PI0025329 (gene) Melon (PI 482460) v1

Overview
NamePI0025329
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr05: 18770549 .. 18771439 (-)
RNA-Seq ExpressionPI0025329
SyntenyPI0025329
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAATCAAGGTAGTGTCAAAGACATGTGGGATCCTCTTATAAACAACTGGAACATCAAGCTGAGAAGGCCTTTGAGGGACCATGAAAGCCATCAGTGGAATGACCTTGTTTGTCTCCTTCCCAGGCCAAACAACAGCAATGAAGCTGACATCCCTATATGGAATCTCAATACAAATCGAAACTTTAGCATTGCATCAGTTAAAAACAACATCTTCCAAACTCATCTTAGGGATGAACATGGTATTGATCAAAATATCTTCAGAAACTTATGGAGATCCAGTATACCACAAAAAGGAAAATTCTTCATATGGTCTCTCATACACAAATGCATAAACACTACTGATATGCTTCAAAGAAGATATCCAAAATGGCTCCTTCAACCAAATAGATGCTCTCTTTGCAAGTCAGAATCTGAAGATATAAATCACTTATTTGTCTCCTGCCCCATCTCTATTTCTCTTTGGTCTCATGTGGATATAATTACTGGCTGGAAAAATTCTGGAAGCTCCATTACTTCTATTTGCCAAAATCTTTGCAGCATCAATCAAAAGAACAAGAAAGGTATCATCACTTTCAATTCTGTGGCTGCTGTTCTTTGGTCTATTTGGCTTGAAAGAAACAACAGAATCTTCAACAACAAAGAGAAAAACTTCTGCAACCTTTGGGAGGACATCAAAGCCTTAGTTGGTTTTTGGACAAGCAGAAACAAGTTGTTCAAAAACTATAATGCTAGTTCTATTGCACTAAATCTCAATGCTTTCATGTAATTTTGTTTGGGTTTGGGCTTGTTTCTAGCCCTTTTTGCTACAGTCTTTGCTTCCTGTACTTATTCTGATTATTATTAATGAAGCGGGAGTGATGAAGGTGCTAAGGAGGTGTCCACCTAG

mRNA sequence

ATGGACAATCAAGGTAGTGTCAAAGACATGTGGGATCCTCTTATAAACAACTGGAACATCAAGCTGAGAAGGCCTTTGAGGGACCATGAAAGCCATCAGTGGAATGACCTTGTTTGTCTCCTTCCCAGGCCAAACAACAGCAATGAAGCTGACATCCCTATATGGAATCTCAATACAAATCGAAACTTTAGCATTGCATCAGTTAAAAACAACATCTTCCAAACTCATCTTAGGGATGAACATGGTATTGATCAAAATATCTTCAGAAACTTATGGAGATCCAGTATACCACAAAAAGGAAAATTCTTCATATGGTCTCTCATACACAAATGCATAAACACTACTGATATGCTTCAAAGAAGATATCCAAAATGGCTCCTTCAACCAAATAGATGCTCTCTTTGCAAGTCAGAATCTGAAGATATAAATCACTTATTTGTCTCCTGCCCCATCTCTATTTCTCTTTGGTCTCATGTGGATATAATTACTGGCTGGAAAAATTCTGGAAGCTCCATTACTTCTATTTGCCAAAATCTTTGCAGCATCAATCAAAAGAACAAGAAAGGTATCATCACTTTCAATTCTGTGGCTGCTGTTCTTTGGTCTATTTGGCTTGAAAGAAACAACAGAATCTTCAACAACAAAGAGAAAAACTTCTGCAACCTTTGGGAGGACATCAAAGCCTTAGTTGGTTTTTGGACAAGCAGAAACAAGTTGTTCAAAAACTATAATGCTAGTTCTATTGCACTAAATCTCAATGCTTTCATCGGGAGTGATGAAGGTGCTAAGGAGGTGTCCACCTAG

Coding sequence (CDS)

