Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACTTCTTCAAGGGCCCCAAAGCACCTATGGACGAAAGAGGAGGAGGCCACCCTCGTTGAATGTCTAGTAGAGTTGGTATCCGTCGGCGGCTGGAGGTCGGACAACGAGACGTTTAGACTCGGTTATCATAGTCATCTACAGAAAATGATGGTTGAACGAATGCCGGGACATAACATACAGACTTCGACCATTGATTGTTGGATAAAGACGCTTAAAAGAACGTTCCAAGCTATAGCTGAAATGCGGGGTCCATCGTGTAGTGAGTTCAGTTGGAACGATGAGCTCAAATGCATATTTGCCGAGAAGGACTTGTATGACAATTGGGTGAAGGTATGTTCTTGATTCTATCTATTACTGTTCGTTTCTAATAGTAAATTGATTAATTAGTTCCTGCAACACTGATACAGAGTCATCCAGCTGCGAAGGGCCTCCTAAACAAATCATTTCCCCATTACGACGACCTATGCTACGTATTTGGAAGAGATTGTGCAACAGAAAGGCGCGCTGAAACCTTCGCCAATGTTGGGTCGAACGTGCCCGAAGGGTACGGAGATTTCCCGTCGACGACGTCAACAACATGGAGATCCCCTCGATGTACATGTAGGGACTAGACATGTCACCTTACGACGTCATGGGCACACGACCCGATCGCTCAGCTGAGGGTAGGACTGGTTCGAGCAGGTCGAAGAGGAAGCATGGAAGCCAGAAATTAGAAACGGCAAAATCATTCGTAATGCGATGGAGTATGCAAATGACCAACTGAAGGCCATTGCAGAATGGCCAAATGTACAACGCCAAGATGCAAGCGCTACACATGCGGAGGTTATTAGGCAGTTGTAG
mRNA sequence
ATGACAACTTCTTCAAGGGCCCCAAAGCACCTATGGACGAAAGAGGAGGAGGCCACCCTCGTTGAATGTCTAGTAGAGTTGGTATCCGTCGGCGGCTGGAGGTCGGACAACGAGACGTTTAGACTCGGTTATCATAGTCATCTACAGAAAATGATGGTTGAACGAATGCCGGGACATAACATACAGACTTCGACCATTGATTGTTGGATAAAGACGCTTAAAAGAACGTTCCAAGCTATAGCTGAAATGCGGGGTCCATCGTGTAGTGAGTTCAGTTGGAACGATGAGCTCAAATGCATATTTGCCGAGAAGGACTTGTATGACAATTGGGTGAAGGTCGAAGAGGAAGCATGGAAGCCAGAAATTAGAAACGGCAAAATCATTCGTAATGCGATGGAGTATGCAAATGACCAACTGAAGGCCATTGCAGAATGGCCAAATGTACAACGCCAAGATGCAAGCGCTACACATGCGGAGGTTATTAGGCAGTTGTAG
Coding sequence (CDS)
ATGACAACTTCTTCAAGGGCCCCAAAGCACCTATGGACGAAAGAGGAGGAGGCCACCCTCGTTGAATGTCTAGTAGAGTTGGTATCCGTCGGCGGCTGGAGGTCGGACAACGAGACGTTTAGACTCGGTTATCATAGTCATCTACAGAAAATGATGGTTGAACGAATGCCGGGACATAACATACAGACTTCGACCATTGATTGTTGGATAAAGACGCTTAAAAGAACGTTCCAAGCTATAGCTGAAATGCGGGGTCCATCGTGTAGTGAGTTCAGTTGGAACGATGAGCTCAAATGCATATTTGCCGAGAAGGACTTGTATGACAATTGGGTGAAGGTCGAAGAGGAAGCATGGAAGCCAGAAATTAGAAACGGCAAAATCATTCGTAATGCGATGGAGTATGCAAATGACCAACTGAAGGCCATTGCAGAATGGCCAAATGTACAACGCCAAGATGCAAGCGCTACACATGCGGAGGTTATTAGGCAGTTGTAG
Protein sequence
MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVKVEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL
Homology
BLAST of PI0025360 vs. ExPASy TrEMBL
Match:
E5GBS5 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 190.3 bits (482), Expect = 6.5e-45
Identity = 97/190 (51.05%), Postives = 122/190 (64.21%), Query Frame = 0
Query: 1 MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
M +SSR KHLW KE++ATLVECLV+LV+ GW SDN TF LGY+S L +MM ++M G N
Sbjct: 1 MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60
Query: 61 IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVK-------- 120
IQ +TID IKT+++TF AI+E+RGPSCS FSWNDEL I EKD++DNW+K
Sbjct: 61 IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 120
Query: 121 ------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDAS 165
+ + I II+NAMEYANDQL I +WP ++ QDAS
Sbjct: 121 FMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDWPILRNQDAS 180
BLAST of PI0025360 vs. ExPASy TrEMBL
Match:
A0A5A7UWW9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00480 PE=4 SV=1)
HSP 1 Score: 186.8 bits (473), Expect = 7.2e-44
Identity = 89/154 (57.79%), Postives = 116/154 (75.32%), Query Frame = 0
Query: 1 MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
M+TS+RAP+H+WTKEEE TLVE L+ELVS+GGW+SDN TFR GY + L +MM E++PG
Sbjct: 1 MSTSNRAPRHVWTKEEEGTLVEHLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 IQ-TSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVKVEEEAWK 120
++ T+ IDC IKTLKRTFQAIAEMRGP+CS+F WND+ KCI AEK+L+DNWV+V +
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSDFGWNDKEKCIIAEKELFDNWVRVRTGSSG 120
Query: 121 PEIRNG-------KIIRNAMEYANDQLKAIAEWP 147
+ + G + I A++ N QL+ IAEWP
Sbjct: 121 SKRKRGSQRDFDVEAIHLALDQTNKQLRQIAEWP 154
BLAST of PI0025360 vs. ExPASy TrEMBL
Match:
A0A5D3BVH6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00320 PE=4 SV=1)
HSP 1 Score: 186.0 bits (471), Expect = 1.2e-43
Identity = 95/190 (50.00%), Postives = 121/190 (63.68%), Query Frame = 0
Query: 1 MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
M +SSR KHLW KE++ATLVECLV+LV+ GW SDN TF LGY+S L +MM ++M G N
Sbjct: 1 MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60
Query: 61 IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVK-------- 120
IQ +TID IKT+++TF AI+E+RGPSCS FSWNDEL I EKD++DNW+K
Sbjct: 61 IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 120
Query: 121 ------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDAS 165
++ + I II+NAMEYAN QL I +W ++ QDAS
Sbjct: 121 FMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDWLILRNQDAS 180
BLAST of PI0025360 vs. ExPASy TrEMBL
Match:
A0A5A7V442 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005190 PE=4 SV=1)
HSP 1 Score: 186.0 bits (471), Expect = 1.2e-43
Identity = 95/190 (50.00%), Postives = 121/190 (63.68%), Query Frame = 0
Query: 1 MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
M +SSR KHLW KE++ATLVECLV+LV+ GW SDN TF LGY+S L +MM ++M G N
Sbjct: 166 MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 225
Query: 61 IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVK-------- 120
IQ +TID IKT+++TF AI+E+RGPSCS FSWNDEL I EKD++DNW+K
Sbjct: 226 IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 285
Query: 121 ------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDAS 165
++ + I II+NAMEYAN QL I +W ++ QDAS
Sbjct: 286 FMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDWLILRNQDAS 345
BLAST of PI0025360 vs. ExPASy TrEMBL
Match:
A0A5D3CHB8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00240 PE=4 SV=1)
HSP 1 Score: 185.3 bits (469), Expect = 2.1e-43
Identity = 104/221 (47.06%), Postives = 125/221 (56.56%), Query Frame = 0
Query: 1 MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
MT+SSR PKH WTKEEEA LVECLVELV+ GGWRSDN TFR GY + L +MM ++PG N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60
Query: 61 IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNW---------- 120
I STID IK +KR F A+AEMRGP+CS F WNDE KCI AEK+++D+W
Sbjct: 61 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPTVKGLLN 120
Query: 121 ---VKVEE----------------------------EAWKPEIRN--------------- 165
V +E A E RN
Sbjct: 121 KSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGTARVSERRNVSSGSKRKRTGHATD 180
BLAST of PI0025360 vs. NCBI nr
Match:
ADN33917.1 (hypothetical protein [Cucumis melo subsp. melo])
HSP 1 Score: 190.3 bits (482), Expect = 1.3e-44
Identity = 97/190 (51.05%), Postives = 122/190 (64.21%), Query Frame = 0
Query: 1 MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
M +SSR KHLW KE++ATLVECLV+LV+ GW SDN TF LGY+S L +MM ++M G N
Sbjct: 1 MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60
Query: 61 IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVK-------- 120
IQ +TID IKT+++TF AI+E+RGPSCS FSWNDEL I EKD++DNW+K
Sbjct: 61 IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 120
Query: 121 ------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDAS 165
+ + I II+NAMEYANDQL I +WP ++ QDAS
Sbjct: 121 FMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDWPILRNQDAS 180
BLAST of PI0025360 vs. NCBI nr
Match:
KAA0059630.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08162.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 186.8 bits (473), Expect = 1.5e-43
Identity = 89/154 (57.79%), Postives = 116/154 (75.32%), Query Frame = 0
Query: 1 MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
M+TS+RAP+H+WTKEEE TLVE L+ELVS+GGW+SDN TFR GY + L +MM E++PG
Sbjct: 1 MSTSNRAPRHVWTKEEEGTLVEHLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
Query: 61 IQ-TSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVKVEEEAWK 120
++ T+ IDC IKTLKRTFQAIAEMRGP+CS+F WND+ KCI AEK+L+DNWV+V +
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGPACSDFGWNDKEKCIIAEKELFDNWVRVRTGSSG 120
Query: 121 PEIRNG-------KIIRNAMEYANDQLKAIAEWP 147
+ + G + I A++ N QL+ IAEWP
Sbjct: 121 SKRKRGSQRDFDVEAIHLALDQTNKQLRQIAEWP 154
BLAST of PI0025360 vs. NCBI nr
Match:
KAA0060635.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 186.0 bits (471), Expect = 2.5e-43
Identity = 95/190 (50.00%), Postives = 121/190 (63.68%), Query Frame = 0
Query: 1 MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
M +SSR KHLW KE++ATLVECLV+LV+ GW SDN TF LGY+S L +MM ++M G N
Sbjct: 166 MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 225
Query: 61 IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVK-------- 120
IQ +TID IKT+++TF AI+E+RGPSCS FSWNDEL I EKD++DNW+K
Sbjct: 226 IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 285
Query: 121 ------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDAS 165
++ + I II+NAMEYAN QL I +W ++ QDAS
Sbjct: 286 FMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDWLILRNQDAS 345
BLAST of PI0025360 vs. NCBI nr
Match:
TYK02236.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 186.0 bits (471), Expect = 2.5e-43
Identity = 95/190 (50.00%), Postives = 121/190 (63.68%), Query Frame = 0
Query: 1 MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
M +SSR KHLW KE++ATLVECLV+LV+ GW SDN TF LGY+S L +MM ++M G N
Sbjct: 1 MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60
Query: 61 IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVK-------- 120
IQ +TID IKT+++TF AI+E+RGPSCS FSWNDEL I EKD++DNW+K
Sbjct: 61 IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 120
Query: 121 ------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDAS 165
++ + I II+NAMEYAN QL I +W ++ QDAS
Sbjct: 121 FMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDWLILRNQDAS 180
BLAST of PI0025360 vs. NCBI nr
Match:
TYK10662.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 185.3 bits (469), Expect = 4.3e-43
Identity = 104/221 (47.06%), Postives = 125/221 (56.56%), Query Frame = 0
Query: 1 MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
MT+SSR PKH WTKEEEA LVECLVELV+ GGWRSDN TFR GY + L +MM ++PG N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60
Query: 61 IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNW---------- 120
I STID IK +KR F A+AEMRGP+CS F WNDE KCI AEK+++D+W
Sbjct: 61 IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPTVKGLLN 120
Query: 121 ---VKVEE----------------------------EAWKPEIRN--------------- 165
V +E A E RN
Sbjct: 121 KSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGTARVSERRNVSSGSKRKRTGHATD 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
E5GBS5 | 6.5e-45 | 51.05 | Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
A0A5A7UWW9 | 7.2e-44 | 57.79 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BVH6 | 1.2e-43 | 50.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7V442 | 1.2e-43 | 50.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3CHB8 | 2.1e-43 | 47.06 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
ADN33917.1 | 1.3e-44 | 51.05 | hypothetical protein [Cucumis melo subsp. melo] | [more] |
KAA0059630.1 | 1.5e-43 | 57.79 | retrotransposon protein [Cucumis melo var. makuwa] >TYK08162.1 retrotransposon p... | [more] |
KAA0060635.1 | 2.5e-43 | 50.00 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK02236.1 | 2.5e-43 | 50.00 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK10662.1 | 4.3e-43 | 47.06 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |