PI0025279 (gene) Melon (PI 482460) v1

Overview


Name	PI0025279
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase subunit
Location	chr03: 4998095 .. 5002110 (+)
RNA-Seq Expression	PI0025279
Synteny	PI0025279

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCATTAGGCCCAACCCTATGTAATGGTATATTCGAAAACAATGTGAAACTAAATTCTTTTGAAGGAAAAACATAAAAGAAGAAAAGCAAAACCCTACTTTCACCTTCTAGCCCCAGGCCTCCGTGACTCTTCACACTTACCTTTCTTCCCGGCTCGGCACCCGCCGCCGCCGCCGCTCGTTACTGGATCTCGCCCCGACAAGTCGTCTCTAGGTAAAATAGTAAACCATATTCATCGTTTCTCTTCCATCAATGATCGACTGAGCTTGGTTGCAATCGAAATTCTGATTTCCGACTGTTGGCTTCCGTCCGGTTCCAATTTCCGCGCGGTTCGATGAATATCCGCACATTCTAGCGGCCGGTTCGATCCATATTTTCTTTGCAAACCGGACCGAACCAGTTTACAGTGCTGCTCCCTGAGGGTTCTAGCTTCCAAAACCCAAAACCCAAAACCCAGGATGAAACCATCTTGTTTTCATTGTTCTGCTTTAGCAAGTTTTCTCTAAGTTCTATCATTGATCCATATCTCCGCCCATCTCTTCTCTCTTTGGCTAACTTTTCGACAAGAAATCTGTGAAACCTCTTTCTTGGGCTTCATTAATTTTAGCAGAAATATTGAACTATAGATGATAAATGGGCTAGTTTGAGGTTATCAAACCGATCAAATTGAGCTTACTACTTGTTATCTTTCGGATATCTGAATGACCTATCTTGGTTGTTCTTTTGATACATTAGGATCGTTTTGATCTATTGTGGGTATGAGTTCCTTCATGCTTTTCCATTGAGGTTTTAGTTTATTGATTGGTTCTAGGTTTTTTGAAATGGAAACAAAATTTGAGAATTGACTGGTTCTAGATGAAGCTCCAATTTCTCCTATAACTTTGTAGATTTCCTCCAATTAACTTCTTCAGCAGCCTATTTTCCGTGGGAACTCTGTTTACCCAAATCCCCTTTTGGCTATTACAATTCTACCACCCTTTTTAGCCCCAATTTTCCGGTCTTTTAGAGTGTTAGCAATTTTTTACTCTCTTCTTTGTTGTACTTGAACTTCTTATGGTTATTCTAACTCTTTTTTTTTTTTTTAACATTGTTAGTTAGGAAGCTATTGGGGAAGCAGCAAGAGCCACTCATGGCTTATTCTCGTGGACATGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCTGCTCAACGAAATATGTTGAGTGTCCTTTGTGCAAGTCTAGGCGAAGTGCAAAAGGTGGACATAAACATTGGATTTAAGCTTATTGCATTGTAGTTATTTGCTTTTAGTTTTTTGTTTTGGATAATTTAGACATTCCAACACTCGTTACGTGTACGAATCGGGTATGTCTTGCTACAAGTAAACTTTGTTTTTATCTTATTAAATTGTCGTTTAGTTCATTTTTCCTTCATGTTTATCTGAGAAAAATGTGAAAAGCATCGTCTATTTTTCCATTTCCTATCTTGAGTTTCTGTTTTTCATTTTAATATTTTTACTAGAATAGATGGTGTCTGGGTTGTGCAGGTTGGTTGTTCTTAATCTATCAACTTAACTTTTTTTTAAAGAAACTTCTTGTAGATAGGAGAGTAAGAGTTTCTATATGGGAATTTGCAGCATCTTCTGCTTTGAGTGTTCAGCTTTGAAAACATGGTTTCTTACGCAACATTAGTGTTCAACAGGAGTGGTTCGCAGGATTTCTATTTGAGAAGGTTACCGCTGCTGATTGCTTGTGCATTTTGGTTTGAACCAAAGCATAGATAAGTTGACTATCATTATTTTGATGAAAAGCTAGCTTCCATTAGGATGGATGATTGTAAAAAAAAAAAAAAAAACTATCTCAAATAGGACACAAAGAAGCTTCCGCTTAGATTAAGCAGTTGAAGCCATCTGCGGATAAAAAAAAGGGTGAAAGATGATCCCTTGATGTGGCCAAACCTTTCATTTAGTTTTGCTATTCAGAAAAGAACCAAGAAGTCCACAGACGAGAGTCATCTTTTAATTCATATTATCATCCTCTACAACACATTACCCCTAAGGATTGAGTATAATTTGGAACGATACAGCAAAAGCCAAAGAAAATTTTGAGATGATTTTAGAGAGATAGTTTTGAACCTATTTTCAAACATTTATCTAGAATTTTGTAAGAGCCCATAGCTAGGGAAGCTTGTGGGTCTATTGCCTTTCACTTCCTTGCCGTCATCCTTAGCCATAAAGGCAGTATAAATCTTGGAAAATTCACATCGAGAATTCTTTTCTTAAAGAAGCCTAGTTGTTGACATGGTATCATGCTTGAGAGTATCCCAATAGTAATATATTTTCCCCCTTCTCCCACACACAGACACCCTATATAACGACTCACAGCAGGCCTTACTAACAGCCAACATTCCTACGGGCCCACCTACAACACCCTCATATTACCATACTACCCTTTACATAATATTCCCATTCTTTCTTGCATTTCTCCTAACATAAACCTTAGTGATCGGGGGCCTATCAGGCTTTTACTCATCCCCCCATACACTATCGTTCTTGGTAGTATTGCGCCTAAGATGTGTGACATATTGGTGGTGGCTAATCATAAAGCTCATCCATAAGAATACCTGGACGGAAATAACACGTTTTATTTATGAATAAAATCGAATATCTCCCGACTACAATTACATGGTGAAAGGACTGAACTAACCATTAGTGCATGTGGAACCAAATTCTAACTACTAACAGCTGAGCAGAAACTGTAACATATCAAACTCATTTAAATTTTCAGGCTGGTTACTCGTCTTATCCAAGGGCCCAAGTGCCATCATGATTTCCGTCAATGTTATTCAATTATACATCTTGAAATTGGTGTTCTGAAGGGCGTATACCAAATTATTTTAGAAGTTGATGTTATGCTTTCATGATTGGAGATATTGAACGAGCAAATGCAATTGAGAAACTACTGTTTTAATATGTTATGCACTCTTTTATTTGGCATTTCTAACCGAATTCTCGTGGCCTATTTCAGAGATCATCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGTATGCCTTTTGAATCATAAACATTATCCCCATGCTTTCTAGGTCTAAGGCACACTATCCTCTCTGCAACACACCATTACCAATGCTTTTGAACTTTAGCATTCTCTTATAATTTTTGCTACTTTTATGATGCTTGCTAGGATTGTTTCTGGATTAATTATTTGTGGATTGTGAGAAGGGCTTAAACAGCTATCTGTATAATGTTCTCTAGGTCTAGGCAAATCAATAAACCAGACCCTGGAAATTCTTATTGAGTTGAACATCTGGAACCGTGAAAATTTTTTTAGTATTAGCAAACGTTCATATGATCTAATCTTGATATGATGTCCCCTTTTATTTGGTTGTCAGATATCAAAGAAATGTTTCGATTTTGAAATCCTCGTGTGACAATTTGCAGGAAATTAGAAAGCAGTTGGGAATTTCTTTAATTGATGAAGAGAAAATGCAGCTAGCAAAGGTAGTAGGAGAAAATAAGGTGTATGGTATTCGATTTTGCTTTTAGTCCACTAATATGGAGCTGTGTGATGTTTGACAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACACTTTACAAATATTAACCAAATTATAATTGTGGGTTATTTAGGGTTTATTTCTGTCTTTTTTTCCATTAGAAAGAGTCGTAAGTTTGAGTGTGGTTTGAATAAAAATGCAGATGAGATCGGCTGATGAAGGGCAGACCACATTTTATACCTGCACTAAATGCCATCATCAGACTAGAGAGAATTGATCTTCCATATGATTTTTTTTAGGATGTCAGATTCAATATCCTTGAATAGTTGGGTGGTTCCATTGGAATCCAAAAGCTTTAACATGATGAATTATGTTCTTAAACAATTAAACTTGATCATTATGGGATGATTCACTCCATTTGAAAATATGACGAAGTAGCAAAATTTGTTGATT

mRNA sequence

GTTTCATTAGGCCCAACCCTATGTAATGGTATATTCGAAAACAATGTGAAACTAAATTCTTTTGAAGGAAAAACATAAAAGAAGAAAAGCAAAACCCTACTTTCACCTTCTAGCCCCAGGCCTCCGTGACTCTTCACACTTACCTTTCTTCCCGGCTCGGCACCCGCCGCCGCCGCCGCTCGTTACTGGATCTCGCCCCGACAAGTCGTCTCTAGTTAGGAAGCTATTGGGGAAGCAGCAAGAGCCACTCATGGCTTATTCTCGTGGACATGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCTGCTCAACGAAATATGTTGAGTGTCCTTTGTGCAAGTCTAGGCGAAGTGCAAAAGAGATCATCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCTTTAATTGATGAAGAGAAAATGCAGCTAGCAAAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCGGCTGATGAAGGGCAGACCACATTTTATACCTGCACTAAATGCCATCATCAGACTAGAGAGAATTGATCTTCCATATGATTTTTTTTAGGATGTCAGATTCAATATCCTTGAATAGTTGGGTGGTTCCATTGGAATCCAAAAGCTTTAACATGATGAATTATGTTCTTAAACAATTAAACTTGATCATTATGGGATGATTCACTCCATTTGAAAATATGACGAAGTAGCAAAATTTGTTGATT

Coding sequence (CDS)

ATGGCTTATTCTCGTGGACATGACTTCTTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCTGCTCAACGAAATATGTTGAGTGTCCTTTGTGCAAGTCTAGGCGAAGTGCAAAAGAGATCATCGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGAAAGCAGTTGGGAATTTCTTTAATTGATGAAGAGAAAATGCAGCTAGCAAAGGAAAGGAGAAGATGTGAAAAATGTGGAAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCGGCTGATGAAGGGCAGACCACATTTTATACCTGCACTAAATGCCATCATCAGACTAGAGAGAATTGA

Protein sequence

MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN

Homology

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BLAST of PI0025279 vs. ExPASy Swiss-Prot
Match: Q5TM50 (DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=POLR1H PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 8   DFLFCNLCGTMLSFCSTK-YVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDE 67
           D  FC+ CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 68  EKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]

BLAST of PI0025279 vs. ExPASy Swiss-Prot
Match: Q1RMP0 (DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-10
Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 8   DFLFCNLCGTMLSFCSTK-YVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDE 67
           D  FC  CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 13  DLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLSMEEG 72

Query: 68  EKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 73  PEFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 122

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BLAST of PI0025279 vs. ExPASy Swiss-Prot
Match: Q9P1U0 (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=POLR1H PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 8   DFLFCNLCGTMLSFCSTK-YVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDE 67
           D  FC+ CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 68  EKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]

BLAST of PI0025279 vs. ExPASy Swiss-Prot
Match: Q1XHV8 (DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=POLR1H PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 8   DFLFCNLCGTMLSFCSTK-YVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGISLIDE 67
           D  FC+ CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 68  EKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

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BLAST of PI0025279 vs. ExPASy Swiss-Prot
Match: O94703 (DNA-directed RNA polymerase I subunit RPA12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa12 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.0e-10
Identity = 33/111 (29.73%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 10  LFCNLCGTMLSFCSTKYVECPLCK----SRRSAKEIIGREISYTVTAEEIRKQLGISLID 69
           +FC+ CG +L   + ++  C  C+    S + A  ++  + S +     ++ +  I  ++
Sbjct: 8   IFCSECGNLLESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSIVQVE 67

Query: 70  EEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            +K + A    +C KCGND   F + Q+RSADEG T FY C +C ++   N
Sbjct: 68  SQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTN 118

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BLAST of PI0025279 vs. ExPASy TrEMBL
Match: A0A0A0LKC4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.1e-59
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFCSTKYVECP CKSRRSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of PI0025279 vs. ExPASy TrEMBL
Match: A0A1S3BBZ4 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.6e-58
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLI EEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of PI0025279 vs. ExPASy TrEMBL
Match: A0A6J1CTE6 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014043 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.6e-58
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEK+QL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of PI0025279 vs. ExPASy TrEMBL
Match: A0A6J1KC19 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.6e-58
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYVECPLCKSRRSAK IIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKGIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of PI0025279 vs. ExPASy TrEMBL
Match: A0A6J1HDS4 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111463020 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.7e-58
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYS GHDFLFCNLCGTMLSF STKYVECPLCKSRRSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSGGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of PI0025279 vs. NCBI nr
Match: XP_004143007.1 (DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031736324.1 DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031736325.1 DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031736326.1 DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >KGN62253.1 hypothetical protein Csa_018548 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 2.3e-59
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFCSTKYVECP CKSRRSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of PI0025279 vs. NCBI nr
Match: KAG6598510.1 (DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.1 bits (601), Expect = 1.5e-58
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYVECPLCKSRRSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 31  MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 90

Query: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 91  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 146

[Close]

BLAST of PI0025279 vs. NCBI nr
Match: XP_023546814.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >KAG7029447.1 DNA-directed RNA polymerase I subunit RPA12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.1 bits (601), Expect = 1.5e-58
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYVECPLCKSRRSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of PI0025279 vs. NCBI nr
Match: XP_008445334.1 (PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445336.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445337.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_008445338.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo])

HSP 1 Score: 235.0 bits (598), Expect = 3.4e-58
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLI EEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of PI0025279 vs. NCBI nr
Match: XP_022144336.1 (DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_022144337.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia])

HSP 1 Score: 235.0 bits (598), Expect = 3.4e-58
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEK+QL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]

BLAST of PI0025279 vs. TAIR 10
Match: AT3G25940.1 (TFIIB zinc-binding protein )

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-31
Identity = 67/118 (56.78%), Postives = 87/118 (73.73%), Query Frame = 0


Query: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
           M  SR  +FLFCNLCGTML   STKY ECP CK+ R+AK+II +EI+YTV+AE+IR++LG
Sbjct: 1   MEKSRESEFLFCNLCGTMLVLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELG 60

Query: 61  ISLIDEE---KMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
           ISL  E+   + +L K ++ CEKC + E  + +RQ RSADEGQTT+YTC  C H+  E
Sbjct: 61  ISLFGEKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118

[Close]

BLAST of PI0025279 vs. TAIR 10
Match: AT1G20065.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). )

HSP 1 Score: 84.7 bits (208), Expect = 5.2e-17
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60
          M  SR  D LFCNLCGTML   STKY ECPLC++ R+ KEII + ++YTVT E+IR++LG
Sbjct: 1  MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTEDIRRELG 60

Query: 61 IS 63
          IS
Sbjct: 61 IS 62

[Close]

BLAST of PI0025279 vs. TAIR 10
Match: AT1G20065.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: TFIIB zinc-binding protein (TAIR:AT3G25940.1). )

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-13
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 1  MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSRRSAKEIIGREISYTVTAE 54
          M  SR  D LFCNLCGTML   STKY ECPLC++ R+ KEII + ++YTVT E
Sbjct: 1  MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTE 53

[Close]

BLAST of PI0025279 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 52.0 bits (123), Expect = 3.8e-07
Identity = 35/114 (30.70%), Postives = 55/114 (48.25%), Query Frame = 0


Query: 11  FCNLCGTMLS---------FCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGI 70
           FC  CG +L          FCST    CP     +   EI  +++        ++K +  
Sbjct: 3   FCPTCGNLLRYEGGGNSRFFCST----CPYVAYIQRQVEIKKKQLL-------VKKSIEA 62

Query: 71  SLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
            +  ++    A+    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Sbjct: 63  VVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

[Close]

BLAST of PI0025279 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 52.0 bits (123), Expect = 3.8e-07
Identity = 35/114 (30.70%), Postives = 55/114 (48.25%), Query Frame = 0


Query: 11  FCNLCGTMLS---------FCSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLGI 70
           FC  CG +L          FCST    CP   +     EI  +++        ++K +  
Sbjct: 3   FCPTCGNLLRYEGGGSSRFFCST----CPYVANIERRVEIKKKQLL-------VKKSIEP 62

Query: 71  SLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
            +  ++    A+    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Sbjct: 63  VVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

The following BLAST results are available for this feature:

BLAST of PI0025279 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5TM50	1.2e-10	33.64	DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=POLR1H ...	[more]
Q1RMP0	1.6e-10	33.64	DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=POLR1H PE=2...	[more]
Q9P1U0	2.1e-10	33.64	DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=POLR1H PE...	[more]
Q1XHV8	2.1e-10	33.64	DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=POLR1H...	[more]
O94703	6.0e-10	29.73	DNA-directed RNA polymerase I subunit RPA12 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of PI0025279 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKC4	1.1e-59	98.28	DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 P...	[more]
A0A1S3BBZ4	1.6e-58	97.41	DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3...	[more]
A0A6J1CTE6	1.6e-58	97.41	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110140...	[more]
A0A6J1KC19	3.6e-58	97.41	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111492509 ...	[more]
A0A6J1HDS4	4.7e-58	96.55	DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11146302...	[more]

BLAST of PI0025279 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143007.1	2.3e-59	98.28	DNA-directed RNA polymerase I subunit RPA12 isoform X1 [Cucumis sativus] >XP_031...	[more]
KAG6598510.1	1.5e-58	97.41	DNA-directed RNA polymerase I subunit RPA12, partial [Cucurbita argyrosperma sub...	[more]
XP_023546814.1	1.5e-58	97.41	DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo] >K...	[more]
XP_008445334.1	3.4e-58	97.41	PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cucumis melo] >XP_0...	[more]
XP_022144336.1	3.4e-58	97.41	DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_02214...	[more]

BLAST of PI0025279 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25940.1	1.7e-31	56.78	TFIIB zinc-binding protein	[more]
AT1G20065.1	5.2e-17	62.90	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G20065.2	2.7e-13	62.26	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G01210.1	3.8e-07	30.70	DNA-directed RNA polymerase, subunit M, archaeal	[more]
AT4G07950.1	3.8e-07	30.70	DNA-directed RNA polymerase, subunit M, archaeal	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 76..115 e-value: 3.7E-12 score: 56.4
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 77..112 e-value: 8.5E-16 score: 57.5
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 74..114 score: 12.826397
IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	PIRSF	PIRSF005586	RNApol_RpoM	coord: 9..116 e-value: 3.7E-26 score: 89.8
IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	PANTHER	PTHR11239	DNA-DIRECTED RNA POLYMERASE	coord: 1..114
None	No IPR available	GENE3D	2.20.25.10		coord: 62..116 e-value: 9.1E-17 score: 62.3
None	No IPR available	PANTHER	PTHR11239:SF19	DNA-DIRECTED RNA POLYMERASE SUBUNIT	coord: 1..114
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 55..116
IPR034004	Pol I subunit A12, C-terminal zinc ribbon	CDD	cd10507	Zn-ribbon_RPA12	coord: 76..116 e-value: 2.40242E-20 score: 75.3172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025279.2	PI0025279.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006379	mRNA cleavage
biological_process	GO:0006363	termination of RNA polymerase I transcription
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding