PI0025328 (gene) Melon (PI 482460) v1

Overview


Name	PI0025328
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol
Location	chr04: 16768481 .. 16769098 (-)
RNA-Seq Expression	PI0025328
Synteny	PI0025328

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGACCTCTGTGATACTGAATTTAAAGACTATAGAGAATCAGAGGACGCGACGTTAGCCCCTGAGTCGCAGCAAACCGTCTTTCTTGACGAGCTAGTTGATGACCCACTCCCCAAGGATAACCAAATAACCCTTGAGGAGGCTGGTGAGACGCGAGCTCCTTTGTCGTCAAAGCAAACTGAAAATCAACAAGGCAATGCGGCGGAAGAGAATGATGATGAAGAATTTTACAAGTACATTAATGAGGCAATCGCAAAGGCAATGATGGATGGACTTGAAGATATTTTTCAAAACCAAGCCAGTCTGCAAAAACGTGCAATGAAACAAGAAAAGCAGATCATGGACTTGGAATTAAAAATAGACAACCACCATCAGTCCCAGCATGATCAACTCGCATCTAAAATCGCGAGCCTCAAGGAACAAAATAAGGCGATAGTGAATTTGATCAAGAAAGCTTCTTTGCGGTCTGACAGACAATACAAATCAATGATGAATTACATCCACGCGGCCATCACAAGTCTCGTGCCCAAGCCTGCTAGTCCGCTTGAATTTAAGGATCCCCTTTCAGACACTGAATTGGACGCCACACCAAGACCTTCCAAAACGCTGCTATAA

mRNA sequence

ATGCAAGACCTCTGTGATACTGAATTTAAAGACTATAGAGAATCAGAGGACGCGACGTTAGCCCCTGAGTCGCAGCAAACCGTCTTTCTTGACGAGCTAGTTGATGACCCACTCCCCAAGGATAACCAAATAACCCTTGAGGAGGCTGGTGAGACGCGAGCTCCTTTGTCGTCAAAGCAAACTGAAAATCAACAAGGCAATGCGGCGGAAGAGAATGATGATGAAGAATTTTACAAGTACATTAATGAGGCAATCGCAAAGGCAATGATGGATGGACTTGAAGATATTTTTCAAAACCAAGCCAGTCTGCAAAAACGTGCAATGAAACAAGAAAAGCAGATCATGGACTTGGAATTAAAAATAGACAACCACCATCAGTCCCAGCATGATCAACTCGCATCTAAAATCGCGAGCCTCAAGGAACAAAATAAGGCGATAGTGAATTTGATCAAGAAAGCTTCTTTGCGGTCTGACAGACAATACAAATCAATGATGAATTACATCCACGCGGCCATCACAAGTCTCGTGCCCAAGCCTGCTAGTCCGCTTGAATTTAAGGATCCCCTTTCAGACACTGAATTGGACGCCACACCAAGACCTTCCAAAACGCTGCTATAA

Coding sequence (CDS)

ATGCAAGACCTCTGTGATACTGAATTTAAAGACTATAGAGAATCAGAGGACGCGACGTTAGCCCCTGAGTCGCAGCAAACCGTCTTTCTTGACGAGCTAGTTGATGACCCACTCCCCAAGGATAACCAAATAACCCTTGAGGAGGCTGGTGAGACGCGAGCTCCTTTGTCGTCAAAGCAAACTGAAAATCAACAAGGCAATGCGGCGGAAGAGAATGATGATGAAGAATTTTACAAGTACATTAATGAGGCAATCGCAAAGGCAATGATGGATGGACTTGAAGATATTTTTCAAAACCAAGCCAGTCTGCAAAAACGTGCAATGAAACAAGAAAAGCAGATCATGGACTTGGAATTAAAAATAGACAACCACCATCAGTCCCAGCATGATCAACTCGCATCTAAAATCGCGAGCCTCAAGGAACAAAATAAGGCGATAGTGAATTTGATCAAGAAAGCTTCTTTGCGGTCTGACAGACAATACAAATCAATGATGAATTACATCCACGCGGCCATCACAAGTCTCGTGCCCAAGCCTGCTAGTCCGCTTGAATTTAAGGATCCCCTTTCAGACACTGAATTGGACGCCACACCAAGACCTTCCAAAACGCTGCTATAA

Protein sequence

MQDLCDTEFKDYRESEDATLAPESQQTVFLDELVDDPLPKDNQITLEEAGETRAPLSSKQTENQQGNAAEENDDEEFYKYINEAIAKAMMDGLEDIFQNQASLQKRAMKQEKQIMDLELKIDNHHQSQHDQLASKIASLKEQNKAIVNLIKKASLRSDRQYKSMMNYIHAAITSLVPKPASPLEFKDPLSDTELDATPRPSKTLL

Homology

[Close]

BLAST of PI0025328 vs. ExPASy TrEMBL
Match: A0A5A7U0L9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00960 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 9.1e-12
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 50  GETRAPLSSKQTENQQGNAAEENDDEE-FYKYINEAIAKAMMDGLEDIFQNQASLQKRAM 109
           GET APL  KQ  NQQ NAA E+D+E+ ++K+I +   K +MDG +D+FQNQ  LQ+   
Sbjct: 12  GETHAPLPLKQINNQQKNAAGESDNEDHYFKFIGDTFGKPVMDGFKDVFQNQVDLQECTW 71

Query: 110 KQEKQIMDLELKIDN---HHQ 127
           + EKQI DLELKIDN   HHQ
Sbjct: 72  RHEKQIQDLELKIDNCNQHHQ 92

[Close]

BLAST of PI0025328 vs. ExPASy TrEMBL
Match: A0A5D3E1H0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00350 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-08
Identity = 43/120 (35.83%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 13  RESEDATLA-PESQQTVFLDELVDDPLPKDNQITLEEAGETRAPLSSKQ--------TEN 72
           +ESE+ TL          L++ +DDPL K  Q+  E+A +TR P   KQ        T+ 
Sbjct: 71  KESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQ 130

Query: 73  QQGNAAEENDDEEFYKYINEAIAKAMMDGLEDIFQNQASLQKRAMKQEKQIMDLELKIDN 124
           ++    +++DDE ++K+INE +++ +  G ED+FQ QA+LQ+  ++ +K + DLELK D+
Sbjct: 131 KEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQKPLQDLELKPDS 190

[Close]

BLAST of PI0025328 vs. ExPASy TrEMBL
Match: A0A5A7TJU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00130 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.1e-08
Identity = 43/120 (35.83%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 13  RESEDATLA-PESQQTVFLDELVDDPLPKDNQITLEEAGETRAPLSSKQ--------TEN 72
           +ESE+ TL          L++ +DDPL K  Q+  E+A +TR P   KQ        T+ 
Sbjct: 116 KESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQ 175

Query: 73  QQGNAAEENDDEEFYKYINEAIAKAMMDGLEDIFQNQASLQKRAMKQEKQIMDLELKIDN 124
           ++    +++DDE ++K+INE +++ +  G ED+FQ QA+LQ+  ++ +K + DLELK D+
Sbjct: 176 KEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQKPLQDLELKPDS 235

[Close]

BLAST of PI0025328 vs. ExPASy TrEMBL
Match: A0A5D3DS12 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00130 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.7e-08
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 74  DEEFYKYINEAIAKAMMDGLEDIFQNQASLQKRAMKQEKQIMDLELKIDN---HHQSQHD 133
           D+E++K+I     K M DG EDIFQ QA+LQ+  M+ +KQ+ +LEL+IDN    HQ+Q D
Sbjct: 11  DDEYFKFIKNNFGKPMRDGFEDIFQCQANLQE-GMRSQKQLQNLELRIDNKDLRHQAQLD 70

Query: 134 QLASKIASLKEQNKAIVNLIKKASLRSDR 160
            +   I SLK QN+A+  LIK+AS +++R
Sbjct: 71  IIEVDI-SLKTQNRALNTLIKRASSQTNR 97

[Close]

BLAST of PI0025328 vs. ExPASy TrEMBL
Match: A0A5D3DK59 (Gag-pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00780 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-07
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 0


Query: 16  EDATLAPESQQTVFLDELVDDPLPKDNQITLEEAGETRAPLSSKQTENQQGNAAEENDDE 75
           E+ATL          +E VDD L K  QI  E+ GE   P   KQT  QQ N   E+DDE
Sbjct: 42  EEATLEKWGVTKDVSEEPVDDSLLKGKQIAYEDIGEKHVPSPLKQTNEQQDNTTRESDDE 101

Query: 76  -EFYKYINEAIAKAMMDGLEDIFQNQASLQK 106
            +++K+I++   K MMD LEDIFQ Q+ LQ+
Sbjct: 102 DQYFKFISDTFGKPMMDELEDIFQIQSDLQE 132

[Close]

BLAST of PI0025328 vs. NCBI nr
Match: KAA0047757.1 (hypothetical protein E6C27_scaffold1059G00180 [Cucumis melo var. makuwa] >TYK02391.1 hypothetical protein E5676_scaffold155G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-11
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 50  GETRAPLSSKQTENQQGNAAEENDDEE-FYKYINEAIAKAMMDGLEDIFQNQASLQKRAM 109
           GET APL  KQ  NQQ NAA E+D+E+ ++K+I +   K +MDG +D+FQNQ  LQ+   
Sbjct: 12  GETHAPLPLKQINNQQKNAAGESDNEDHYFKFIGDTFGKPVMDGFKDVFQNQVDLQECTW 71

Query: 110 KQEKQIMDLELKIDN---HHQ 127
           + EKQI DLELKIDN   HHQ
Sbjct: 72  RHEKQIQDLELKIDNCNQHHQ 92

[Close]

BLAST of PI0025328 vs. NCBI nr
Match: TYK29776.1 (hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-08
Identity = 43/120 (35.83%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 13  RESEDATLA-PESQQTVFLDELVDDPLPKDNQITLEEAGETRAPLSSKQ--------TEN 72
           +ESE+ TL          L++ +DDPL K  Q+  E+A +TR P   KQ        T+ 
Sbjct: 71  KESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQ 130

Query: 73  QQGNAAEENDDEEFYKYINEAIAKAMMDGLEDIFQNQASLQKRAMKQEKQIMDLELKIDN 124
           ++    +++DDE ++K+INE +++ +  G ED+FQ QA+LQ+  ++ +K + DLELK D+
Sbjct: 131 KEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQKPLQDLELKPDS 190

[Close]

BLAST of PI0025328 vs. NCBI nr
Match: KAA0043584.1 (hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-08
Identity = 43/120 (35.83%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 13  RESEDATLA-PESQQTVFLDELVDDPLPKDNQITLEEAGETRAPLSSKQ--------TEN 72
           +ESE+ TL          L++ +DDPL K  Q+  E+A +TR P   KQ        T+ 
Sbjct: 116 KESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQ 175

Query: 73  QQGNAAEENDDEEFYKYINEAIAKAMMDGLEDIFQNQASLQKRAMKQEKQIMDLELKIDN 124
           ++    +++DDE ++K+INE +++ +  G ED+FQ QA+LQ+  ++ +K + DLELK D+
Sbjct: 176 KEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQKPLQDLELKPDS 235

[Close]

BLAST of PI0025328 vs. NCBI nr
Match: TYK26456.1 (hypothetical protein E5676_scaffold313G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 9.6e-08
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 74  DEEFYKYINEAIAKAMMDGLEDIFQNQASLQKRAMKQEKQIMDLELKIDN---HHQSQHD 133
           D+E++K+I     K M DG EDIFQ QA+LQ+  M+ +KQ+ +LEL+IDN    HQ+Q D
Sbjct: 11  DDEYFKFIKNNFGKPMRDGFEDIFQCQANLQE-GMRSQKQLQNLELRIDNKDLRHQAQLD 70

Query: 134 QLASKIASLKEQNKAIVNLIKKASLRSDR 160
            +   I SLK QN+A+  LIK+AS +++R
Sbjct: 71  IIEVDI-SLKTQNRALNTLIKRASSQTNR 97

[Close]

BLAST of PI0025328 vs. NCBI nr
Match: TYK23898.1 (gag-pol [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 4.8e-07
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 0


Query: 16  EDATLAPESQQTVFLDELVDDPLPKDNQITLEEAGETRAPLSSKQTENQQGNAAEENDDE 75
           E+ATL          +E VDD L K  QI  E+ GE   P   KQT  QQ N   E+DDE
Sbjct: 42  EEATLEKWGVTKDVSEEPVDDSLLKGKQIAYEDIGEKHVPSPLKQTNEQQDNTTRESDDE 101

Query: 76  -EFYKYINEAIAKAMMDGLEDIFQNQASLQK 106
            +++K+I++   K MMD LEDIFQ Q+ LQ+
Sbjct: 102 DQYFKFISDTFGKPMMDELEDIFQIQSDLQE 132

The following BLAST results are available for this feature:

BLAST of PI0025328 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0L9	9.1e-12	55.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E1H0	2.1e-08	35.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJU0	2.1e-08	35.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DS12	4.7e-08	48.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DK59	2.3e-07	45.05	Gag-pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00780 PE=4 S...	[more]

BLAST of PI0025328 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047757.1	1.9e-11	55.56	hypothetical protein E6C27_scaffold1059G00180 [Cucumis melo var. makuwa] >TYK023...	[more]
TYK29776.1	4.3e-08	35.83	hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa]	[more]
KAA0043584.1	4.3e-08	35.83	hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa]	[more]
TYK26456.1	9.6e-08	48.31	hypothetical protein E5676_scaffold313G00130 [Cucumis melo var. makuwa]	[more]
TYK23898.1	4.8e-07	45.05	gag-pol [Cucumis melo var. makuwa]	[more]

BLAST of PI0025328 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025328.1	PI0025328.1	mRNA