PI0025360 (gene) Melon (PI 482460) v1

Overview
NamePI0025360
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr09: 15932549 .. 15933394 (-)
RNA-Seq ExpressionPI0025360
SyntenyPI0025360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACTTCTTCAAGGGCCCCAAAGCACCTATGGACGAAAGAGGAGGAGGCCACCCTCGTTGAATGTCTAGTAGAGTTGGTATCCGTCGGCGGCTGGAGGTCGGACAACGAGACGTTTAGACTCGGTTATCATAGTCATCTACAGAAAATGATGGTTGAACGAATGCCGGGACATAACATACAGACTTCGACCATTGATTGTTGGATAAAGACGCTTAAAAGAACGTTCCAAGCTATAGCTGAAATGCGGGGTCCATCGTGTAGTGAGTTCAGTTGGAACGATGAGCTCAAATGCATATTTGCCGAGAAGGACTTGTATGACAATTGGGTGAAGGTATGTTCTTGATTCTATCTATTACTGTTCGTTTCTAATAGTAAATTGATTAATTAGTTCCTGCAACACTGATACAGAGTCATCCAGCTGCGAAGGGCCTCCTAAACAAATCATTTCCCCATTACGACGACCTATGCTACGTATTTGGAAGAGATTGTGCAACAGAAAGGCGCGCTGAAACCTTCGCCAATGTTGGGTCGAACGTGCCCGAAGGGTACGGAGATTTCCCGTCGACGACGTCAACAACATGGAGATCCCCTCGATGTACATGTAGGGACTAGACATGTCACCTTACGACGTCATGGGCACACGACCCGATCGCTCAGCTGAGGGTAGGACTGGTTCGAGCAGGTCGAAGAGGAAGCATGGAAGCCAGAAATTAGAAACGGCAAAATCATTCGTAATGCGATGGAGTATGCAAATGACCAACTGAAGGCCATTGCAGAATGGCCAAATGTACAACGCCAAGATGCAAGCGCTACACATGCGGAGGTTATTAGGCAGTTGTAG

mRNA sequence

ATGACAACTTCTTCAAGGGCCCCAAAGCACCTATGGACGAAAGAGGAGGAGGCCACCCTCGTTGAATGTCTAGTAGAGTTGGTATCCGTCGGCGGCTGGAGGTCGGACAACGAGACGTTTAGACTCGGTTATCATAGTCATCTACAGAAAATGATGGTTGAACGAATGCCGGGACATAACATACAGACTTCGACCATTGATTGTTGGATAAAGACGCTTAAAAGAACGTTCCAAGCTATAGCTGAAATGCGGGGTCCATCGTGTAGTGAGTTCAGTTGGAACGATGAGCTCAAATGCATATTTGCCGAGAAGGACTTGTATGACAATTGGGTGAAGGTCGAAGAGGAAGCATGGAAGCCAGAAATTAGAAACGGCAAAATCATTCGTAATGCGATGGAGTATGCAAATGACCAACTGAAGGCCATTGCAGAATGGCCAAATGTACAACGCCAAGATGCAAGCGCTACACATGCGGAGGTTATTAGGCAGTTGTAG

Coding sequence (CDS)

ATGACAACTTCTTCAAGGGCCCCAAAGCACCTATGGACGAAAGAGGAGGAGGCCACCCTCGTTGAATGTCTAGTAGAGTTGGTATCCGTCGGCGGCTGGAGGTCGGACAACGAGACGTTTAGACTCGGTTATCATAGTCATCTACAGAAAATGATGGTTGAACGAATGCCGGGACATAACATACAGACTTCGACCATTGATTGTTGGATAAAGACGCTTAAAAGAACGTTCCAAGCTATAGCTGAAATGCGGGGTCCATCGTGTAGTGAGTTCAGTTGGAACGATGAGCTCAAATGCATATTTGCCGAGAAGGACTTGTATGACAATTGGGTGAAGGTCGAAGAGGAAGCATGGAAGCCAGAAATTAGAAACGGCAAAATCATTCGTAATGCGATGGAGTATGCAAATGACCAACTGAAGGCCATTGCAGAATGGCCAAATGTACAACGCCAAGATGCAAGCGCTACACATGCGGAGGTTATTAGGCAGTTGTAG

Protein sequence

MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHNIQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVKVEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDASATHAEVIRQL
Homology
BLAST of PI0025360 vs. ExPASy TrEMBL
Match: E5GBS5 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 6.5e-45
Identity = 97/190 (51.05%), Postives = 122/190 (64.21%), Query Frame = 0

Query: 1   MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
           M +SSR  KHLW KE++ATLVECLV+LV+  GW SDN TF LGY+S L +MM ++M G N
Sbjct: 1   MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60

Query: 61  IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVK-------- 120
           IQ +TID  IKT+++TF AI+E+RGPSCS FSWNDEL  I  EKD++DNW+K        
Sbjct: 61  IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 120

Query: 121 ------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDAS 165
                              + +     I    II+NAMEYANDQL  I +WP ++ QDAS
Sbjct: 121 FMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDWPILRNQDAS 180

BLAST of PI0025360 vs. ExPASy TrEMBL
Match: A0A5A7UWW9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00480 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 7.2e-44
Identity = 89/154 (57.79%), Postives = 116/154 (75.32%), Query Frame = 0

Query: 1   MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
           M+TS+RAP+H+WTKEEE TLVE L+ELVS+GGW+SDN TFR GY + L +MM E++PG  
Sbjct: 1   MSTSNRAPRHVWTKEEEGTLVEHLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IQ-TSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVKVEEEAWK 120
           ++ T+ IDC IKTLKRTFQAIAEMRGP+CS+F WND+ KCI AEK+L+DNWV+V   +  
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSDFGWNDKEKCIIAEKELFDNWVRVRTGSSG 120

Query: 121 PEIRNG-------KIIRNAMEYANDQLKAIAEWP 147
            + + G       + I  A++  N QL+ IAEWP
Sbjct: 121 SKRKRGSQRDFDVEAIHLALDQTNKQLRQIAEWP 154

BLAST of PI0025360 vs. ExPASy TrEMBL
Match: A0A5D3BVH6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00320 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.2e-43
Identity = 95/190 (50.00%), Postives = 121/190 (63.68%), Query Frame = 0

Query: 1   MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
           M +SSR  KHLW KE++ATLVECLV+LV+  GW SDN TF LGY+S L +MM ++M G N
Sbjct: 1   MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60

Query: 61  IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVK-------- 120
           IQ +TID  IKT+++TF AI+E+RGPSCS FSWNDEL  I  EKD++DNW+K        
Sbjct: 61  IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 120

Query: 121 ------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDAS 165
                             ++ +     I    II+NAMEYAN QL  I +W  ++ QDAS
Sbjct: 121 FMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDWLILRNQDAS 180

BLAST of PI0025360 vs. ExPASy TrEMBL
Match: A0A5A7V442 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005190 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.2e-43
Identity = 95/190 (50.00%), Postives = 121/190 (63.68%), Query Frame = 0

Query: 1   MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
           M +SSR  KHLW KE++ATLVECLV+LV+  GW SDN TF LGY+S L +MM ++M G N
Sbjct: 166 MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 225

Query: 61  IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVK-------- 120
           IQ +TID  IKT+++TF AI+E+RGPSCS FSWNDEL  I  EKD++DNW+K        
Sbjct: 226 IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 285

Query: 121 ------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDAS 165
                             ++ +     I    II+NAMEYAN QL  I +W  ++ QDAS
Sbjct: 286 FMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDWLILRNQDAS 345

BLAST of PI0025360 vs. ExPASy TrEMBL
Match: A0A5D3CHB8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00240 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 2.1e-43
Identity = 104/221 (47.06%), Postives = 125/221 (56.56%), Query Frame = 0

Query: 1   MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
           MT+SSR PKH WTKEEEA LVECLVELV+ GGWRSDN TFR GY + L +MM  ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 61  IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNW---------- 120
           I  STID  IK +KR F A+AEMRGP+CS F WNDE KCI AEK+++D+W          
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPTVKGLLN 120

Query: 121 ---VKVEE----------------------------EAWKPEIRN--------------- 165
              V  +E                             A   E RN               
Sbjct: 121 KSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGTARVSERRNVSSGSKRKRTGHATD 180

BLAST of PI0025360 vs. NCBI nr
Match: ADN33917.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-44
Identity = 97/190 (51.05%), Postives = 122/190 (64.21%), Query Frame = 0

Query: 1   MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
           M +SSR  KHLW KE++ATLVECLV+LV+  GW SDN TF LGY+S L +MM ++M G N
Sbjct: 1   MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60

Query: 61  IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVK-------- 120
           IQ +TID  IKT+++TF AI+E+RGPSCS FSWNDEL  I  EKD++DNW+K        
Sbjct: 61  IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 120

Query: 121 ------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDAS 165
                              + +     I    II+NAMEYANDQL  I +WP ++ QDAS
Sbjct: 121 FMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDWPILRNQDAS 180

