PI0025586 (gene) Melon (PI 482460) v1

Overview
NamePI0025586
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionGag/pol protein
Locationchr06: 19614341 .. 19614595 (+)
RNA-Seq ExpressionPI0025586
SyntenyPI0025586
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGGGGAAACAAGTGGAAGAAAATGTTGCTACCACTAAGAAAAAGTTTATAAAAGGATCGTCCTTTAAAACTAAAGTTGGGCCTTCACAAATGAAAAATAAGGGAAAGGGGAAGACTCCCAAGAATGGTAAGGGAAAGAAAGTTGCGAAAGGTAAATGTTACCATTGCAACCAAAACGGGCATTGGTTAAGCAATTGCCCGAAATACCTTACTGAGAAGAAAGCTGAGAAGGAAGCACAAGGAAACTAG

mRNA sequence

ATGGGTATGGGGAAACAAGTGGAAGAAAATGTTGCTACCACTAAGAAAAAGTTTATAAAAGGATCGTCCTTTAAAACTAAAGTTGGGCCTTCACAAATGAAAAATAAGGGAAAGGGGAAGACTCCCAAGAATGGTAAGGGAAAGAAAGTTGCGAAAGGTAAATGTTACCATTGCAACCAAAACGGGCATTGGTTAAGCAATTGCCCGAAATACCTTACTGAGAAGAAAGCTGAGAAGGAAGCACAAGGAAACTAG

Coding sequence (CDS)

ATGGGTATGGGGAAACAAGTGGAAGAAAATGTTGCTACCACTAAGAAAAAGTTTATAAAAGGATCGTCCTTTAAAACTAAAGTTGGGCCTTCACAAATGAAAAATAAGGGAAAGGGGAAGACTCCCAAGAATGGTAAGGGAAAGAAAGTTGCGAAAGGTAAATGTTACCATTGCAACCAAAACGGGCATTGGTTAAGCAATTGCCCGAAATACCTTACTGAGAAGAAAGCTGAGAAGGAAGCACAAGGAAACTAG

Protein sequence

MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQNGHWLSNCPKYLTEKKAEKEAQGN
Homology
BLAST of PI0025586 vs. ExPASy TrEMBL
Match: A0A5D3E1U5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001090 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.6e-29
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 0

Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE N+ATT+K+ + GSS KT+VGPSQ+K KGKGKTPKN KGKKVAKGKCYHCN+
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  NGHWLSNCPKYLTEKKAEKEAQG 84
           +GHWL NCP+YL EKKAEKEAQG
Sbjct: 131 DGHWLRNCPEYLAEKKAEKEAQG 153

BLAST of PI0025586 vs. ExPASy TrEMBL
Match: A0A5A7T0L9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00290 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.7e-29
Identity = 64/83 (77.11%), Postives = 72/83 (86.75%), Query Frame = 0

Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE N+AT +K+ + GSS KT+VGPSQ+K KGKGKTPKN KGKKVAKGKCYHCN+
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  NGHWLSNCPKYLTEKKAEKEAQG 84
            GHWL NCPKYL EKKAEKEAQG
Sbjct: 131 EGHWLRNCPKYLAEKKAEKEAQG 153

BLAST of PI0025586 vs. ExPASy TrEMBL
Match: A0A5A7TUI5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00480 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.0e-27
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 0

Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE NVATT+K+ ++GSS KT+VGPSQ+K K KGK PKN KGKKVAKGKCYHCN+
Sbjct: 34  MGKGKEVEANVATTEKELVRGSSSKTRVGPSQIKKKRKGKNPKNSKGKKVAKGKCYHCNE 93

Query: 61  NGHWLSNCPKYLTEKKAEKEAQG 84
           + HWL NC KYL EKKAEKEAQG
Sbjct: 94  DRHWLKNCLKYLAEKKAEKEAQG 116

BLAST of PI0025586 vs. ExPASy TrEMBL
Match: A0A5D3BYQ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00100 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.7e-26
Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = 0

Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE NV TT+K+ + GSS KT+VG   MK K KGKTPKN +GKKVAKGKCYHCN+
Sbjct: 103 MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNE 162

Query: 61  NGHWLSNCPKYLTEKKAEKEAQGN 85
           +GHWL NCPKYLTEKKA+KEAQ N
Sbjct: 163 DGHWLRNCPKYLTEKKADKEAQRN 186

BLAST of PI0025586 vs. ExPASy TrEMBL
Match: A0A5A7TXW7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G00290 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.7e-26
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           M   K++E NVA T+K+ ++GSS KT+VGPS MKNK KGKTP N KGK VAKGKCYHCN+
Sbjct: 150 MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 209

Query: 61  NGHWLSNCPKYLTEKKAEKEAQGN 85
           +GHWL NCPKYL EKKAEKEAQ N
Sbjct: 210 DGHWLRNCPKYLAEKKAEKEAQEN 233

BLAST of PI0025586 vs. NCBI nr
Match: TYK29862.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 5.3e-29
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 0

Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE N+ATT+K+ + GSS KT+VGPSQ+K KGKGKTPKN KGKKVAKGKCYHCN+
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  NGHWLSNCPKYLTEKKAEKEAQG 84
           +GHWL NCP+YL EKKAEKEAQG
Sbjct: 131 DGHWLRNCPEYLAEKKAEKEAQG 153

BLAST of PI0025586 vs. NCBI nr
Match: KAA0035756.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-28
Identity = 64/83 (77.11%), Postives = 72/83 (86.75%), Query Frame = 0

Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE N+AT +K+ + GSS KT+VGPSQ+K KGKGKTPKN KGKKVAKGKCYHCN+
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  NGHWLSNCPKYLTEKKAEKEAQG 84
            GHWL NCPKYL EKKAEKEAQG
Sbjct: 131 EGHWLRNCPKYLAEKKAEKEAQG 153

BLAST of PI0025586 vs. NCBI nr
Match: KAA0045181.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27371.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.4e-26
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 0

Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE NVATT+K+ ++GSS KT+VGPSQ+K K KGK PKN KGKKVAKGKCYHCN+
Sbjct: 34  MGKGKEVEANVATTEKELVRGSSSKTRVGPSQIKKKRKGKNPKNSKGKKVAKGKCYHCNE 93

Query: 61  NGHWLSNCPKYLTEKKAEKEAQG 84
           + HWL NC KYL EKKAEKEAQG
Sbjct: 94  DRHWLKNCLKYLAEKKAEKEAQG 116

BLAST of PI0025586 vs. NCBI nr
Match: TYK04285.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 5.5e-26
Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = 0

Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE NV TT+K+ + GSS KT+VG   MK K KGKTPKN +GKKVAKGKCYHCN+
Sbjct: 103 MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNE 162

Query: 61  NGHWLSNCPKYLTEKKAEKEAQGN 85
           +GHWL NCPKYLTEKKA+KEAQ N
Sbjct: 163 DGHWLRNCPKYLTEKKADKEAQRN 186

BLAST of PI0025586 vs. NCBI nr
Match: KAA0046201.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14168.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           M   K++E NVA T+K+ ++GSS KT+VGPS MKNK KGKTP N KGK VAKGKCYHCN+
Sbjct: 150 MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 209

Query: 61  NGHWLSNCPKYLTEKKAEKEAQGN 85
           +GHWL NCPKYL EKKAEKEAQ N
Sbjct: 210 DGHWLRNCPKYLAEKKAEKEAQEN 233

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E1U52.6e-2977.11Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G0010... [more]
A0A5A7T0L95.7e-2977.11Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G0029... [more]
A0A5A7TUI57.0e-2774.70Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G0048... [more]
A0A5D3BYQ22.7e-2672.62Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G0010... [more]
A0A5A7TXW77.7e-2671.43Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G0029... [more]
Match NameE-valueIdentityDescription
TYK29862.15.3e-2977.11gag/pol protein [Cucumis melo var. makuwa][more]
KAA0035756.11.2e-2877.11gag/pol protein [Cucumis melo var. makuwa][more]
KAA0045181.11.4e-2674.70gag/pol protein [Cucumis melo var. makuwa] >TYK27371.1 gag/pol protein [Cucumis ... [more]
TYK04285.15.5e-2672.62gag/pol protein [Cucumis melo var. makuwa][more]
KAA0046201.11.6e-2571.43gag/pol protein [Cucumis melo var. makuwa] >TYK14168.1 gag/pol protein [Cucumis ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 54..70
e-value: 0.0038
score: 26.2
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 53..70
e-value: 8.7E-6
score: 25.6
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 54..70
score: 9.48789
NoneNo IPR availableGENE3D4.10.60.10coord: 28..82
e-value: 7.4E-9
score: 37.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 36..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0025586.1PI0025586.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding