Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGCAATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATTGTCCGGCATACGGATTGAATCCCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTCAAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGAAATTTTACGAGTTTATTCTAG
mRNA sequence
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGCAATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATTGTCCGGCATACGGATTGAATCCCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTCAAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGAAATTTTACGAGTTTATTCTAG
Coding sequence (CDS)
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGCAATGGATTTGGGGTTTACTACGGTAACCCGATCTAAAGCAAGATTGTCCGGCATACGGATTGAATCCCCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCTGCCTCTCCTTTGTCAAATTTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACCAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACTTATTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTCAAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGAAATTTTACGAGTTTATTCTAG
Protein sequence
MSSVRGRGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRNFTSLF
Homology
BLAST of PI0025433 vs. ExPASy TrEMBL
Match:
A0A5A7TM80 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00220 PE=4 SV=1)
HSP 1 Score: 244.6 bits (623), Expect = 3.0e-61
Identity = 131/169 (77.51%), Postives = 144/169 (85.21%), Query Frame = 0
Query: 1 MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIE 60
MSS +G RGR +STSSKG+RP SS N APSP+SADQYAMDLGFTTVTR +R GI I
Sbjct: 1 MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIG 60
Query: 61 SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
SPTESSTPPRPS NL+RPS G+ QMRPPASP SN ESSTPPTTYSQAV P+KRF+PRPEI
Sbjct: 61 SPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPEI 120
Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRNF 168
K+YFQK +V+YDPIIE EYQSLT +ETVSKIFPE FNFL EDLRKTR F
Sbjct: 121 KSYFQKPIVVYDPIIELEYQSLTSEETVSKIFPEDFNFLLEDLRKTRKF 169
BLAST of PI0025433 vs. ExPASy TrEMBL
Match:
E5GCE6 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 241.9 bits (616), Expect = 2.0e-60
Identity = 127/167 (76.05%), Postives = 143/167 (85.63%), Query Frame = 0
Query: 1 MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIE 60
MSS +G RGR +STSSKG RPSSS N PSPMSA QY MDLGFT VTRS++RLS I I
Sbjct: 1 MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60
Query: 61 SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
SPTESSTPPRPS NL+RPSGG+ QMRPPASP SN ESSTPPTTYSQAV +KRF+PRPEI
Sbjct: 61 SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120
Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTR 166
K+YFQK +V+YDPIIEPEYQSLT++E VSKIFP+ FNFLPEDL+K +
Sbjct: 121 KSYFQKSIVVYDPIIEPEYQSLTLEEMVSKIFPKDFNFLPEDLKKKK 167
BLAST of PI0025433 vs. ExPASy TrEMBL
Match:
A0A5D3E4J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00750 PE=4 SV=1)
HSP 1 Score: 238.0 bits (606), Expect = 2.8e-59
Identity = 126/165 (76.36%), Postives = 142/165 (86.06%), Query Frame = 0
Query: 1 MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIE 60
MSS +G RGR +STSSKG+R SSS N APSPMSADQYAMDLGFT VTRS++RLSGI I
Sbjct: 1 MSSKKGNARGRTNSTSSKGNRLSSSSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGIG 60
Query: 61 SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
PTESSTPPRPSANL+RP G + QM+PPASP SN +SSTPPTTYSQAV P+KRF+PRP+I
Sbjct: 61 FPTESSTPPRPSANLIRPFGRVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPKI 120
Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRK 164
K YFQK +V+YDP IE EYQSLT++E VSKIFPE FNFLPEDLRK
Sbjct: 121 KFYFQKSIVVYDPTIELEYQSLTLEEAVSKIFPEDFNFLPEDLRK 165
BLAST of PI0025433 vs. ExPASy TrEMBL
Match:
A0A5D3BM67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00180 PE=4 SV=1)
HSP 1 Score: 225.3 bits (573), Expect = 1.9e-55
Identity = 112/141 (79.43%), Postives = 125/141 (88.65%), Query Frame = 0
Query: 31 MSADQYAMDLGFTTVTRSKARLSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPL 90
MSADQYAMDLGFTTVTRS++R S IRIES TESSTPPRPSANL+RP GG QMRPPASP
Sbjct: 1 MSADQYAMDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPS 60
Query: 91 SNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIF 150
SN ESSTPPTTYSQ V P+KRF+PRPEIK+YFQK +V+YD IIEPEYQS+T+++TVSKIF
Sbjct: 61 SNRESSTPPTTYSQTVTPDKRFVPRPEIKSYFQKSIVVYDLIIEPEYQSITLEKTVSKIF 120
Query: 151 PEGFNFLPEDLRKTRNFTSLF 172
+ FN LPEDLRKTRNF SLF
Sbjct: 121 LDNFNLLPEDLRKTRNFMSLF 141
BLAST of PI0025433 vs. ExPASy TrEMBL
Match:
A0A5D3DHH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G001370 PE=4 SV=1)
HSP 1 Score: 201.8 bits (512), Expect = 2.3e-48
Identity = 115/163 (70.55%), Postives = 134/163 (82.21%), Query Frame = 0
Query: 1 MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIE 60
MSS +G RGR +STSSKG+RPSSS N PS +SA QYA+DLGFT VTRS++RL GI I
Sbjct: 1 MSSEKGSARGRTNSTSSKGNRPSSSSNSVPSSISAYQYAIDLGFTMVTRSRSRLFGIWIG 60
Query: 61 SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESST-PPTTYSQAVAPEKRFIPRPE 120
S TESSTP RPSANL+RPSG + QMR ASP SN+ESST PPTTYSQAV P+KRF+PRPE
Sbjct: 61 SLTESSTPLRPSANLIRPSGEVIQMRSLASPSSNMESSTPPPTTYSQAVTPDKRFVPRPE 120
Query: 121 IKTYFQKQVVIYDPIIEPEYQSLTIDE-TVSKIFPEGFNFLPE 160
KTYF+K + +Y P IE EYQ+LT++E TVSKIFP+GFNFLPE
Sbjct: 121 FKTYFKKSIEVYYPTIELEYQNLTLEESTVSKIFPKGFNFLPE 163
BLAST of PI0025433 vs. NCBI nr
Match:
KAA0043136.1 (putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative Retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 244.6 bits (623), Expect = 6.3e-61
Identity = 131/169 (77.51%), Postives = 144/169 (85.21%), Query Frame = 0
Query: 1 MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIE 60
MSS +G RGR +STSSKG+RP SS N APSP+SADQYAMDLGFTTVTR +R GI I
Sbjct: 1 MSSDKGSARGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIG 60
Query: 61 SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
SPTESSTPPRPS NL+RPS G+ QMRPPASP SN ESSTPPTTYSQAV P+KRF+PRPEI
Sbjct: 61 SPTESSTPPRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPEI 120
Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRNF 168
K+YFQK +V+YDPIIE EYQSLT +ETVSKIFPE FNFL EDLRKTR F
Sbjct: 121 KSYFQKPIVVYDPIIELEYQSLTSEETVSKIFPEDFNFLLEDLRKTRKF 169
BLAST of PI0025433 vs. NCBI nr
Match:
ADN34145.1 (hypothetical protein [Cucumis melo subsp. melo])
HSP 1 Score: 241.9 bits (616), Expect = 4.1e-60
Identity = 127/167 (76.05%), Postives = 143/167 (85.63%), Query Frame = 0
Query: 1 MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIE 60
MSS +G RGR +STSSKG RPSSS N PSPMSA QY MDLGFT VTRS++RLS I I
Sbjct: 1 MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60
Query: 61 SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
SPTESSTPPRPS NL+RPSGG+ QMRPPASP SN ESSTPPTTYSQAV +KRF+PRPEI
Sbjct: 61 SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120
Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTR 166
K+YFQK +V+YDPIIEPEYQSLT++E VSKIFP+ FNFLPEDL+K +
Sbjct: 121 KSYFQKSIVVYDPIIEPEYQSLTLEEMVSKIFPKDFNFLPEDLKKKK 167
BLAST of PI0025433 vs. NCBI nr
Match:
KAA0026217.1 (hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK30739.1 hypothetical protein E5676_scaffold343G00750 [Cucumis melo var. makuwa])
HSP 1 Score: 238.0 bits (606), Expect = 5.9e-59
Identity = 126/165 (76.36%), Postives = 142/165 (86.06%), Query Frame = 0
Query: 1 MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIE 60
MSS +G RGR +STSSKG+R SSS N APSPMSADQYAMDLGFT VTRS++RLSGI I
Sbjct: 1 MSSKKGNARGRTNSTSSKGNRLSSSSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGIG 60
Query: 61 SPTESSTPPRPSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEI 120
PTESSTPPRPSANL+RP G + QM+PPASP SN +SSTPPTTYSQAV P+KRF+PRP+I
Sbjct: 61 FPTESSTPPRPSANLIRPFGRVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPKI 120
Query: 121 KTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRK 164
K YFQK +V+YDP IE EYQSLT++E VSKIFPE FNFLPEDLRK
Sbjct: 121 KFYFQKSIVVYDPTIELEYQSLTLEEAVSKIFPEDFNFLPEDLRK 165
BLAST of PI0025433 vs. NCBI nr
Match:
KAE8646253.1 (hypothetical protein Csa_023844, partial [Cucumis sativus])
HSP 1 Score: 228.8 bits (582), Expect = 3.6e-56
Identity = 117/153 (76.47%), Postives = 135/153 (88.24%), Query Frame = 0
Query: 9 RVSSTSSKGSRPSSSQNPAPSPMSADQYAMDLGFTTVTRSKARLSGIRIESPTESSTPPR 68
R +STSS+G+RPSSS N APSPMSADQYAMDLGFTTVTRS+AR S I+I SPT+SSTPPR
Sbjct: 1 RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR 60
Query: 69 PSANLVRPSGGITQMRPPASPLSNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVI 128
SANL+RPS + QMRP ASPLSN ESSTPPTTYSQ + P+KRF+PR EIK+YFQK V++
Sbjct: 61 TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIV 120
Query: 129 YDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDL 162
YD IIEPEYQSLT++ETVSKIFP+ FNFLP+DL
Sbjct: 121 YDSIIEPEYQSLTLEETVSKIFPDNFNFLPDDL 153
BLAST of PI0025433 vs. NCBI nr
Match:
KAA0066421.1 (hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK00863.1 hypothetical protein E5676_scaffold602G00180 [Cucumis melo var. makuwa])
HSP 1 Score: 225.3 bits (573), Expect = 3.9e-55
Identity = 112/141 (79.43%), Postives = 125/141 (88.65%), Query Frame = 0
Query: 31 MSADQYAMDLGFTTVTRSKARLSGIRIESPTESSTPPRPSANLVRPSGGITQMRPPASPL 90
MSADQYAMDLGFTTVTRS++R S IRIES TESSTPPRPSANL+RP GG QMRPPASP
Sbjct: 1 MSADQYAMDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPS 60
Query: 91 SNLESSTPPTTYSQAVAPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIF 150
SN ESSTPPTTYSQ V P+KRF+PRPEIK+YFQK +V+YD IIEPEYQS+T+++TVSKIF
Sbjct: 61 SNRESSTPPTTYSQTVTPDKRFVPRPEIKSYFQKSIVVYDLIIEPEYQSITLEKTVSKIF 120
Query: 151 PEGFNFLPEDLRKTRNFTSLF 172
+ FN LPEDLRKTRNF SLF
Sbjct: 121 LDNFNLLPEDLRKTRNFMSLF 141
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TM80 | 3.0e-61 | 77.51 | Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
| E5GCE6 | 2.0e-60 | 76.05 | Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
| A0A5D3E4J4 | 2.8e-59 | 76.36 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3BM67 | 1.9e-55 | 79.43 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3DHH1 | 2.3e-48 | 70.55 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0043136.1 | 6.3e-61 | 77.51 | putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative... | [more] |
| ADN34145.1 | 4.1e-60 | 76.05 | hypothetical protein [Cucumis melo subsp. melo] | [more] |
| KAA0026217.1 | 5.9e-59 | 76.36 | hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK3073... | [more] |
| KAE8646253.1 | 3.6e-56 | 76.47 | hypothetical protein Csa_023844, partial [Cucumis sativus] | [more] |
| KAA0066421.1 | 3.9e-55 | 79.43 | hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK0086... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
