PI0025460 (gene) Melon (PI 482460) v1

Overview


Name	PI0025460
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Histidine-rich glycoprotein-like
Location	chr05: 13284824 .. 13286235 (-)
RNA-Seq Expression	PI0025460
Synteny	PI0025460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTCATATATGCAAGTTAATTTGACTTGGGTTTTGAATTTGGGGTGAAATTTGGAATAAAATTTGTGATACGACCAAATTTTAATTTAATTTGGGGATAAAATCTAAATTTTGAATGATTTAAAGATTTTAATTATCTCAATTATGAAATTTAAGATTTATCCCCAAATAAAATCTTTTAAGATAATAGAAGATAATTGGATTTGTTTTATTAAAAAAAAAAAGATTTGATACGATTCCAAATCCTATTAGGAATTAGACTTATTGGTCTTATAAATAGATCCACCTCTCAATCATTCTTTTCTCATCTAGTAGAAGAAAGCAAACCTACAAGGGAAGGTAAAAAACTTCTCTTTTTTTCTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTGTTTCTTCTTTCTTTCTTTTTTGTTCTTTCTTTGTTAATTTCGTTTTTCTTTTCTTTCAACTTTCTGCTTATTTTTTTTCTTCTTTTTTTGAAGATGATGACCTTCTTAGTTGCATTTTGGAAAGGATAACCTTCTCAACTACATTTTAGAGGGTGCGGAGTGGAGCTGCACCATCGTCATCATCTTGGAGAGGCAGAGTTGCACCATCGTCATCATCTTGGAGAGGACCATCATTTTGGAGAGGCAGAGTTGCACCACCATCATTTTGGAGAAGCGGAGCTGCACCACCATTTTCTTGGAGAGGCGGAGCTGCACCACCATCTTCTTGGAGAGGTGAGTTGCACCATCATCATTTTGGAGAGACGGGCTACACCACCATCATTTTAGAAAGGTGGAGCTGCACCATCACTTTTTTGGAGAGGGGAGGTGCACCACCATCATTTTGGAGACGCAAAGCTATACTACCACCTTGGAGGGGCGAGTTGCACCATCATTATTTTGGAGAAGTGGGCGCACCATCATCATTTTGGAGAGGCGGAGCTGCATCACCATCTTCTTGGAGAGGCGAGTTGCACCACCATCATTTTGGAGAGGCGAGCTGCACCACCATCATTTTGGAGAAGTAGAAGCTGCACCACCACCATCTTGGAGAGACGGAGCTGCACCCCATCATCATTTTGGAGAGGTGAAGGCAGAGCTGCACCATTTTCATCATCTTGGAGAGGTAGAGCTACACCACAACCATTTTGGAGAGGCGGGCTGCACCACCATCATTTTGGAGAGGCATAGCTATATTACCACCTTGGAGGGGCGATTTGGACCACCATCAGTTTGGAGAGGCGAGACTATACTACCATCTTGGGGGGTGAGTTGCACCACCATCCTCTTGGAAAGGTAGAAGCTGCACCACCACCATCTTGGAGAGACGGAGCTGCACCACCATCATCATTTTGGAGAGGTCAAGGTAGAGTTGCACCATTGTCATCATCTTGGAGAGACAAAGCTGCACCATAA

mRNA sequence

ATGGAGAAGAAAGCAAACCTACAAGGGAAGAGGGTGCGGAGTGGAGCTGCACCATCGTCATCATCTTGGAGAGGCAGAGTTGCACCATCGTCATCATCTTGGAGAGGACCATCATTTTGGAGAGGCAGAGTTGCACCACCATCATTTTGGAGAAGCGGAGCTGCACCACCATTTTCTTGGAGAGGCGGAGCTGCACCACCATCTTCTTGGAGAGAGGGGAGGTGCACCACCATCATTTTGGAGACGCAAAGCTATACTACCACCTTGGAGGGGCGAGTTGCACCATCATTATTTTGGAGAAGTGGGCGCACCATCATCATTTTGGAGAGGCGGAGCTGCATCACCATCTTCTTGGAGAGGCGAGTTGCACCACCATCATTTTGGAGAGGCGAGCTGCACCACCATCATTTTGGAGAAGTAGAAGCTGCACCACCACCATCTTGGAGAGACGGAGCTGCACCCCATCATCATTTTGGAGAGGTGAAGGCAGAGCTGCACCATTTTCATCATCTTGGAGAGCTATATTACCACCTTGGAGGGGCGATTTGGACCACCATCAGTTTGGAGAGGCGAGACTATACTACCATCTTGGGGGGTGAGTTGCACCACCATCCTCTTGGAAAGGTAGAAGCTGCACCACCACCATCTTGGAGAGACGGAGCTGCACCACCATCATCATTTTGGAGAGGTCAAGGTAGAGTTGCACCATTGTCATCATCTTGGAGAGACAAAGCTGCACCATAA

Coding sequence (CDS)

ATGGAGAAGAAAGCAAACCTACAAGGGAAGAGGGTGCGGAGTGGAGCTGCACCATCGTCATCATCTTGGAGAGGCAGAGTTGCACCATCGTCATCATCTTGGAGAGGACCATCATTTTGGAGAGGCAGAGTTGCACCACCATCATTTTGGAGAAGCGGAGCTGCACCACCATTTTCTTGGAGAGGCGGAGCTGCACCACCATCTTCTTGGAGAGAGGGGAGGTGCACCACCATCATTTTGGAGACGCAAAGCTATACTACCACCTTGGAGGGGCGAGTTGCACCATCATTATTTTGGAGAAGTGGGCGCACCATCATCATTTTGGAGAGGCGGAGCTGCATCACCATCTTCTTGGAGAGGCGAGTTGCACCACCATCATTTTGGAGAGGCGAGCTGCACCACCATCATTTTGGAGAAGTAGAAGCTGCACCACCACCATCTTGGAGAGACGGAGCTGCACCCCATCATCATTTTGGAGAGGTGAAGGCAGAGCTGCACCATTTTCATCATCTTGGAGAGCTATATTACCACCTTGGAGGGGCGATTTGGACCACCATCAGTTTGGAGAGGCGAGACTATACTACCATCTTGGGGGGTGAGTTGCACCACCATCCTCTTGGAAAGGTAGAAGCTGCACCACCACCATCTTGGAGAGACGGAGCTGCACCACCATCATCATTTTGGAGAGGTCAAGGTAGAGTTGCACCATTGTCATCATCTTGGAGAGACAAAGCTGCACCATAA

Protein sequence

MEKKANLQGKRVRSGAAPSSSSWRGRVAPSSSSWRGPSFWRGRVAPPSFWRSGAAPPFSWRGGAAPPSSWREGRCTTIILETQSYTTTLEGRVAPSLFWRSGRTIIILERRSCITIFLERRVAPPSFWRGELHHHHFGEVEAAPPPSWRDGAAPHHHFGEVKAELHHFHHLGELYYHLGGAIWTTISLERRDYTTILGGELHHHPLGKVEAAPPPSWRDGAAPPSSFWRGQGRVAPLSSSWRDKAAP

Homology

[Close]

BLAST of PI0025460 vs. ExPASy TrEMBL
Match: A0A5A7VL48 (Histidine-rich glycoprotein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002540 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-04
Identity = 33/80 (41.25%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 133 HHHHFGEVEAAPPPSWRDGAAPHHHFGEVKAELHHFHHLGEL-YYHLGGAIWTTISLERR 192
           HHHH GE + A    +       +H GE KAELHH HHLGE  +YH      +   L R 
Sbjct: 366 HHHHLGEAKEAEVKLYH-----RYHIGEKKAELHHHHHLGEAEFYHHRHLRKSEAKLHRH 425

Query: 193 DYTTILGGEL-HHHPLGKVE 211
            +   +  EL HHH LG+ E
Sbjct: 426 PHHGEIEAELYHHHHLGEAE 440

[Close]

BLAST of PI0025460 vs. NCBI nr
Match: KAA0067176.1 (histidine-rich glycoprotein-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 6.0e-04
Identity = 33/80 (41.25%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 133 HHHHFGEVEAAPPPSWRDGAAPHHHFGEVKAELHHFHHLGEL-YYHLGGAIWTTISLERR 192
           HHHH GE + A    +       +H GE KAELHH HHLGE  +YH      +   L R 
Sbjct: 366 HHHHLGEAKEAEVKLYH-----RYHIGEKKAELHHHHHLGEAEFYHHRHLRKSEAKLHRH 425

Query: 193 DYTTILGGEL-HHHPLGKVE 211
            +   +  EL HHH LG+ E
Sbjct: 426 PHHGEIEAELYHHHHLGEAE 440

The following BLAST results are available for this feature:

BLAST of PI0025460 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VL48	2.9e-04	41.25	Histidine-rich glycoprotein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

BLAST of PI0025460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067176.1	6.0e-04	41.25	histidine-rich glycoprotein-like [Cucumis melo var. makuwa]	[more]

BLAST of PI0025460 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025460.1	PI0025460.1	mRNA