ATGGACAATCAAGGTAGTGTCAAAGACATGTGGGATCCTCTTATAAACAACTGGAACATCAAGCTGAGAAGGCCTTTGAGGGACCATGAAAGCCATCAGTGGAATGACCTTGTTTGTCTCCTTCCCAGGCCAAACAACAGCAATGAAGCTGACATCCCTATATGGAATCTCAATACAAATCGAAACTTTAGCATTGCATCAGTTAAAAACAACATCTTCCAAACTCATCTTAGGGATGAACATGGTATTGATCAAAATATCTTCAGAAACTTATGGAGATCCAGTATACCACAAAAAGGAAAATTCTTCATATGGTCTCTCATACACAAATGCATAAACACTACTGATATGCTTCAAAGAAGATATCCAAAATGGCTCCTTCAACCAAATAGATGCTCTCTTTGCAAGTCAGAATCTGAAGATATAAATCACTTATTTGTCTCCTGCCCCATCTCTATTTCTCTTTGGTCTCATGTGGATATAATTACTGGCTGGAAAAATTCTGGAAGCTCCATTACTTCTATTTGCCAAAATCTTTGCAGCATCAATCAAAAGAACAAGAAAGGTATCATCACTTTCAATTCTGTGGCTGCTGTTCTTTGGTCTATTTGGCTTGAAAGAAACAACAGAATCTTCAACAACAAAGAGAAAAACTTCTGCAACCTTTGGGAGGACATCAAAGCCTTAGTTGGTTTTTGGACAAGCAGAAACAAGTTGTTCAAAAACTATAATGCTAGTTCTATTGCACTAAATCTCAATGCTTTCATCGGGAGTGATGAAGGTGCTAAGGAGGTGTCCACCTAG

Protein sequence

MDNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFIGSDEGAKEVST
Homology
BLAST of PI0025329 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 3.0e-71
Identity = 119/255 (46.67%), Postives = 170/255 (66.67%), Query Frame = 0

Query: 2    DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
            + +GSVKD+W+P + +WNI + RPLRDHE + W+++   LP P        P+W LN+N 
Sbjct: 783  NKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNN 842

Query: 62   NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
             F  AS+K ++ +      +    ++++ LW+   P+K KFFIW+LIH CINT D LQ+R
Sbjct: 843  IFDTASIKKDLSEASASPTN-FHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKR 902

Query: 122  YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
             P W L PN C +C    EDINHLF+ CP S  LWS    +  W ++ + + S+ QN+CS
Sbjct: 903  LPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWNSTPNDVKSLAQNICS 962

Query: 182  INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFK 241
            +N K +KG+ITFN++A +LW IWLERNNRIF  ++K F +LWEDI A  G W+ ++KLF 
Sbjct: 963  LNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFS 1022

Query: 242  NYNASSIALNLNAFI 257
            NY+  SIALN++AF+
Sbjct: 1023 NYDCCSIALNISAFV 1036

BLAST of PI0025329 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 3.0e-71
Identity = 119/255 (46.67%), Postives = 170/255 (66.67%), Query Frame = 0

Query: 2   DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
           + +GSVKD+W+P + +WNI + RPLRDHE + W+++   LP P        P+W LN+N 
Sbjct: 689 NKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNN 748

Query: 62  NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
            F  AS+K ++ +      +    ++++ LW+   P+K KFFIW+LIH CINT D LQ+R
Sbjct: 749 IFDTASIKKDLSEASASPTN-FHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKR 808

Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
            P W L PN C +C    EDINHLF+ CP S  LWS    +  W ++ + + S+ QN+CS
Sbjct: 809 LPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWNSTPNDVKSLAQNICS 868

Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFK 241
           +N K +KG+ITFN++A +LW IWLERNNRIF  ++K F +LWEDI A  G W+ ++KLF 
Sbjct: 869 LNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFS 928

Query: 242 NYNASSIALNLNAFI 257
           NY+  SIALN++AF+
Sbjct: 929 NYDCCSIALNISAFV 942

BLAST of PI0025329 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 2.5e-70
Identity = 120/255 (47.06%), Postives = 170/255 (66.67%), Query Frame = 0

Query: 2    DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
            + +GSVK+ W+P  N+W++ + RPLRDHE + W+++   LP P  +     P+WNLN+N 
Sbjct: 891  NKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNN 950

Query: 62   NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
             F  ASVK  I +  +   +    N+++ LW+   P+K KFFIW+LIH CINT D LQ+R
Sbjct: 951  IFDTASVKRAIAEAPISPAN-FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKR 1010

Query: 122  YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
             P W L PN C +C    EDINHLF+ CP S  LWS    +  W ++ + + S+ QN+CS
Sbjct: 1011 LPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWNSTPTDVQSLIQNICS 1070

Query: 182  INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFK 241
            +N +N+KG+ITFN+ A +LW IWLERNNRIF  +EK   +LWED  A +G W+ ++KLF 
Sbjct: 1071 LNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCKSKLFS 1130

Query: 242  NYNASSIALNLNAFI 257
            NY+  SIALN++AF+
Sbjct: 1131 NYDCCSIALNISAFV 1144

BLAST of PI0025329 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 3.1e-60
Identity = 106/233 (45.49%), Postives = 150/233 (64.38%), Query Frame = 0

Query: 2   DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
           + +GSVKD W+P  N+W++ + RPLRDHE + W+++   LP P  +     P+W LN+N 
Sbjct: 234 NKKGSVKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNN 293

Query: 62  NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
            F  ASVK  + +  +   +    N+++ LW+   P+K KFFIW+LIH CINT D LQ+R
Sbjct: 294 IFDTASVKKILSEAPVSPAN-FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKR 353

Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
            P W L PN C +C    EDINHLF+ CP S  LWS    +  W  + + + S+ QN+CS
Sbjct: 354 LPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPTDVQSLVQNICS 413

Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT 235
           +N +N+KG+ITFN+ A +LW IWLERNNRIF  + K+  +LWEDI A  G ++
Sbjct: 414 LNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFS 465

BLAST of PI0025329 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 3.1e-60
Identity = 106/233 (45.49%), Postives = 150/233 (64.38%), Query Frame = 0

Query: 2   DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
           + +GSVKD W+P  N+W++ + RPLRDHE + W+++   LP P  +     P+W LN+N 
Sbjct: 191 NKKGSVKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNN 250

Query: 62  NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
            F  ASVK  + +  +   +    N+++ LW+   P+K KFFIW+LIH CINT D LQ+R
Sbjct: 251 IFDTASVKKILSEAPVSPAN-FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKR 310

Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
            P W L PN C +C    EDINHLF+ CP S  LWS    +  W  + + + S+ QN+CS
Sbjct: 311 LPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPTDVQSLVQNICS 370

Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT 235
           +N +N+KG+ITFN+ A +LW IWLERNNRIF  + K+  +LWEDI A  G ++
Sbjct: 371 LNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFS 422

BLAST of PI0025329 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 278.5 bits (711), Expect = 6.1e-71
Identity = 119/255 (46.67%), Postives = 170/255 (66.67%), Query Frame = 0

Query: 2   DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
           + +GSVKD+W+P + +WNI + RPLRDHE + W+++   LP P        P+W LN+N 
Sbjct: 689 NKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNN 748

Query: 62  NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
            F  AS+K ++ +      +    ++++ LW+   P+K KFFIW+LIH CINT D LQ+R
Sbjct: 749 IFDTASIKKDLSEASASPTN-FHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKR 808

Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
            P W L PN C +C    EDINHLF+ CP S  LWS    +  W ++ + + S+ QN+CS
Sbjct: 809 LPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWNSTPNDVKSLAQNICS 868

Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFK 241
           +N K +KG+ITFN++A +LW IWLERNNRIF  ++K F +LWEDI A  G W+ ++KLF 
Sbjct: 869 LNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFS 928

Query: 242 NYNASSIALNLNAFI 257
           NY+  SIALN++AF+
Sbjct: 929 NYDCCSIALNISAFV 942

BLAST of PI0025329 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 278.5 bits (711), Expect = 6.1e-71
Identity = 119/255 (46.67%), Postives = 170/255 (66.67%), Query Frame = 0

Query: 2    DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
            + +GSVKD+W+P + +WNI + RPLRDHE + W+++   LP P        P+W LN+N 
Sbjct: 783  NKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNN 842

Query: 62   NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
             F  AS+K ++ +      +    ++++ LW+   P+K KFFIW+LIH CINT D LQ+R
Sbjct: 843  IFDTASIKKDLSEASASPTN-FHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKR 902

Query: 122  YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
             P W L PN C +C    EDINHLF+ CP S  LWS    +  W ++ + + S+ QN+CS
Sbjct: 903  LPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWNSTPNDVKSLAQNICS 962

Query: 182  INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFK 241
            +N K +KG+ITFN++A +LW IWLERNNRIF  ++K F +LWEDI A  G W+ ++KLF 
Sbjct: 963  LNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFS 1022

Query: 242  NYNASSIALNLNAFI 257
            NY+  SIALN++AF+
Sbjct: 1023 NYDCCSIALNISAFV 1036

BLAST of PI0025329 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 5.2e-70
Identity = 120/255 (47.06%), Postives = 170/255 (66.67%), Query Frame = 0

Query: 2    DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
            + +GSVK+ W+P  N+W++ + RPLRDHE + W+++   LP P  +     P+WNLN+N 
Sbjct: 891  NKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNN 950

Query: 62   NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
             F  ASVK  I +  +   +    N+++ LW+   P+K KFFIW+LIH CINT D LQ+R
Sbjct: 951  IFDTASVKRAIAEAPISPAN-FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKR 1010

Query: 122  YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
             P W L PN C +C    EDINHLF+ CP S  LWS    +  W ++ + + S+ QN+CS
Sbjct: 1011 LPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWNSTPTDVQSLIQNICS 1070

Query: 182  INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFK 241
            +N +N+KG+ITFN+ A +LW IWLERNNRIF  +EK   +LWED  A +G W+ ++KLF 
Sbjct: 1071 LNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCKSKLFS 1130

Query: 242  NYNASSIALNLNAFI 257
            NY+  SIALN++AF+
Sbjct: 1131 NYDCCSIALNISAFV 1144

BLAST of PI0025329 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 241.9 bits (616), Expect = 6.3e-60
Identity = 106/233 (45.49%), Postives = 150/233 (64.38%), Query Frame = 0

Query: 2   DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
           + +GSVKD W+P  N+W++ + RPLRDHE + W+++   LP P  +     P+W LN+N 
Sbjct: 234 NKKGSVKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNN 293

Query: 62  NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
            F  ASVK  + +  +   +    N+++ LW+   P+K KFFIW+LIH CINT D LQ+R
Sbjct: 294 IFDTASVKKILSEAPVSPAN-FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKR 353

Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
            P W L PN C +C    EDINHLF+ CP S  LWS    +  W  + + + S+ QN+CS
Sbjct: 354 LPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPTDVQSLVQNICS 413

Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT 235
           +N +N+KG+ITFN+ A +LW IWLERNNRIF  + K+  +LWEDI A  G ++
Sbjct: 414 LNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFS 465

BLAST of PI0025329 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 241.9 bits (616), Expect = 6.3e-60
Identity = 106/233 (45.49%), Postives = 150/233 (64.38%), Query Frame = 0

Query: 2   DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
           + +GSVKD W+P  N+W++ + RPLRDHE + W+++   LP P  +     P+W LN+N 
Sbjct: 191 NKKGSVKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNN 250

Query: 62  NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
            F  ASVK  + +  +   +    N+++ LW+   P+K KFFIW+LIH CINT D LQ+R
Sbjct: 251 IFDTASVKKILSEAPVSPAN-FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKR 310

Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
            P W L PN C +C    EDINHLF+ CP S  LWS    +  W  + + + S+ QN+CS
Sbjct: 311 LPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPTDVQSLVQNICS 370

Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT 235
           +N +N+KG+ITFN+ A +LW IWLERNNRIF  + K+  +LWEDI A  G ++
Sbjct: 371 LNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFS 422

BLAST of PI0025329 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 4.2e-09
Identity = 39/155 (25.16%), Postives = 68/155 (43.87%), Query Frame = 0

Query: 91  LWRSSIPQKGKFFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCP 150
           +W+     K K F+W L+   + T D L+RR+   +    +C  C  E E   HLF  C 
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRH---IRNHPQCHRCCQEDETSQHLFFDCF 77

Query: 151 ISISLWSHVDI-ITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLWSIWLERNN 210
            +  +W    I     + +G ++ +  + L S    N++  + FN    +LW +W  RN 
Sbjct: 78  YAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQL-FNLAIWILWRLWKSRNQ 137

Query: 211 RIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYN 245
            +F  K  ++ N  +  +  V  W   N   ++ N
Sbjct: 138 LVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLN 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TIB83.0e-7146.67LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TR153.0e-7146.67LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T9I72.5e-7047.06LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TSA73.1e-6045.49LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3E1E33.1e-6045.49LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
KAA0044556.16.1e-7146.67LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0041397.16.1e-7146.67LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0039950.15.2e-7047.06LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... [more]
KAA0044451.16.3e-6045.49LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK29578.16.3e-6045.49LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT3G25270.14.2e-0925.16Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 80..156
e-value: 1.7E-17
score: 63.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0025329.1PI0025329.1mRNA