BLAST of PI0025360 vs. NCBI nr
Match: KAA0059630.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08162.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 1.5e-43
Identity = 89/154 (57.79%), Postives = 116/154 (75.32%), Query Frame = 0

Query: 1   MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
           M+TS+RAP+H+WTKEEE TLVE L+ELVS+GGW+SDN TFR GY + L +MM E++PG  
Sbjct: 1   MSTSNRAPRHVWTKEEEGTLVEHLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IQ-TSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVKVEEEAWK 120
           ++ T+ IDC IKTLKRTFQAIAEMRGP+CS+F WND+ KCI AEK+L+DNWV+V   +  
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSDFGWNDKEKCIIAEKELFDNWVRVRTGSSG 120

Query: 121 PEIRNG-------KIIRNAMEYANDQLKAIAEWP 147
            + + G       + I  A++  N QL+ IAEWP
Sbjct: 121 SKRKRGSQRDFDVEAIHLALDQTNKQLRQIAEWP 154

BLAST of PI0025360 vs. NCBI nr
Match: KAA0060635.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 186.0 bits (471), Expect = 2.5e-43
Identity = 95/190 (50.00%), Postives = 121/190 (63.68%), Query Frame = 0

Query: 1   MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
           M +SSR  KHLW KE++ATLVECLV+LV+  GW SDN TF LGY+S L +MM ++M G N
Sbjct: 166 MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 225

Query: 61  IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVK-------- 120
           IQ +TID  IKT+++TF AI+E+RGPSCS FSWNDEL  I  EKD++DNW+K        
Sbjct: 226 IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 285

Query: 121 ------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDAS 165
                             ++ +     I    II+NAMEYAN QL  I +W  ++ QDAS
Sbjct: 286 FMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDWLILRNQDAS 345

BLAST of PI0025360 vs. NCBI nr
Match: TYK02236.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 186.0 bits (471), Expect = 2.5e-43
Identity = 95/190 (50.00%), Postives = 121/190 (63.68%), Query Frame = 0

Query: 1   MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
           M +SSR  KHLW KE++ATLVECLV+LV+  GW SDN TF LGY+S L +MM ++M G N
Sbjct: 1   MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60

Query: 61  IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNWVK-------- 120
           IQ +TID  IKT+++TF AI+E+RGPSCS FSWNDEL  I  EKD++DNW+K        
Sbjct: 61  IQATTIDSCIKTMEKTFHAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDE 120

Query: 121 ------------------VEEEAWKPEIRNGKIIRNAMEYANDQLKAIAEWPNVQRQDAS 165
                             ++ +     I    II+NAMEYAN QL  I +W  ++ QDAS
Sbjct: 121 FMDSRLGRSGDGRNASSRLKRKRCGRLIETANIIQNAMEYANGQLNRIVDWLILRNQDAS 180

BLAST of PI0025360 vs. NCBI nr
Match: TYK10662.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 185.3 bits (469), Expect = 4.3e-43
Identity = 104/221 (47.06%), Postives = 125/221 (56.56%), Query Frame = 0

Query: 1   MTTSSRAPKHLWTKEEEATLVECLVELVSVGGWRSDNETFRLGYHSHLQKMMVERMPGHN 60
           MT+SSR PKH WTKEEEA LVECLVELV+ GGWRSDN TFR GY + L +MM  ++PG N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 61  IQTSTIDCWIKTLKRTFQAIAEMRGPSCSEFSWNDELKCIFAEKDLYDNW---------- 120
           I  STID  IK +KR F A+AEMRGP+CS F WNDE KCI AEK+++D+W          
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPTVKGLLN 120

Query: 121 ---VKVEE----------------------------EAWKPEIRN--------------- 165
              V  +E                             A   E RN               
Sbjct: 121 KSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGTARVSERRNVSSGSKRKRTGHATD 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
E5GBS56.5e-4551.05Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5A7UWW97.2e-4457.79Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BVH61.2e-4350.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V4421.2e-4350.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CHB82.1e-4347.06Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
ADN33917.11.3e-4451.05hypothetical protein [Cucumis melo subsp. melo][more]
KAA0059630.11.5e-4357.79retrotransposon protein [Cucumis melo var. makuwa] >TYK08162.1 retrotransposon p... [more]
KAA0060635.12.5e-4350.00retrotransposon protein [Cucumis melo var. makuwa][more]
TYK02236.12.5e-4350.00retrotransposon protein [Cucumis melo var. makuwa][more]
TYK10662.14.3e-4347.06retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024752Myb/SANT-like domainPFAMPF12776Myb_DNA-bind_3coord: 12..109
e-value: 1.7E-6
score: 28.9
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 3..117
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 3..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0025360.1PI0025360.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane