Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCGGTCTTCCAACCAAGAACTTCACTTTTTCGAAGACCTAAATAGGGAAGTGCGTAGGATTAGGAGAGAAAGGAGAGAAGAAACCATTCATAATTTTCCTCGAGATCCAATAGAAAACCTAGAGCCTAATCTAGAGCATCCAAACCTTGATAGAGAAAACATGGGGCAAGTTAGAGAAAAAACCTTAAGAGAGCTTTCCGAGCCCGATGAGGACCAAAGACCCCTCTGTATAGTAATTCCCCCAACCACTCAACCCTTTGAACTCAAACCCGGACTAATTCACCTATTACCAATCTATAAGGATAGTTTAGGAGAGGACCCCCATAAACATTTTAAGGACTTTCACATGGTTTGTGACTCTATGAGACTGCACGGAGTCTCAGAGGAGCAACTTAATTTGAGAGCCTTCCCCTTTTCTTTAACTGACACAGCCAAAAGATGGCTTTACTATCTAGAGCCAGGGTCCATCACAACTTGGGGTAGCCTTAAGAAAAAATTCATAGAAAAATTCTTTCCCGCCTCTAGAGCAAATAATATTAGGAAAGAGATATATGGAACAGGCAAGCTTTTTGGGAGTCTTTGTCTGAATACTGGGAAAGGTTTAAGGAACTTTGCGTTAGTTTCCCCCATCACCATATTTCAGACCCATCACTAATCCAATATTTCTATTCTGGACTACTAACTATGGATAGAAATACAGTAGACGCTGCGGCAGGAGGTGCATTAGCTGACAAAACCCCTACTGAGGCGAGAGAGCTCATTTCAAGGATGACAGAAAATTCACAGAACTTTGGAAATAGGACATCCGAGCTCGACAATTCATTAACTAAGGAGGTAAGTGAACTTAAATTACAAATGCTTAATATGACTACGCTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAGGTTGCTAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTACCCTGACTTAGTTGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCATAGCAACACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGAGAAACGACAACCAAAGACCCTCACAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTTTTACTACTAATACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATATGACCAATGCAATAAGCAAGCTAGAAGGTAAAGGCAAACTTCTGGCTCAGCCAGATCATGCTAATGTAAGTGCCATCTCACTTAGAAGCGGTAAGATTCTGGAAACCCCTTTAAGTGAAGAGAAGGTAACTTCTACCCCTATCCTTCTAGAAAATACAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCTAGCTCTAAAGGTAAATCTCATATTTTAGATTATTCTCCATACATCCCTGGTTCTCAAAAATCACTTCGTAAATATGGGATTAGGTTCTAA
mRNA sequence
ATGACCCGGTCTTCCAACCAAGAACTTCACTTTTTCGAAGACCTAAATAGGGAAGTGCGTAGGATTAGGAGAGAAAGGAGAGAAGAAACCATTCATAATTTTCCTCGAGATCCAATAGAAAACCTAGAGCCTAATCTAGAGCATCCAAACCTTGATAGAGAAAACATGGGGCAAGTTAGAGAAAAAACCTTAAGAGAGCTTTCCGAGCCCGATGAGGACCAAAGACCCCTCTGTATAGTAATTCCCCCAACCACTCAACCCTTTGAACTCAAACCCGGACTAATTCACCTATTACCAATCTATAAGGATAGTTTAGGAGAGGACCCCCATAAACATTTTAAGGACTTTCACATGGTTTGTGACTCTATGAGACTGCACGGAGTCTCAGAGGAGCAACTTAATTTGAGAGCCTTCCCCTTTTCTTTAACTGACACAGCCAAAAGATGGCTTTACTATCTAGAGCCAGGGTCCATCACAACTTGGGGTAGCCTTAAGAAAAAATTCATAGAAAAATTCTTTCCCGCCTCTAGAGCAAATAATATTAGGAAAGAGATATATGGAACAGGCAAGCTTTTTGGGAGTCTTTGTCTGAATACTGGGAAAGACGCTGCGGCAGGAGGTGCATTAGCTGACAAAACCCCTACTGAGGCGAGAGAGCTCATTTCAAGGATGACAGAAAATTCACAGAACTTTGGAAATAGGACATCCGAGCTCGACAATTCATTAACTAAGGAGGTAAGTGAACTTAAATTACAAATGCTTAATATGACTACGCTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAGGTTGCTAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTACCCTGACTTAGTTGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCATAGCAACACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGAGAAACGACAACCAAAGACCCTCACAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTTTTACTACTAATACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATATGACCAATGCAATAAGCAAGCTAGAAGGTAAAGGCAAACTTCTGGCTCAGCCAGATCATGCTAATGTAAGTGCCATCTCACTTAGAAGCGGTAAGATTCTGGAAACCCCTTTAAGTGAAGAGAAGGTAACTTCTACCCCTATCCTTCTAGAAAATACAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCTAGCTCTAAAGGTAAATCTCATATTTTAGATTATTCTCCATACATCCCTGGTTCTCAAAAATCACTTCGTAAATATGGGATTAGGTTCTAA
Coding sequence (CDS)
ATGACCCGGTCTTCCAACCAAGAACTTCACTTTTTCGAAGACCTAAATAGGGAAGTGCGTAGGATTAGGAGAGAAAGGAGAGAAGAAACCATTCATAATTTTCCTCGAGATCCAATAGAAAACCTAGAGCCTAATCTAGAGCATCCAAACCTTGATAGAGAAAACATGGGGCAAGTTAGAGAAAAAACCTTAAGAGAGCTTTCCGAGCCCGATGAGGACCAAAGACCCCTCTGTATAGTAATTCCCCCAACCACTCAACCCTTTGAACTCAAACCCGGACTAATTCACCTATTACCAATCTATAAGGATAGTTTAGGAGAGGACCCCCATAAACATTTTAAGGACTTTCACATGGTTTGTGACTCTATGAGACTGCACGGAGTCTCAGAGGAGCAACTTAATTTGAGAGCCTTCCCCTTTTCTTTAACTGACACAGCCAAAAGATGGCTTTACTATCTAGAGCCAGGGTCCATCACAACTTGGGGTAGCCTTAAGAAAAAATTCATAGAAAAATTCTTTCCCGCCTCTAGAGCAAATAATATTAGGAAAGAGATATATGGAACAGGCAAGCTTTTTGGGAGTCTTTGTCTGAATACTGGGAAAGACGCTGCGGCAGGAGGTGCATTAGCTGACAAAACCCCTACTGAGGCGAGAGAGCTCATTTCAAGGATGACAGAAAATTCACAGAACTTTGGAAATAGGACATCCGAGCTCGACAATTCATTAACTAAGGAGGTAAGTGAACTTAAATTACAAATGCTTAATATGACTACGCTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAGGTTGCTAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTACCCTGACTTAGTTGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCATAGCAACACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGAGAAACGACAACCAAAGACCCTCACAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTTTTACTACTAATACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATATGACCAATGCAATAAGCAAGCTAGAAGGTAAAGGCAAACTTCTGGCTCAGCCAGATCATGCTAATGTAAGTGCCATCTCACTTAGAAGCGGTAAGATTCTGGAAACCCCTTTAAGTGAAGAGAAGGTAACTTCTACCCCTATCCTTCTAGAAAATACAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCTAGCTCTAAAGGTAAATCTCATATTTTAGATTATTCTCCATACATCCCTGGTTCTCAAAAATCACTTCGTAAATATGGGATTAGGTTCTAA
Protein sequence
MTRSSNQELHFFEDLNREVRRIRRERREETIHNFPRDPIENLEPNLEHPNLDRENMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHFKDFHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFFPASRANNIRKEIYGTGKLFGSLCLNTGKDAAAGGALADKTPTEARELISRMTENSQNFGNRTSELDNSLTKEVSELKLQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQNEMKQQMSHMTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPLSEEKVTSTPILLENTDEKKEEKLETSSLPSSSKGKSHILDYSPYIPGSQKSLRKYGIRF
Homology
BLAST of PI0025174 vs. ExPASy TrEMBL
Match:
A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)
HSP 1 Score: 607.4 bits (1565), Expect = 4.8e-170
Identity = 327/492 (66.46%), Postives = 379/492 (77.03%), Query Frame = 0
Query: 1 MTRSSNQELHFFEDLNREVRRIRRERREETIHNFP----RDPIENLEPNLE---HPNLDR 60
MTRSSN E +FEDLN+EVRRIRRERREE +N P ++P+ LEP+L+ PNL R
Sbjct: 1 MTRSSNLEFPYFEDLNKEVRRIRRERREE--NNIPNLSNQEPLRGLEPSLDSPLDPNLGR 60
Query: 61 ENMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHF 120
NMG+VREKT+R+L E DEDQRPLCIVI TTQPFELKP LIHLLPI+K + GEDPHKH
Sbjct: 61 GNMGEVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHL 120
Query: 121 KDFHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFF 180
KDFHMVCDSMR HG+SEEQLNLRAFPFSLTD AKRWLYYLEPGSITTWGSLKKKF+EKFF
Sbjct: 121 KDFHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFF 180
Query: 181 PASRANNIRKEIYGTGKLFG-----------SLCLN------------------------ 240
PASR NNIRKEIYG + FG LC N
Sbjct: 181 PASRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDR 240
Query: 241 TGKDAAAGGALADKTPTEARELISRMTENSQNFGNRTSELDNSLTKEVSELKLQMLNMTT 300
DAAAGGALA+K PTEARELISRM +NSQ FGNR SEL+NSLTKEVSELK QMLNMTT
Sbjct: 241 NTVDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTT 300
Query: 301 LLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEANVIRKYDPHSNTYNAGWRDNPNLR 360
LLTSFVQG +KV KC VCGLVGHPNDK P+++EE N+++KYDP+SNTYN GWRDNP LR
Sbjct: 301 LLTSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILR 360
Query: 361 WRNDNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQNEMKQQMSHMTNAISKLEGKGKL 420
W NDNQ+ +QA ++S+NQ TNL+D++KA TNT+SFQ EMKQQM+ +T ISK++GKGKL
Sbjct: 361 WGNDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKL 420
Query: 421 LAQPDHANVSAISLRSGKILETP-LSEEKVTSTPILLENTDEKKEEKLETS-SLPSSSKG 449
AQP+HANVS ISLRSGKIL+TP E+KVTS P+ L + +E KEEK+ET+ SL +
Sbjct: 421 PAQPNHANVSVISLRSGKILDTPSTKEKKVTSIPLPLNSKNESKEEKVETNPSLSNPKND 480
BLAST of PI0025174 vs. ExPASy TrEMBL
Match:
A0A5A7VQ60 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00030 PE=4 SV=1)
HSP 1 Score: 512.3 bits (1318), Expect = 2.1e-141
Identity = 289/458 (63.10%), Postives = 338/458 (73.80%), Query Frame = 0
Query: 1 MTRSSNQELHFFEDLNREVRRIRRERREETIHNFP----RDPIENLEPNLE---HPNLDR 60
MTRSSN E +FEDLNREVRRIRRERREE ++ P ++P+ LEP+L+ PNL R
Sbjct: 1 MTRSSNLEFPYFEDLNREVRRIRRERREE--NSIPSLSNQEPLRGLEPSLDSPLDPNLGR 60
Query: 61 ENMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHF 120
NM +VREKTLREL+E DE+QRPLCIVIPPTTQPFELKPGLIHLLPI+K S GEDPHKH
Sbjct: 61 GNMSEVREKTLRELAELDENQRPLCIVIPPTTQPFELKPGLIHLLPIFKGSPGEDPHKHL 120
Query: 121 KDFHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFF 180
KDFHMV DSMR HG+SEEQLNLRAF F L
Sbjct: 121 KDFHMVFDSMRPHGISEEQLNLRAFLFPL------------------------------- 180
Query: 181 PASRANNIRKEIYGTGKLFGSLCLNTGKDAAAGGALADKTPTEARELISRMTENSQNFGN 240
R N + DAA G ALADKTPTEARELISRM +N Q+FGN
Sbjct: 181 ---RMNTV--------------------DAAVGRALADKTPTEARELISRMAKNFQSFGN 240
Query: 241 RTSELDNSLTKEVSELKLQMLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVE 300
R SE DNSLTKEVSELK QMLNM TTLLTSFVQG +KV KCGVCGLVGH N+K P+++E
Sbjct: 241 RASEFDNSLTKEVSELKSQMLNMTTTLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIE 300
Query: 301 EANVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKAFTTNTI 360
+ N++R+YDPHSNTYN+GWRDNPNLRW NDNQ+ +QA S+S+NQGTNLED++KA TNT+
Sbjct: 301 DVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTL 360
Query: 361 SFQNEMKQQMSHMTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPLS-EEKVTSTP 420
SFQ EMKQQM+ +T AISK++GKGKL AQ DHANVSAISLRSGKIL+TP + E+KVTS P
Sbjct: 361 SFQQEMKQQMTQLTTAISKMDGKGKLPAQLDHANVSAISLRSGKILDTPTTKEKKVTSKP 402
Query: 421 ILLENTDEKKEEKLETSSLPSSSKG-KSHILDYSPYIP 449
+ L + +E KEEK+ET+ PS+SK KS + D++PYIP
Sbjct: 421 LPLNSKNESKEEKVETNPSPSNSKNDKSPLNDFTPYIP 402
BLAST of PI0025174 vs. ExPASy TrEMBL
Match:
A0A5D3C1D3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00200 PE=4 SV=1)
HSP 1 Score: 478.0 bits (1229), Expect = 4.4e-131
Identity = 259/429 (60.37%), Postives = 301/429 (70.16%), Query Frame = 0
Query: 26 RREETIHN-FPRDPIENLEPNLE---HPNLDRENMGQVREKTLRELSEPDEDQRPLCIVI 85
R E I N + + P+ LEP+L+ PNL R NMG+VREK LREL EPDEDQRPLCI+I
Sbjct: 2 REENNILNLYNQQPLRGLEPSLDSPLDPNLGRGNMGEVREKNLRELVEPDEDQRPLCIII 61
Query: 86 PPTTQPFELKPGLIHLLPIYKDSLGEDPHKHFKDFHMVCDSMRLHGVSEEQLNLRAFPFS 145
PPTTQPFELK GLIHLLPI+K S GEDPHKH KDF+MVCDSMRLHG+S+EQLNLRAFPFS
Sbjct: 62 PPTTQPFELKSGLIHLLPIFKGSFGEDPHKHHKDFYMVCDSMRLHGISKEQLNLRAFPFS 121
Query: 146 LTDTAKRWLYYLEPGSITTWGSLKKKFIEKFFPASRANNIRKEIYGTGKLFGSLCLNTGK 205
L D AKRWLYYLEPGSITTW
Sbjct: 122 LMDVAKRWLYYLEPGSITTW---------------------------------------- 181
Query: 206 DAAAGGALADKTPTEARELISRMTENSQNFGNRTSELDNSLTKEVSELKLQMLNMTTLLT 265
DAAAGGALADKTP EARELISRMTE SQ+FGNR SELDNSLTK
Sbjct: 182 DAAAGGALADKTPIEARELISRMTEISQSFGNRASELDNSLTK----------------- 241
Query: 266 SFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWRN 325
CGVCGLVGHPNDK P+++ + N+++KYDPH NTYN+GWRDNPNLRW N
Sbjct: 242 -----------VCGVCGLVGHPNDKCPEVISDVNIVQKYDPHGNTYNSGWRDNPNLRWGN 301
Query: 326 DNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQNEMKQQMSHMTNAISKLEGKGKLLAQ 385
DNQ+ +QA +S+NQGTNLED++KA TNT+SFQ EMKQQM+ +T AISK++GKGKL Q
Sbjct: 302 DNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLTDQ 361
Query: 386 PDHANVSAISLRSGKILET-PLSEEKVTSTPILLENTDEKKEEKLETSSLPSSSKG-KSH 445
P+HANVS ISLRSGKIL+T E+KVTS P+ L + +E KEEK+ET+ PS SK K
Sbjct: 362 PNHANVSTISLRSGKILDTLTTKEKKVTSKPLPLNSKNESKEEKIETNPSPSKSKNDKPP 362
Query: 446 ILDYSPYIP 449
+ D++PYIP
Sbjct: 422 LNDFTPYIP 362
BLAST of PI0025174 vs. ExPASy TrEMBL
Match:
A0A5A7V1C6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003360 PE=4 SV=1)
HSP 1 Score: 471.5 bits (1212), Expect = 4.1e-129
Identity = 240/351 (68.38%), Postives = 272/351 (77.49%), Query Frame = 0
Query: 56 MGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHFKD 115
MG+VREKTLREL EPDEDQRPLC+VIPPTTQPFELK GLIHLLPI+K S GEDP+KH KD
Sbjct: 1 MGEVREKTLRELVEPDEDQRPLCVVIPPTTQPFELKLGLIHLLPIFKGSSGEDPYKHLKD 60
Query: 116 FHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFFPA 175
FHMVCDSMR HG+SEEQLNLRAFPFSLTD KRWLYYLEP
Sbjct: 61 FHMVCDSMRPHGISEEQLNLRAFPFSLTDVVKRWLYYLEP-------------------- 120
Query: 176 SRANNIRKEIYGTGKLFGSLCLNTGKDAAAGGALADKTPTEARELISRMTENSQNFGNRT 235
DA AG ALADKTPT+A ELISRM ENSQ+FGNR
Sbjct: 121 -------------------------VDAVAGEALADKTPTKAGELISRMAENSQSFGNRA 180
Query: 236 SELDNSLTKEVSELKLQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEAN 295
ELDNSLTKEVSELK QMLNMTTLLTSFVQG +KV KCGVCGLVGHPNDK P+++E+ N
Sbjct: 181 LELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVN 240
Query: 296 VIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQ 355
++R+YDPH NTYN+ WRDNPNLRW NDNQ+ +QA S+S+NQGTNL+D++KA TNT+SFQ
Sbjct: 241 IVRRYDPHGNTYNSRWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLKDIIKALVTNTLSFQ 300
Query: 356 NEMKQQMSHMTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPLSEEK 407
EMKQQM+ +T AISK++GKGKLLAQP+H NVSAI LRSGKIL+TP ++EK
Sbjct: 301 QEMKQQMTQLTTAISKMDGKGKLLAQPEHDNVSAILLRSGKILDTPTTKEK 306
BLAST of PI0025174 vs. ExPASy TrEMBL
Match:
A0A5D3DIP6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00340 PE=4 SV=1)
HSP 1 Score: 463.8 bits (1192), Expect = 8.6e-127
Identity = 274/490 (55.92%), Postives = 317/490 (64.69%), Query Frame = 0
Query: 1 MTRSSNQELHFFEDLNREVRRIRRERREE-TIHNFP-RDPIENLEPNLE---HPNLDREN 60
MTRSSN + +FEDLNREVRRIRRERREE +IHN ++P+ LEP+L+ PNL R N
Sbjct: 1 MTRSSNLKFSYFEDLNREVRRIRRERREENSIHNLSNQEPLRGLEPSLDSPLDPNLGRGN 60
Query: 61 MGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHFKD 120
+G+VREKTLREL+EPDEDQRPLCIVIP TTQPFELK GLIHLL I+K S GED HKH KD
Sbjct: 61 LGEVREKTLRELAEPDEDQRPLCIVIPSTTQPFELKSGLIHLLLIFKGSFGEDLHKHLKD 120
Query: 121 FHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFFPA 180
FHMVC SMR H +SEEQLNLRAFPF LTD AKRWLYYLEP ITTW SLKKKF+EKFFPA
Sbjct: 121 FHMVCGSMRPHSISEEQLNLRAFPFFLTDVAKRWLYYLEPDFITTWSSLKKKFLEKFFPA 180
Query: 181 SRANNIRKEIYGTGKLFG--------------------------------SLCLNTGK-- 240
SRANNIRKEIYG + FG S L++ +
Sbjct: 181 SRANNIRKEIYGIRQAFGESLSEYWERSKELYASFPHHHISDPSLIQYFYSGLLSSDRNT 240
Query: 241 -DAAAGGALADKTPTEARELISRMTENSQNFGNRTSELDNSLTKEVSELKLQMLNMTTLL 300
D AAGGALADKT E RELISRM ENSQ+FGNR SELDNSLTKEVS
Sbjct: 241 VDTAAGGALADKTLIEVRELISRMVENSQSFGNRASELDNSLTKEVST------------ 300
Query: 301 TSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWR 360
+KV KCGVCGLVGHPNDK P+++E+ N++++YDP
Sbjct: 301 -------PLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDP------------------ 360
Query: 361 NDNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQNEMKQQMSHMTNAISKLEGKGKLLA 420
MKQQ++ +T AISK+EGKGKLLA
Sbjct: 361 ------------------------------------TMKQQITQLTTAISKMEGKGKLLA 417
Query: 421 QPDHANVSAISLRSGKILETPLS-EEKVTSTPILLENTDEKKEEKLETSSLPSSSKG-KS 449
Q DHANVSAISLRSGKIL TP + E+KVTS P+ L + +E KEEK+ET+ PS+SK KS
Sbjct: 421 QQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPSPSNSKNEKS 417
BLAST of PI0025174 vs. NCBI nr
Match:
KAA0031967.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 607.4 bits (1565), Expect = 9.9e-170
Identity = 327/492 (66.46%), Postives = 379/492 (77.03%), Query Frame = 0
Query: 1 MTRSSNQELHFFEDLNREVRRIRRERREETIHNFP----RDPIENLEPNLE---HPNLDR 60
MTRSSN E +FEDLN+EVRRIRRERREE +N P ++P+ LEP+L+ PNL R
Sbjct: 1 MTRSSNLEFPYFEDLNKEVRRIRRERREE--NNIPNLSNQEPLRGLEPSLDSPLDPNLGR 60
Query: 61 ENMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHF 120
NMG+VREKT+R+L E DEDQRPLCIVI TTQPFELKP LIHLLPI+K + GEDPHKH
Sbjct: 61 GNMGEVREKTIRKLDELDEDQRPLCIVISLTTQPFELKPRLIHLLPIFKGNSGEDPHKHL 120
Query: 121 KDFHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFF 180
KDFHMVCDSMR HG+SEEQLNLRAFPFSLTD AKRWLYYLEPGSITTWGSLKKKF+EKFF
Sbjct: 121 KDFHMVCDSMRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFF 180
Query: 181 PASRANNIRKEIYGTGKLFG-----------SLCLN------------------------ 240
PASR NNIRKEIYG + FG LC N
Sbjct: 181 PASRTNNIRKEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDR 240
Query: 241 TGKDAAAGGALADKTPTEARELISRMTENSQNFGNRTSELDNSLTKEVSELKLQMLNMTT 300
DAAAGGALA+K PTEARELISRM +NSQ FGNR SEL+NSLTKEVSELK QMLNMTT
Sbjct: 241 NTVDAAAGGALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTT 300
Query: 301 LLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEANVIRKYDPHSNTYNAGWRDNPNLR 360
LLTSFVQG +KV KC VCGLVGHPNDK P+++EE N+++KYDP+SNTYN GWRDNP LR
Sbjct: 301 LLTSFVQGTPLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILR 360
Query: 361 WRNDNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQNEMKQQMSHMTNAISKLEGKGKL 420
W NDNQ+ +QA ++S+NQ TNL+D++KA TNT+SFQ EMKQQM+ +T ISK++GKGKL
Sbjct: 361 WGNDNQKHTQAPTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKL 420
Query: 421 LAQPDHANVSAISLRSGKILETP-LSEEKVTSTPILLENTDEKKEEKLETS-SLPSSSKG 449
AQP+HANVS ISLRSGKIL+TP E+KVTS P+ L + +E KEEK+ET+ SL +
Sbjct: 421 PAQPNHANVSVISLRSGKILDTPSTKEKKVTSIPLPLNSKNESKEEKVETNPSLSNPKND 480
BLAST of PI0025174 vs. NCBI nr
Match:
KAA0067359.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 512.3 bits (1318), Expect = 4.3e-141
Identity = 289/458 (63.10%), Postives = 338/458 (73.80%), Query Frame = 0
Query: 1 MTRSSNQELHFFEDLNREVRRIRRERREETIHNFP----RDPIENLEPNLE---HPNLDR 60
MTRSSN E +FEDLNREVRRIRRERREE ++ P ++P+ LEP+L+ PNL R
Sbjct: 1 MTRSSNLEFPYFEDLNREVRRIRRERREE--NSIPSLSNQEPLRGLEPSLDSPLDPNLGR 60
Query: 61 ENMGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHF 120
NM +VREKTLREL+E DE+QRPLCIVIPPTTQPFELKPGLIHLLPI+K S GEDPHKH
Sbjct: 61 GNMSEVREKTLRELAELDENQRPLCIVIPPTTQPFELKPGLIHLLPIFKGSPGEDPHKHL 120
Query: 121 KDFHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFF 180
KDFHMV DSMR HG+SEEQLNLRAF F L
Sbjct: 121 KDFHMVFDSMRPHGISEEQLNLRAFLFPL------------------------------- 180
Query: 181 PASRANNIRKEIYGTGKLFGSLCLNTGKDAAAGGALADKTPTEARELISRMTENSQNFGN 240
R N + DAA G ALADKTPTEARELISRM +N Q+FGN
Sbjct: 181 ---RMNTV--------------------DAAVGRALADKTPTEARELISRMAKNFQSFGN 240
Query: 241 RTSELDNSLTKEVSELKLQMLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVE 300
R SE DNSLTKEVSELK QMLNM TTLLTSFVQG +KV KCGVCGLVGH N+K P+++E
Sbjct: 241 RASEFDNSLTKEVSELKSQMLNMTTTLLTSFVQGTPLKVTKCGVCGLVGHLNEKCPEVIE 300
Query: 301 EANVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKAFTTNTI 360
+ N++R+YDPHSNTYN+GWRDNPNLRW NDNQ+ +QA S+S+NQGTNLED++KA TNT+
Sbjct: 301 DVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTL 360
Query: 361 SFQNEMKQQMSHMTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPLS-EEKVTSTP 420
SFQ EMKQQM+ +T AISK++GKGKL AQ DHANVSAISLRSGKIL+TP + E+KVTS P
Sbjct: 361 SFQQEMKQQMTQLTTAISKMDGKGKLPAQLDHANVSAISLRSGKILDTPTTKEKKVTSKP 402
Query: 421 ILLENTDEKKEEKLETSSLPSSSKG-KSHILDYSPYIP 449
+ L + +E KEEK+ET+ PS+SK KS + D++PYIP
Sbjct: 421 LPLNSKNESKEEKVETNPSPSNSKNDKSPLNDFTPYIP 402
BLAST of PI0025174 vs. NCBI nr
Match:
TYK04216.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 478.0 bits (1229), Expect = 9.1e-131
Identity = 259/429 (60.37%), Postives = 301/429 (70.16%), Query Frame = 0
Query: 26 RREETIHN-FPRDPIENLEPNLE---HPNLDRENMGQVREKTLRELSEPDEDQRPLCIVI 85
R E I N + + P+ LEP+L+ PNL R NMG+VREK LREL EPDEDQRPLCI+I
Sbjct: 2 REENNILNLYNQQPLRGLEPSLDSPLDPNLGRGNMGEVREKNLRELVEPDEDQRPLCIII 61
Query: 86 PPTTQPFELKPGLIHLLPIYKDSLGEDPHKHFKDFHMVCDSMRLHGVSEEQLNLRAFPFS 145
PPTTQPFELK GLIHLLPI+K S GEDPHKH KDF+MVCDSMRLHG+S+EQLNLRAFPFS
Sbjct: 62 PPTTQPFELKSGLIHLLPIFKGSFGEDPHKHHKDFYMVCDSMRLHGISKEQLNLRAFPFS 121
Query: 146 LTDTAKRWLYYLEPGSITTWGSLKKKFIEKFFPASRANNIRKEIYGTGKLFGSLCLNTGK 205
L D AKRWLYYLEPGSITTW
Sbjct: 122 LMDVAKRWLYYLEPGSITTW---------------------------------------- 181
Query: 206 DAAAGGALADKTPTEARELISRMTENSQNFGNRTSELDNSLTKEVSELKLQMLNMTTLLT 265
DAAAGGALADKTP EARELISRMTE SQ+FGNR SELDNSLTK
Sbjct: 182 DAAAGGALADKTPIEARELISRMTEISQSFGNRASELDNSLTK----------------- 241
Query: 266 SFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWRN 325
CGVCGLVGHPNDK P+++ + N+++KYDPH NTYN+GWRDNPNLRW N
Sbjct: 242 -----------VCGVCGLVGHPNDKCPEVISDVNIVQKYDPHGNTYNSGWRDNPNLRWGN 301
Query: 326 DNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQNEMKQQMSHMTNAISKLEGKGKLLAQ 385
DNQ+ +QA +S+NQGTNLED++KA TNT+SFQ EMKQQM+ +T AISK++GKGKL Q
Sbjct: 302 DNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLTDQ 361
Query: 386 PDHANVSAISLRSGKILET-PLSEEKVTSTPILLENTDEKKEEKLETSSLPSSSKG-KSH 445
P+HANVS ISLRSGKIL+T E+KVTS P+ L + +E KEEK+ET+ PS SK K
Sbjct: 362 PNHANVSTISLRSGKILDTLTTKEKKVTSKPLPLNSKNESKEEKIETNPSPSKSKNDKPP 362
Query: 446 ILDYSPYIP 449
+ D++PYIP
Sbjct: 422 LNDFTPYIP 362
BLAST of PI0025174 vs. NCBI nr
Match:
KAA0062012.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 471.5 bits (1212), Expect = 8.5e-129
Identity = 240/351 (68.38%), Postives = 272/351 (77.49%), Query Frame = 0
Query: 56 MGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHFKD 115
MG+VREKTLREL EPDEDQRPLC+VIPPTTQPFELK GLIHLLPI+K S GEDP+KH KD
Sbjct: 1 MGEVREKTLRELVEPDEDQRPLCVVIPPTTQPFELKLGLIHLLPIFKGSSGEDPYKHLKD 60
Query: 116 FHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFFPA 175
FHMVCDSMR HG+SEEQLNLRAFPFSLTD KRWLYYLEP
Sbjct: 61 FHMVCDSMRPHGISEEQLNLRAFPFSLTDVVKRWLYYLEP-------------------- 120
Query: 176 SRANNIRKEIYGTGKLFGSLCLNTGKDAAAGGALADKTPTEARELISRMTENSQNFGNRT 235
DA AG ALADKTPT+A ELISRM ENSQ+FGNR
Sbjct: 121 -------------------------VDAVAGEALADKTPTKAGELISRMAENSQSFGNRA 180
Query: 236 SELDNSLTKEVSELKLQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEAN 295
ELDNSLTKEVSELK QMLNMTTLLTSFVQG +KV KCGVCGLVGHPNDK P+++E+ N
Sbjct: 181 LELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVN 240
Query: 296 VIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQ 355
++R+YDPH NTYN+ WRDNPNLRW NDNQ+ +QA S+S+NQGTNL+D++KA TNT+SFQ
Sbjct: 241 IVRRYDPHGNTYNSRWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLKDIIKALVTNTLSFQ 300
Query: 356 NEMKQQMSHMTNAISKLEGKGKLLAQPDHANVSAISLRSGKILETPLSEEK 407
EMKQQM+ +T AISK++GKGKLLAQP+H NVSAI LRSGKIL+TP ++EK
Sbjct: 301 QEMKQQMTQLTTAISKMDGKGKLLAQPEHDNVSAILLRSGKILDTPTTKEK 306
BLAST of PI0025174 vs. NCBI nr
Match:
KAA0025369.1 (uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK23432.1 uncharacterized protein E5676_scaffold605G00340 [Cucumis melo var. makuwa])
HSP 1 Score: 463.8 bits (1192), Expect = 1.8e-126
Identity = 274/490 (55.92%), Postives = 317/490 (64.69%), Query Frame = 0
Query: 1 MTRSSNQELHFFEDLNREVRRIRRERREE-TIHNFP-RDPIENLEPNLE---HPNLDREN 60
MTRSSN + +FEDLNREVRRIRRERREE +IHN ++P+ LEP+L+ PNL R N
Sbjct: 1 MTRSSNLKFSYFEDLNREVRRIRRERREENSIHNLSNQEPLRGLEPSLDSPLDPNLGRGN 60
Query: 61 MGQVREKTLRELSEPDEDQRPLCIVIPPTTQPFELKPGLIHLLPIYKDSLGEDPHKHFKD 120
+G+VREKTLREL+EPDEDQRPLCIVIP TTQPFELK GLIHLL I+K S GED HKH KD
Sbjct: 61 LGEVREKTLRELAEPDEDQRPLCIVIPSTTQPFELKSGLIHLLLIFKGSFGEDLHKHLKD 120
Query: 121 FHMVCDSMRLHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFIEKFFPA 180
FHMVC SMR H +SEEQLNLRAFPF LTD AKRWLYYLEP ITTW SLKKKF+EKFFPA
Sbjct: 121 FHMVCGSMRPHSISEEQLNLRAFPFFLTDVAKRWLYYLEPDFITTWSSLKKKFLEKFFPA 180
Query: 181 SRANNIRKEIYGTGKLFG--------------------------------SLCLNTGK-- 240
SRANNIRKEIYG + FG S L++ +
Sbjct: 181 SRANNIRKEIYGIRQAFGESLSEYWERSKELYASFPHHHISDPSLIQYFYSGLLSSDRNT 240
Query: 241 -DAAAGGALADKTPTEARELISRMTENSQNFGNRTSELDNSLTKEVSELKLQMLNMTTLL 300
D AAGGALADKT E RELISRM ENSQ+FGNR SELDNSLTKEVS
Sbjct: 241 VDTAAGGALADKTLIEVRELISRMVENSQSFGNRASELDNSLTKEVST------------ 300
Query: 301 TSFVQGGSVKVAKCGVCGLVGHPNDKYPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWR 360
+KV KCGVCGLVGHPNDK P+++E+ N++++YDP
Sbjct: 301 -------PLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQRYDP------------------ 360
Query: 361 NDNQRPSQATSSSNNQGTNLEDLVKAFTTNTISFQNEMKQQMSHMTNAISKLEGKGKLLA 420
MKQQ++ +T AISK+EGKGKLLA
Sbjct: 361 ------------------------------------TMKQQITQLTTAISKMEGKGKLLA 417
Query: 421 QPDHANVSAISLRSGKILETPLS-EEKVTSTPILLENTDEKKEEKLETSSLPSSSKG-KS 449
Q DHANVSAISLRSGKIL TP + E+KVTS P+ L + +E KEEK+ET+ PS+SK KS
Sbjct: 421 QQDHANVSAISLRSGKILNTPTTKEKKVTSEPLPLNSKNESKEEKVETNPSPSNSKNEKS 417
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SRF5 | 4.8e-170 | 66.46 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5A7VQ60 | 2.1e-141 | 63.10 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5D3C1D3 | 4.4e-131 | 60.37 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5A7V1C6 | 4.1e-129 | 68.38 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5D3DIP6 | 8.6e-127 | 55.92 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0031967.1 | 9.9e-170 | 66.46 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotranspos... | [more] |
| KAA0067359.1 | 4.3e-141 | 63.10 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotranspos... | [more] |
| TYK04216.1 | 9.1e-131 | 60.37 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0062012.1 | 8.5e-129 | 68.38 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0025369.1 | 1.8e-126 | 55.92 | uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
