Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAATCAAGGTAGTGTCAAAGACATGTGGGATCCTCTTATAAACAACTGGAACATCAAGCTGAGAAGGCCTTTGAGGGACCATGAAAGCCATCAGTGGAATGACCTTGTTTGTCTCCTTCCCAGGCCAAACAACAGCAATGAAGCTGACATCCCTATATGGAATCTCAATACAAATCGAAACTTTAGCATTGCATCAGTTAAAAACAACATCTTCCAAACTCATCTTAGGGATGAACATGGTATTGATCAAAATATCTTCAGAAACTTATGGAGATCCAGTATACCACAAAAAGGAAAATTCTTCATATGGTCTCTCATACACAAATGCATAAACACTACTGATATGCTTCAAAGAAGATATCCAAAATGGCTCCTTCAACCAAATAGATGCTCTCTTTGCAAGTCAGAATCTGAAGATATAAATCACTTATTTGTCTCCTGCCCCATCTCTATTTCTCTTTGGTCTCATGTGGATATAATTACTGGCTGGAAAAATTCTGGAAGCTCCATTACTTCTATTTGCCAAAATCTTTGCAGCATCAATCAAAAGAACAAGAAAGGTATCATCACTTTCAATTCTGTGGCTGCTGTTCTTTGGTCTATTTGGCTTGAAAGAAACAACAGAATCTTCAACAACAAAGAGAAAAACTTCTGCAACCTTTGGGAGGACATCAAAGCCTTAGTTGGTTTTTGGACAAGCAGAAACAAGTTGTTCAAAAACTATAATGCTAGTTCTATTGCACTAAATCTCAATGCTTTCATGTAATTTTGTTTGGGTTTGGGCTTGTTTCTAGCCCTTTTTGCTACAGTCTTTGCTTCCTGTACTTATTCTGATTATTATTAATGAAGCGGGAGTGATGAAGGTGCTAAGGAGGTGTCCACCTAG
mRNA sequence
ATGGACAATCAAGGTAGTGTCAAAGACATGTGGGATCCTCTTATAAACAACTGGAACATCAAGCTGAGAAGGCCTTTGAGGGACCATGAAAGCCATCAGTGGAATGACCTTGTTTGTCTCCTTCCCAGGCCAAACAACAGCAATGAAGCTGACATCCCTATATGGAATCTCAATACAAATCGAAACTTTAGCATTGCATCAGTTAAAAACAACATCTTCCAAACTCATCTTAGGGATGAACATGGTATTGATCAAAATATCTTCAGAAACTTATGGAGATCCAGTATACCACAAAAAGGAAAATTCTTCATATGGTCTCTCATACACAAATGCATAAACACTACTGATATGCTTCAAAGAAGATATCCAAAATGGCTCCTTCAACCAAATAGATGCTCTCTTTGCAAGTCAGAATCTGAAGATATAAATCACTTATTTGTCTCCTGCCCCATCTCTATTTCTCTTTGGTCTCATGTGGATATAATTACTGGCTGGAAAAATTCTGGAAGCTCCATTACTTCTATTTGCCAAAATCTTTGCAGCATCAATCAAAAGAACAAGAAAGGTATCATCACTTTCAATTCTGTGGCTGCTGTTCTTTGGTCTATTTGGCTTGAAAGAAACAACAGAATCTTCAACAACAAAGAGAAAAACTTCTGCAACCTTTGGGAGGACATCAAAGCCTTAGTTGGTTTTTGGACAAGCAGAAACAAGTTGTTCAAAAACTATAATGCTAGTTCTATTGCACTAAATCTCAATGCTTTCATCGGGAGTGATGAAGGTGCTAAGGAGGTGTCCACCTAG
Coding sequence (CDS)
ATGGACAATCAAGGTAGTGTCAAAGACATGTGGGATCCTCTTATAAACAACTGGAACATCAAGCTGAGAAGGCCTTTGAGGGACCATGAAAGCCATCAGTGGAATGACCTTGTTTGTCTCCTTCCCAGGCCAAACAACAGCAATGAAGCTGACATCCCTATATGGAATCTCAATACAAATCGAAACTTTAGCATTGCATCAGTTAAAAACAACATCTTCCAAACTCATCTTAGGGATGAACATGGTATTGATCAAAATATCTTCAGAAACTTATGGAGATCCAGTATACCACAAAAAGGAAAATTCTTCATATGGTCTCTCATACACAAATGCATAAACACTACTGATATGCTTCAAAGAAGATATCCAAAATGGCTCCTTCAACCAAATAGATGCTCTCTTTGCAAGTCAGAATCTGAAGATATAAATCACTTATTTGTCTCCTGCCCCATCTCTATTTCTCTTTGGTCTCATGTGGATATAATTACTGGCTGGAAAAATTCTGGAAGCTCCATTACTTCTATTTGCCAAAATCTTTGCAGCATCAATCAAAAGAACAAGAAAGGTATCATCACTTTCAATTCTGTGGCTGCTGTTCTTTGGTCTATTTGGCTTGAAAGAAACAACAGAATCTTCAACAACAAAGAGAAAAACTTCTGCAACCTTTGGGAGGACATCAAAGCCTTAGTTGGTTTTTGGACAAGCAGAAACAAGTTGTTCAAAAACTATAATGCTAGTTCTATTGCACTAAATCTCAATGCTTTCATCGGGAGTGATGAAGGTGCTAAGGAGGTGTCCACCTAG
Protein sequence
MDNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFIGSDEGAKEVST
Homology
BLAST of PI0025329 vs. ExPASy TrEMBL
Match:
A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)
HSP 1 Score: 278.5 bits (711), Expect = 3.0e-71
Identity = 119/255 (46.67%), Postives = 170/255 (66.67%), Query Frame = 0
Query: 2 DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
+ +GSVKD+W+P + +WNI + RPLRDHE + W+++ LP P P+W LN+N
Sbjct: 783 NKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNN 842
Query: 62 NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
F AS+K ++ + + ++++ LW+ P+K KFFIW+LIH CINT D LQ+R
Sbjct: 843 IFDTASIKKDLSEASASPTN-FHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKR 902
Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
P W L PN C +C EDINHLF+ CP S LWS + W ++ + + S+ QN+CS
Sbjct: 903 LPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWNSTPNDVKSLAQNICS 962
Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFK 241
+N K +KG+ITFN++A +LW IWLERNNRIF ++K F +LWEDI A G W+ ++KLF
Sbjct: 963 LNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFS 1022
Query: 242 NYNASSIALNLNAFI 257
NY+ SIALN++AF+
Sbjct: 1023 NYDCCSIALNISAFV 1036
BLAST of PI0025329 vs. ExPASy TrEMBL
Match:
A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)
HSP 1 Score: 278.5 bits (711), Expect = 3.0e-71
Identity = 119/255 (46.67%), Postives = 170/255 (66.67%), Query Frame = 0
Query: 2 DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
+ +GSVKD+W+P + +WNI + RPLRDHE + W+++ LP P P+W LN+N
Sbjct: 689 NKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNN 748
Query: 62 NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
F AS+K ++ + + ++++ LW+ P+K KFFIW+LIH CINT D LQ+R
Sbjct: 749 IFDTASIKKDLSEASASPTN-FHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKR 808
Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
P W L PN C +C EDINHLF+ CP S LWS + W ++ + + S+ QN+CS
Sbjct: 809 LPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWNSTPNDVKSLAQNICS 868
Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFK 241
+N K +KG+ITFN++A +LW IWLERNNRIF ++K F +LWEDI A G W+ ++KLF
Sbjct: 869 LNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFS 928
Query: 242 NYNASSIALNLNAFI 257
NY+ SIALN++AF+
Sbjct: 929 NYDCCSIALNISAFV 942
BLAST of PI0025329 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 275.4 bits (703), Expect = 2.5e-70
Identity = 120/255 (47.06%), Postives = 170/255 (66.67%), Query Frame = 0
Query: 2 DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
+ +GSVK+ W+P N+W++ + RPLRDHE + W+++ LP P + P+WNLN+N
Sbjct: 891 NKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNN 950
Query: 62 NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
F ASVK I + + + N+++ LW+ P+K KFFIW+LIH CINT D LQ+R
Sbjct: 951 IFDTASVKRAIAEAPISPAN-FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKR 1010
Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
P W L PN C +C EDINHLF+ CP S LWS + W ++ + + S+ QN+CS
Sbjct: 1011 LPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWNSTPTDVQSLIQNICS 1070
Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFK 241
+N +N+KG+ITFN+ A +LW IWLERNNRIF +EK +LWED A +G W+ ++KLF
Sbjct: 1071 LNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCKSKLFS 1130
Query: 242 NYNASSIALNLNAFI 257
NY+ SIALN++AF+
Sbjct: 1131 NYDCCSIALNISAFV 1144
BLAST of PI0025329 vs. ExPASy TrEMBL
Match:
A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)
HSP 1 Score: 241.9 bits (616), Expect = 3.1e-60
Identity = 106/233 (45.49%), Postives = 150/233 (64.38%), Query Frame = 0
Query: 2 DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
+ +GSVKD W+P N+W++ + RPLRDHE + W+++ LP P + P+W LN+N
Sbjct: 234 NKKGSVKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNN 293
Query: 62 NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
F ASVK + + + + N+++ LW+ P+K KFFIW+LIH CINT D LQ+R
Sbjct: 294 IFDTASVKKILSEAPVSPAN-FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKR 353
Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
P W L PN C +C EDINHLF+ CP S LWS + W + + + S+ QN+CS
Sbjct: 354 LPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPTDVQSLVQNICS 413
Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT 235
+N +N+KG+ITFN+ A +LW IWLERNNRIF + K+ +LWEDI A G ++
Sbjct: 414 LNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFS 465
BLAST of PI0025329 vs. ExPASy TrEMBL
Match:
A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)
HSP 1 Score: 241.9 bits (616), Expect = 3.1e-60
Identity = 106/233 (45.49%), Postives = 150/233 (64.38%), Query Frame = 0
Query: 2 DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
+ +GSVKD W+P N+W++ + RPLRDHE + W+++ LP P + P+W LN+N
Sbjct: 191 NKKGSVKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNN 250
Query: 62 NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
F ASVK + + + + N+++ LW+ P+K KFFIW+LIH CINT D LQ+R
Sbjct: 251 IFDTASVKKILSEAPVSPAN-FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKR 310
Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
P W L PN C +C EDINHLF+ CP S LWS + W + + + S+ QN+CS
Sbjct: 311 LPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPTDVQSLVQNICS 370
Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT 235
+N +N+KG+ITFN+ A +LW IWLERNNRIF + K+ +LWEDI A G ++
Sbjct: 371 LNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFS 422
BLAST of PI0025329 vs. NCBI nr
Match:
KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 278.5 bits (711), Expect = 6.1e-71
Identity = 119/255 (46.67%), Postives = 170/255 (66.67%), Query Frame = 0
Query: 2 DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
+ +GSVKD+W+P + +WNI + RPLRDHE + W+++ LP P P+W LN+N
Sbjct: 689 NKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNN 748
Query: 62 NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
F AS+K ++ + + ++++ LW+ P+K KFFIW+LIH CINT D LQ+R
Sbjct: 749 IFDTASIKKDLSEASASPTN-FHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKR 808
Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
P W L PN C +C EDINHLF+ CP S LWS + W ++ + + S+ QN+CS
Sbjct: 809 LPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWNSTPNDVKSLAQNICS 868
Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFK 241
+N K +KG+ITFN++A +LW IWLERNNRIF ++K F +LWEDI A G W+ ++KLF
Sbjct: 869 LNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFS 928
Query: 242 NYNASSIALNLNAFI 257
NY+ SIALN++AF+
Sbjct: 929 NYDCCSIALNISAFV 942
BLAST of PI0025329 vs. NCBI nr
Match:
KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 278.5 bits (711), Expect = 6.1e-71
Identity = 119/255 (46.67%), Postives = 170/255 (66.67%), Query Frame = 0
Query: 2 DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
+ +GSVKD+W+P + +WNI + RPLRDHE + W+++ LP P P+W LN+N
Sbjct: 783 NKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNN 842
Query: 62 NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
F AS+K ++ + + ++++ LW+ P+K KFFIW+LIH CINT D LQ+R
Sbjct: 843 IFDTASIKKDLSEASASPTN-FHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKR 902
Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
P W L PN C +C EDINHLF+ CP S LWS + W ++ + + S+ QN+CS
Sbjct: 903 LPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWNSTPNDVKSLAQNICS 962
Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFK 241
+N K +KG+ITFN++A +LW IWLERNNRIF ++K F +LWEDI A G W+ ++KLF
Sbjct: 963 LNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFS 1022
Query: 242 NYNASSIALNLNAFI 257
NY+ SIALN++AF+
Sbjct: 1023 NYDCCSIALNISAFV 1036
BLAST of PI0025329 vs. NCBI nr
Match:
KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 275.4 bits (703), Expect = 5.2e-70
Identity = 120/255 (47.06%), Postives = 170/255 (66.67%), Query Frame = 0
Query: 2 DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
+ +GSVK+ W+P N+W++ + RPLRDHE + W+++ LP P + P+WNLN+N
Sbjct: 891 NKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNN 950
Query: 62 NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
F ASVK I + + + N+++ LW+ P+K KFFIW+LIH CINT D LQ+R
Sbjct: 951 IFDTASVKRAIAEAPISPAN-FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKR 1010
Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
P W L PN C +C EDINHLF+ CP S LWS + W ++ + + S+ QN+CS
Sbjct: 1011 LPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWNSTPTDVQSLIQNICS 1070
Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFK 241
+N +N+KG+ITFN+ A +LW IWLERNNRIF +EK +LWED A +G W+ ++KLF
Sbjct: 1071 LNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCKSKLFS 1130
Query: 242 NYNASSIALNLNAFI 257
NY+ SIALN++AF+
Sbjct: 1131 NYDCCSIALNISAFV 1144
BLAST of PI0025329 vs. NCBI nr
Match:
KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 241.9 bits (616), Expect = 6.3e-60
Identity = 106/233 (45.49%), Postives = 150/233 (64.38%), Query Frame = 0
Query: 2 DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
+ +GSVKD W+P N+W++ + RPLRDHE + W+++ LP P + P+W LN+N
Sbjct: 234 NKKGSVKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNN 293
Query: 62 NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
F ASVK + + + + N+++ LW+ P+K KFFIW+LIH CINT D LQ+R
Sbjct: 294 IFDTASVKKILSEAPVSPAN-FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKR 353
Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
P W L PN C +C EDINHLF+ CP S LWS + W + + + S+ QN+CS
Sbjct: 354 LPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPTDVQSLVQNICS 413
Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT 235
+N +N+KG+ITFN+ A +LW IWLERNNRIF + K+ +LWEDI A G ++
Sbjct: 414 LNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFS 465
BLAST of PI0025329 vs. NCBI nr
Match:
TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 241.9 bits (616), Expect = 6.3e-60
Identity = 106/233 (45.49%), Postives = 150/233 (64.38%), Query Frame = 0
Query: 2 DNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNR 61
+ +GSVKD W+P N+W++ + RPLRDHE + W+++ LP P + P+W LN+N
Sbjct: 191 NKKGSVKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNN 250
Query: 62 NFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRR 121
F ASVK + + + + N+++ LW+ P+K KFFIW+LIH CINT D LQ+R
Sbjct: 251 IFDTASVKKILSEAPVSPAN-FHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKR 310
Query: 122 YPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCS 181
P W L PN C +C EDINHLF+ CP S LWS + W + + + S+ QN+CS
Sbjct: 311 LPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPTDVQSLVQNICS 370
Query: 182 INQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWT 235
+N +N+KG+ITFN+ A +LW IWLERNNRIF + K+ +LWEDI A G ++
Sbjct: 371 LNIRNQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFS 422
BLAST of PI0025329 vs. TAIR 10
Match:
AT3G25270.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 59.7 bits (143), Expect = 4.2e-09
Identity = 39/155 (25.16%), Postives = 68/155 (43.87%), Query Frame = 0
Query: 91 LWRSSIPQKGKFFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCP 150
+W+ K K F+W L+ + T D L+RR+ + +C C E E HLF C
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRH---IRNHPQCHRCCQEDETSQHLFFDCF 77
Query: 151 ISISLWSHVDI-ITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLWSIWLERNN 210
+ +W I + +G ++ + + L S N++ + FN +LW +W RN
Sbjct: 78 YAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQL-FNLAIWILWRLWKSRNQ 137
Query: 211 RIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYN 245
+F K ++ N + + V W N ++ N
Sbjct: 138 LVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLN 168
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TIB8 | 3.0e-71 | 46.67 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TR15 | 3.0e-71 | 46.67 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7T9I7 | 2.5e-70 | 47.06 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TSA7 | 3.1e-60 | 45.49 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3E1E3 | 3.1e-60 | 45.49 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
KAA0044556.1 | 6.1e-71 | 46.67 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0041397.1 | 6.1e-71 | 46.67 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0039950.1 | 5.2e-70 | 47.06 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... | [more] |
KAA0044451.1 | 6.3e-60 | 45.49 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK29578.1 | 6.3e-60 | 45.49 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
AT3G25270.1 | 4.2e-09 | 25.16 | Ribonuclease H-like superfamily protein | [more] |