PI0025400 (gene) Melon (PI 482460) v1

Overview
NamePI0025400
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr10: 10956910 .. 10957368 (-)
RNA-Seq ExpressionPI0025400
SyntenyPI0025400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACTACAAGGAAGGCCAAGGCGAGGTAGGCAAGTGGCAGCTAGTGTCCAAGCTACTGGGAGCGCTAATAGAGCACCGAAATCGGATGAAATATCGAGTAATCCTCATGGTGCAACTGAGCAAAACGTAGAAGAAAGTATGTTGAACCGTTTTACTCAAAGAGTAGCAGATCATATTATGCCATCAAACTCTACGTTAGACAAGAGATTTGGCATTGAAAGGTTGAAGGCGTTAAGAGCAACGACCTTCAAAGGAACCATTGATTCGGCCGACACAGAAAAGTGGTTAACCTTGATTGAGAAGTGTTTTGGGGTGATGGAGTGCCTCAAAGAAAAGAAGGTGAAATTAGCAACATTTTTGTTGCAAGAAAGCGCCGAAGATTGGTGGACTCACCACGTAACAAGAGCTGACGAGCCAAGTTTTGTCTCTTGGGAAGAGTTTCGAAAGACGTTCTGA

mRNA sequence

ATGACACTACAAGGAAGGCCAAGGCGAGGTAGGCAAGTGGCAGCTAGTGTCCAAGCTACTGGGAGCGCTAATAGAGCACCGAAATCGGATGAAATATCGAGTAATCCTCATGGTGCAACTGAGCAAAACGTAGAAGAAAGTATGTTGAACCGTTTTACTCAAAGAGTAGCAGATCATATTATGCCATCAAACTCTACGTTAGACAAGAGATTTGGCATTGAAAGGTTGAAGGCGTTAAGAGCAACGACCTTCAAAGGAACCATTGATTCGGCCGACACAGAAAAGTGGTTAACCTTGATTGAGAAGTGTTTTGGGGTGATGGAGTGCCTCAAAGAAAAGAAGGTGAAATTAGCAACATTTTTGTTGCAAGAAAGCGCCGAAGATTGGTGGACTCACCACGTAACAAGAGCTGACGAGCCAAGTTTTGTCTCTTGGGAAGAGTTTCGAAAGACGTTCTGA

Coding sequence (CDS)

ATGACACTACAAGGAAGGCCAAGGCGAGGTAGGCAAGTGGCAGCTAGTGTCCAAGCTACTGGGAGCGCTAATAGAGCACCGAAATCGGATGAAATATCGAGTAATCCTCATGGTGCAACTGAGCAAAACGTAGAAGAAAGTATGTTGAACCGTTTTACTCAAAGAGTAGCAGATCATATTATGCCATCAAACTCTACGTTAGACAAGAGATTTGGCATTGAAAGGTTGAAGGCGTTAAGAGCAACGACCTTCAAAGGAACCATTGATTCGGCCGACACAGAAAAGTGGTTAACCTTGATTGAGAAGTGTTTTGGGGTGATGGAGTGCCTCAAAGAAAAGAAGGTGAAATTAGCAACATTTTTGTTGCAAGAAAGCGCCGAAGATTGGTGGACTCACCACGTAACAAGAGCTGACGAGCCAAGTTTTGTCTCTTGGGAAGAGTTTCGAAAGACGTTCTGA

Protein sequence

MTLQGRPRRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLKEKKVKLATFLLQESAEDWWTHHVTRADEPSFVSWEEFRKTF
Homology
BLAST of PI0025400 vs. ExPASy TrEMBL
Match: A0A5D3DVY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold93G00280 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.0e-28
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 0

Query: 12  QVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRF 71
           QVA +VQ+ GSANRA   DE+SSNPH    QNVEESM NRF +RVADH++P  S ++KR 
Sbjct: 2   QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRL 61

Query: 72  GIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLKEKKVKLATF 121
            IER+KAL ATTF+GTI   + +KWL+L EKCF VM+C KE+KVKLA F
Sbjct: 62  TIERIKALGATTFEGTIGPTNVKKWLSLAEKCFQVMDCPKERKVKLAIF 110

BLAST of PI0025400 vs. ExPASy TrEMBL
Match: A0A5A7UFQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1371G00020 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 69/109 (63.30%), Postives = 83/109 (76.15%), Query Frame = 0

Query: 12  QVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRF 71
           QVA +VQ+ GSANRA   DE+SSNPH    QNVEESM NRF QRVADH++P  S ++KR 
Sbjct: 2   QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRL 61

Query: 72  GIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLKEKKVKLATF 121
            IER+KAL AT F+GTI   + +KWL+L EKCF VM+C KE+KVKLA F
Sbjct: 62  TIERIKALGATAFEGTIGPTNVKKWLSLAEKCFQVMDCPKERKVKLAIF 110

BLAST of PI0025400 vs. ExPASy TrEMBL
Match: A0A5D3BUF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00680 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 74/128 (57.81%), Postives = 93/128 (72.66%), Query Frame = 0

Query: 1   MTLQGRPRRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHI 60
           M  + R R  RQV   V AT SAN+  +S+EIS+NP+   +QN E+SM +RF QR+ DH 
Sbjct: 1   MAPRERVRICRQVTIGVPATESANKVQESNEISNNPYDPIKQNTEKSMFDRFGQRLVDHF 60

Query: 61  MPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLKEKKVKLATF 120
           MP+   +DKRF IERL+AL ATTF+ T + ADT+KWL LIEK FGVME  +E+KVKLATF
Sbjct: 61  MPTPFIVDKRFNIERLRALGATTFEETKNLADTKKWLNLIEKYFGVMEWPEERKVKLATF 120

Query: 121 LLQESAED 129
           LLQ S +D
Sbjct: 121 LLQGSVKD 128

BLAST of PI0025400 vs. ExPASy TrEMBL
Match: A0A5A7TVM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00730 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.7e-27
Identity = 68/107 (63.55%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 8   RRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTL 67
           RRGRQVA SV  T  ANRA  S +ISSNPH +  QNVEESM +RF QR+ DH MP  ST+
Sbjct: 28  RRGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTV 87

Query: 68  DKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLKEKK 115
           DKRFGIERLKAL A TF+G  + AD  K L+L+EKCFGVM+C K+++
Sbjct: 88  DKRFGIERLKALGAMTFEGKTNLADANKCLSLVEKCFGVMKCPKKEE 134

BLAST of PI0025400 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.6e-26
Identity = 73/149 (48.99%), Postives = 93/149 (62.42%), Query Frame = 0

Query: 4   QGRPRRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPS 63
           QGRPR+     AS  A  +A  + +SD  SS PH   E NVEE +L+R  QR+   I  +
Sbjct: 3   QGRPRKHPDAEASNAAREAAMGSGESDAESSRPH--VEGNVEEQLLDRLAQRLILGIRLA 62

Query: 64  NSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLKEKKVKLATFLLQ 123
            S  +K++GIERLKAL ATTF GT +  D E+WLTLIEKCF V  C +++KV+LA FLLQ
Sbjct: 63  QSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLLQ 122

Query: 124 ESAEDWWTHHVTRADEPSFVSWEEFRKTF 153
             AEDWW    +R      + W EF+K F
Sbjct: 123 NGAEDWWHMEESRRRTTGDMIWGEFKKAF 149

BLAST of PI0025400 vs. NCBI nr
Match: TYK27664.1 (uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 2.1e-28
Identity = 69/109 (63.30%), Postives = 84/109 (77.06%), Query Frame = 0

Query: 12  QVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRF 71
           QVA +VQ+ GSANRA   DE+SSNPH    QNVEESM NRF +RVADH++P  S ++KR 
Sbjct: 2   QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRL 61

Query: 72  GIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLKEKKVKLATF 121
            IER+KAL ATTF+GTI   + +KWL+L EKCF VM+C KE+KVKLA F
Sbjct: 62  TIERIKALGATTFEGTIGPTNVKKWLSLAEKCFQVMDCPKERKVKLAIF 110

BLAST of PI0025400 vs. NCBI nr
Match: KAA0054080.1 (hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 3.6e-28
Identity = 69/109 (63.30%), Postives = 83/109 (76.15%), Query Frame = 0

Query: 12  QVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTLDKRF 71
           QVA +VQ+ GSANRA   DE+SSNPH    QNVEESM NRF QRVADH++P  S ++KR 
Sbjct: 2   QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRL 61

Query: 72  GIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLKEKKVKLATF 121
            IER+KAL AT F+GTI   + +KWL+L EKCF VM+C KE+KVKLA F
Sbjct: 62  TIERIKALGATAFEGTIGPTNVKKWLSLAEKCFQVMDCPKERKVKLAIF 110

BLAST of PI0025400 vs. NCBI nr
Match: KAA0039561.1 (hypothetical protein E6C27_scaffold744G00310 [Cucumis melo var. makuwa] >TYK01739.1 hypothetical protein E5676_scaffold775G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-27
Identity = 74/128 (57.81%), Postives = 93/128 (72.66%), Query Frame = 0

Query: 1   MTLQGRPRRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHI 60
           M  + R R  RQV   V AT SAN+  +S+EIS+NP+   +QN E+SM +RF QR+ DH 
Sbjct: 1   MAPRERVRICRQVTIGVPATESANKVQESNEISNNPYDPIKQNTEKSMFDRFGQRLVDHF 60

Query: 61  MPSNSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLKEKKVKLATF 120
           MP+   +DKRF IERL+AL ATTF+ T + ADT+KWL LIEK FGVME  +E+KVKLATF
Sbjct: 61  MPTPFIVDKRFNIERLRALGATTFEETKNLADTKKWLNLIEKYFGVMEWPEERKVKLATF 120

Query: 121 LLQESAED 129
           LLQ S +D
Sbjct: 121 LLQGSVKD 128

BLAST of PI0025400 vs. NCBI nr
Match: KAA0047014.1 (hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK04769.1 hypothetical protein E5676_scaffold68G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-26
Identity = 68/107 (63.55%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 8   RRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPSNSTL 67
           RRGRQVA SV  T  ANRA  S +ISSNPH +  QNVEESM +RF QR+ DH MP  ST+
Sbjct: 28  RRGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTV 87

Query: 68  DKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLKEKK 115
           DKRFGIERLKAL A TF+G  + AD  K L+L+EKCFGVM+C K+++
Sbjct: 88  DKRFGIERLKALGAMTFEGKTNLADANKCLSLVEKCFGVMKCPKKEE 134

BLAST of PI0025400 vs. NCBI nr
Match: KAA0026280.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 3.4e-26
Identity = 73/149 (48.99%), Postives = 93/149 (62.42%), Query Frame = 0

Query: 4   QGRPRRGRQVAASVQATGSANRAPKSDEISSNPHGATEQNVEESMLNRFTQRVADHIMPS 63
           QGRPR+     AS  A  +A  + +SD  SS PH   E NVEE +L+R  QR+   I  +
Sbjct: 3   QGRPRKHPDAEASNAAREAAMGSGESDAESSRPH--VEGNVEEQLLDRLAQRLILGIRLA 62

Query: 64  NSTLDKRFGIERLKALRATTFKGTIDSADTEKWLTLIEKCFGVMECLKEKKVKLATFLLQ 123
            S  +K++GIERLKAL ATTF GT +  D E+WLTLIEKCF V  C +++KV+LA FLLQ
Sbjct: 63  QSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKVTRCSEDRKVELAAFLLQ 122

Query: 124 ESAEDWWTHHVTRADEPSFVSWEEFRKTF 153
             AEDWW    +R      + W EF+K F
Sbjct: 123 NGAEDWWHMEESRRRTTGDMIWGEFKKAF 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DVY71.0e-2863.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UFQ11.8e-2863.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BUF61.1e-2757.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TVM15.7e-2763.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SJ991.6e-2648.99DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
TYK27664.12.1e-2863.30uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa][more]
KAA0054080.13.6e-2863.30hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa][more]
KAA0039561.12.4e-2757.81hypothetical protein E6C27_scaffold744G00310 [Cucumis melo var. makuwa] >TYK0173... [more]
KAA0047014.11.2e-2663.55hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK047... [more]
KAA0026280.13.4e-2648.99DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK21476.1 D... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0025400.1PI0025400.1mRNA