 | uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
