PI0025586 (gene) Melon (PI 482460) v1

Overview


Name	PI0025586
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr06: 19614341 .. 19614595 (+)
RNA-Seq Expression	PI0025586
Synteny	PI0025586

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATGGGGAAACAAGTGGAAGAAAATGTTGCTACCACTAAGAAAAAGTTTATAAAAGGATCGTCCTTTAAAACTAAAGTTGGGCCTTCACAAATGAAAAATAAGGGAAAGGGGAAGACTCCCAAGAATGGTAAGGGAAAGAAAGTTGCGAAAGGTAAATGTTACCATTGCAACCAAAACGGGCATTGGTTAAGCAATTGCCCGAAATACCTTACTGAGAAGAAAGCTGAGAAGGAAGCACAAGGAAACTAG

mRNA sequence

ATGGGTATGGGGAAACAAGTGGAAGAAAATGTTGCTACCACTAAGAAAAAGTTTATAAAAGGATCGTCCTTTAAAACTAAAGTTGGGCCTTCACAAATGAAAAATAAGGGAAAGGGGAAGACTCCCAAGAATGGTAAGGGAAAGAAAGTTGCGAAAGGTAAATGTTACCATTGCAACCAAAACGGGCATTGGTTAAGCAATTGCCCGAAATACCTTACTGAGAAGAAAGCTGAGAAGGAAGCACAAGGAAACTAG

Coding sequence (CDS)

ATGGGTATGGGGAAACAAGTGGAAGAAAATGTTGCTACCACTAAGAAAAAGTTTATAAAAGGATCGTCCTTTAAAACTAAAGTTGGGCCTTCACAAATGAAAAATAAGGGAAAGGGGAAGACTCCCAAGAATGGTAAGGGAAAGAAAGTTGCGAAAGGTAAATGTTACCATTGCAACCAAAACGGGCATTGGTTAAGCAATTGCCCGAAATACCTTACTGAGAAGAAAGCTGAGAAGGAAGCACAAGGAAACTAG

Protein sequence

MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQNGHWLSNCPKYLTEKKAEKEAQGN

Homology

[Close]

BLAST of PI0025586 vs. ExPASy TrEMBL
Match: A0A5D3E1U5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001090 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.6e-29
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE N+ATT+K+ + GSS KT+VGPSQ+K KGKGKTPKN KGKKVAKGKCYHCN+
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  NGHWLSNCPKYLTEKKAEKEAQG 84
           +GHWL NCP+YL EKKAEKEAQG
Sbjct: 131 DGHWLRNCPEYLAEKKAEKEAQG 153

[Close]

BLAST of PI0025586 vs. ExPASy TrEMBL
Match: A0A5A7T0L9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00290 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.7e-29
Identity = 64/83 (77.11%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE N+AT +K+ + GSS KT+VGPSQ+K KGKGKTPKN KGKKVAKGKCYHCN+
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  NGHWLSNCPKYLTEKKAEKEAQG 84
            GHWL NCPKYL EKKAEKEAQG
Sbjct: 131 EGHWLRNCPKYLAEKKAEKEAQG 153

[Close]

BLAST of PI0025586 vs. ExPASy TrEMBL
Match: A0A5A7TUI5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00480 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.0e-27
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE NVATT+K+ ++GSS KT+VGPSQ+K K KGK PKN KGKKVAKGKCYHCN+
Sbjct: 34  MGKGKEVEANVATTEKELVRGSSSKTRVGPSQIKKKRKGKNPKNSKGKKVAKGKCYHCNE 93

Query: 61  NGHWLSNCPKYLTEKKAEKEAQG 84
           + HWL NC KYL EKKAEKEAQG
Sbjct: 94  DRHWLKNCLKYLAEKKAEKEAQG 116

[Close]

BLAST of PI0025586 vs. ExPASy TrEMBL
Match: A0A5D3BYQ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00100 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.7e-26
Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE NV TT+K+ + GSS KT+VG   MK K KGKTPKN +GKKVAKGKCYHCN+
Sbjct: 103 MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNE 162

Query: 61  NGHWLSNCPKYLTEKKAEKEAQGN 85
           +GHWL NCPKYLTEKKA+KEAQ N
Sbjct: 163 DGHWLRNCPKYLTEKKADKEAQRN 186

[Close]

BLAST of PI0025586 vs. ExPASy TrEMBL
Match: A0A5A7TXW7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G00290 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.7e-26
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           M   K++E NVA T+K+ ++GSS KT+VGPS MKNK KGKTP N KGK VAKGKCYHCN+
Sbjct: 150 MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 209

Query: 61  NGHWLSNCPKYLTEKKAEKEAQGN 85
           +GHWL NCPKYL EKKAEKEAQ N
Sbjct: 210 DGHWLRNCPKYLAEKKAEKEAQEN 233

[Close]

BLAST of PI0025586 vs. NCBI nr
Match: TYK29862.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 5.3e-29
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE N+ATT+K+ + GSS KT+VGPSQ+K KGKGKTPKN KGKKVAKGKCYHCN+
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  NGHWLSNCPKYLTEKKAEKEAQG 84
           +GHWL NCP+YL EKKAEKEAQG
Sbjct: 131 DGHWLRNCPEYLAEKKAEKEAQG 153

[Close]

BLAST of PI0025586 vs. NCBI nr
Match: KAA0035756.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-28
Identity = 64/83 (77.11%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE N+AT +K+ + GSS KT+VGPSQ+K KGKGKTPKN KGKKVAKGKCYHCN+
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  NGHWLSNCPKYLTEKKAEKEAQG 84
            GHWL NCPKYL EKKAEKEAQG
Sbjct: 131 EGHWLRNCPKYLAEKKAEKEAQG 153

[Close]

BLAST of PI0025586 vs. NCBI nr
Match: KAA0045181.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27371.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.4e-26
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE NVATT+K+ ++GSS KT+VGPSQ+K K KGK PKN KGKKVAKGKCYHCN+
Sbjct: 34  MGKGKEVEANVATTEKELVRGSSSKTRVGPSQIKKKRKGKNPKNSKGKKVAKGKCYHCNE 93

Query: 61  NGHWLSNCPKYLTEKKAEKEAQG 84
           + HWL NC KYL EKKAEKEAQG
Sbjct: 94  DRHWLKNCLKYLAEKKAEKEAQG 116

[Close]

BLAST of PI0025586 vs. NCBI nr
Match: TYK04285.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 5.5e-26
Identity = 61/84 (72.62%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           MG GK+VE NV TT+K+ + GSS KT+VG   MK K KGKTPKN +GKKVAKGKCYHCN+
Sbjct: 103 MGKGKEVETNVGTTEKELVGGSSSKTRVGTLNMKKKRKGKTPKNSEGKKVAKGKCYHCNE 162

Query: 61  NGHWLSNCPKYLTEKKAEKEAQGN 85
           +GHWL NCPKYLTEKKA+KEAQ N
Sbjct: 163 DGHWLRNCPKYLTEKKADKEAQRN 186

[Close]

BLAST of PI0025586 vs. NCBI nr
Match: KAA0046201.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14168.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 1   MGMGKQVEENVATTKKKFIKGSSFKTKVGPSQMKNKGKGKTPKNGKGKKVAKGKCYHCNQ 60
           M   K++E NVA T+K+ ++GSS KT+VGPS MKNK KGKTP N KGK VAKGKCYHCN+
Sbjct: 150 MSKDKEMESNVAITEKELVRGSSSKTRVGPSLMKNKRKGKTPMNSKGKNVAKGKCYHCNE 209

Query: 61  NGHWLSNCPKYLTEKKAEKEAQGN 85
           +GHWL NCPKYL EKKAEKEAQ N
Sbjct: 210 DGHWLRNCPKYLAEKKAEKEAQEN 233

The following BLAST results are available for this feature:

BLAST of PI0025586 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025586 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1U5	2.6e-29	77.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G0010...	[more]
A0A5A7T0L9	5.7e-29	77.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G0029...	[more]
A0A5A7TUI5	7.0e-27	74.70	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G0048...	[more]
A0A5D3BYQ2	2.7e-26	72.62	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G0010...	[more]
A0A5A7TXW7	7.7e-26	71.43	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G0029...	[more]

BLAST of PI0025586 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29862.1	5.3e-29	77.11	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035756.1	1.2e-28	77.11	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0045181.1	1.4e-26	74.70	gag/pol protein [Cucumis melo var. makuwa] >TYK27371.1 gag/pol protein [Cucumis ...	[more]
TYK04285.1	5.5e-26	72.62	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0046201.1	1.6e-25	71.43	gag/pol protein [Cucumis melo var. makuwa] >TYK14168.1 gag/pol protein [Cucumis ...	[more]

BLAST of PI0025586 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 54..70 e-value: 0.0038 score: 26.2
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 53..70 e-value: 8.7E-6 score: 25.6
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 54..70 score: 9.48789
None	No IPR available	GENE3D	4.10.60.10		coord: 28..82 e-value: 7.4E-9 score: 37.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 36..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025586.1	PI0025586.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding