PI0025134 (gene) Melon (PI 482460) v1

Overview


Name	PI0025134
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr11: 11824071 .. 11824672 (+)
RNA-Seq Expression	PI0025134
Synteny	PI0025134

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCGGGCCGTCGTGTAGTGGGTTTGGTTGGAACGATGGGGTGAAGTGCATCATCGCTGAGAGAGAGTTGTTCGAAAATTGGGTGAACGTAAGTTATTCATTATGAAAATAAGATGTTCGTTTATAATAGAAAAAAACTGACAATTTATTTAAAAACTTGAACAGAGTCATCTTGCTGCGAAAGACCTCCTAAACAAGCCATTTCTCCATTTCAACAACCAGTGCTACGTATTTGGGAAGGATCGTGCGACGGGAGCTCGTGCGGAGATATTCACCGATGTCGGGTTGAATGTGCCTGAAGGGTTTGAGGGATTTCTCGTTGATTATGGCCACGATACGGAGATCCCTATGATGTACAGTCAGGGACTAGACATGTCGCCTGATGACATTGCGGGCTCACGACCCGGTCGCTCGATGGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGGAAGCGGGGAGGCCAGACAGTACAGACTGTGGAGATCATTCAGAATGCAATGGACTTCGCCAATGACCAGTTGAAGGCCATTGCAAAGTCGCTGAATTTACAACGTCAAGATGAATGTGCCGCTCGTGACAAAGTCGTTAACCAGCTGTAG

mRNA sequence

ATGCGCGGGCCGTCGTGTAGTGGGTTTGGTTGGAACGATGGGGTGAAGTGCATCATCGCTGAGAGAGAGTTGTTCGAAAATTGGGTGAACAGTCATCTTGCTGCGAAAGACCTCCTAAACAAGCCATTTCTCCATTTCAACAACCAGTGCTACGTATTTGGGAAGGATCGTGCGACGGGAGCTCGTGCGGAGATATTCACCGATGTCGGGTTGAATGTGCCTGAAGGGTTTGAGGGATTTCTCGTTGATTATGGCCACGATACGGAGATCCCTATGATGTACAGTCAGGGACTAGACATGTCGCCTGATGACATTGCGGGCTCACGACCCGGTCGCTCGATGGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGGAAGCGGGGAGGCCAGACAGTACAGACTGTGGAGATCATTCAGAATGCAATGGACTTCGCCAATGACCAGTTGAAGGCCATTGCAAAGTCGCTGAATTTACAACGTCAAGATGAATGTGCCGCTCGTGACAAAGTCGTTAACCAGCTGTAG

Coding sequence (CDS)

ATGCGCGGGCCGTCGTGTAGTGGGTTTGGTTGGAACGATGGGGTGAAGTGCATCATCGCTGAGAGAGAGTTGTTCGAAAATTGGGTGAACAGTCATCTTGCTGCGAAAGACCTCCTAAACAAGCCATTTCTCCATTTCAACAACCAGTGCTACGTATTTGGGAAGGATCGTGCGACGGGAGCTCGTGCGGAGATATTCACCGATGTCGGGTTGAATGTGCCTGAAGGGTTTGAGGGATTTCTCGTTGATTATGGCCACGATACGGAGATCCCTATGATGTACAGTCAGGGACTAGACATGTCGCCTGATGACATTGCGGGCTCACGACCCGGTCGCTCGATGGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGGAAGCGGGGAGGCCAGACAGTACAGACTGTGGAGATCATTCAGAATGCAATGGACTTCGCCAATGACCAGTTGAAGGCCATTGCAAAGTCGCTGAATTTACAACGTCAAGATGAATGTGCCGCTCGTGACAAAGTCGTTAACCAGCTGTAG

Protein sequence

MRGPSCSGFGWNDGVKCIIAERELFENWVNSHLAAKDLLNKPFLHFNNQCYVFGKDRATGARAEIFTDVGLNVPEGFEGFLVDYGHDTEIPMMYSQGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKRGGQTVQTVEIIQNAMDFANDQLKAIAKSLNLQRQDECAARDKVVNQL

Homology

[Close]

BLAST of PI0025134 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.5e-47
Identity = 95/174 (54.60%), Postives = 124/174 (71.26%), Query Frame = 0


Query: 1   MRGPSCSGFGWNDGVKCIIAERELFENWVNSHLAAKDLLNKPFLHFNNQCYVFGKDRATG 60
           MRGP+CSGFGWND  KCI+AE+E+F++WV SH AAK LLNK F H++   YVF KD ATG
Sbjct: 54  MRGPTCSGFGWNDEQKCIVAEKEVFDDWVRSHPAAKGLLNKSFPHYDELSYVFSKDHATG 113

Query: 61  ARAEIFTDVGLNVPEGFEGFLVDYGHDTEIPMMYSQGLDMSPDDIAGSRPGRSMEGRTGS 120
            RAE F DVG N P G++ F  +   DT+   MYS+GL+MSPD++ G+R  R  EGR  S
Sbjct: 114 GRAESFADVGSNDPTGYDAFAANAASDTDFQPMYSRGLNMSPDELMGTRTARVSEGRYVS 173

Query: 121 SGSKRKRGGQTVQTVEIIQNAMDFANDQLKAIAKSLNLQRQDECAARDKVVNQL 175
           SGSK+KRGG T+ + +I++ A+++ N+QL  IA+   LQRQD    R +VV QL
Sbjct: 174 SGSKQKRGGSTIDSGDILRTAIEYGNEQLNRIAEWHVLQRQDATQTRQEVVRQL 227

[Close]

BLAST of PI0025134 vs. ExPASy TrEMBL
Match: A0A5A7SXX8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00320 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 6.2e-46
Identity = 95/171 (55.56%), Postives = 120/171 (70.18%), Query Frame = 0


Query: 1   MRGPSCSGFGWNDGVKCIIAERELFENWVNSHLAAKDLLNKPFLHFNNQCYVFGKDRATG 60
           M GP+CS FGWND  KCI+AE+E+F+NWV SH  AK LLNK F H++   YVFGKDRATG
Sbjct: 164 MCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELSYVFGKDRATG 223

Query: 61  ARAEIFTDVGLNVPEGFEGFLVDYGHDTEIPMMYSQGLDMSPDDIAGSRPGRSMEGRTGS 120
            RAE F D+GLN P G+E F VD   DT+   MYSQGL+MSPD++ G R  +  EGR  S
Sbjct: 224 GRAESFADIGLNDPAGYEPFAVDATPDTDFQPMYSQGLNMSPDELMGIRNAQVSEGRYVS 283

Query: 121 SGSKRKRGGQTVQTVEIIQNAMDFANDQLKAIAKSLNLQRQDECAARDKVV 172
           SGSKRKR GQ   + ++++ A+++ N+QL  IA+   LQRQD    R +VV
Sbjct: 284 SGSKRKRKGQATDSGDVLRTAIEYGNEQLNCIAEWPILQRQDASQTRQEVV 334

[Close]

BLAST of PI0025134 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 6.2e-46
Identity = 94/174 (54.02%), Postives = 120/174 (68.97%), Query Frame = 0


Query: 1   MRGPSCSGFGWNDGVKCIIAERELFENWVNSHLAAKDLLNKPFLHFNNQCYVFGKDRATG 60
           MRGP+CSGFGWND  KCI+ E+ELF++WV SH AAK LLNK F+H++   YVFGKDRATG
Sbjct: 83  MRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATG 142

Query: 61  ARAEIFTDVGLNVPEGFEGFLVDYGHDTEIPMMYSQGLDMSPDDIAGSRPGRSMEGRTGS 120
            RAE F D+G N P G++    D   DT+ P MYS GL+MSPDD+  +R  R  E R  S
Sbjct: 143 GRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS 202

Query: 121 SGSKRKRGGQTVQTVEIIQNAMDFANDQLKAIAKSLNLQRQDECAARDKVVNQL 175
           SGSKRKR G    + +I++ A+++ N+QL  IA+   LQRQD    R ++V QL
Sbjct: 203 SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDASQTRQEIVRQL 256

[Close]

BLAST of PI0025134 vs. ExPASy TrEMBL
Match: A0A5A7U4M2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00330 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.4e-45
Identity = 94/174 (54.02%), Postives = 120/174 (68.97%), Query Frame = 0


Query: 1   MRGPSCSGFGWNDGVKCIIAERELFENWVNSHLAAKDLLNKPFLHFNNQCYVFGKDRATG 60
           MR P+CSGFGWND  KCIIAE+E+F++WV SH AAK LLNK F+H++   YVFGKDRATG
Sbjct: 33  MRDPNCSGFGWNDEKKCIIAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATG 92

Query: 61  ARAEIFTDVGLNVPEGFEGFLVDYGHDTEIPMMYSQGLDMSPDDIAGSRPGRSMEGRTGS 120
            RAE F D+G N P G++ F  D   DT+ P MYS GL+MSPDD+  +R  R  E R  S
Sbjct: 93  GRAESFADIGSNDPAGYDAFAADTVLDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS 152

Query: 121 SGSKRKRGGQTVQTVEIIQNAMDFANDQLKAIAKSLNLQRQDECAARDKVVNQL 175
           SGSK KR G    + +I++ A+++ N+QL  IA+   LQRQD    R ++V QL
Sbjct: 153 SGSKWKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQL 206

[Close]

BLAST of PI0025134 vs. ExPASy TrEMBL
Match: A0A5A7U098 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00330 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.4e-45
Identity = 94/174 (54.02%), Postives = 118/174 (67.82%), Query Frame = 0


Query: 1   MRGPSCSGFGWNDGVKCIIAERELFENWVNSHLAAKDLLNKPFLHFNNQCYVFGKDRATG 60
           MRGP+CSGFGWND  KCI+ E+ELF++WV SH  AK LLNK F+H++   YVFGKDRATG
Sbjct: 83  MRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPMAKGLLNKSFVHYDELSYVFGKDRATG 142

Query: 61  ARAEIFTDVGLNVPEGFEGFLVDYGHDTEIPMMYSQGLDMSPDDIAGSRPGRSMEGRTGS 120
            RAE FTD+G N P G++ F  D   DT    MYS GL+MSPDD+  +R  R  E R  S
Sbjct: 143 GRAESFTDIGSNDPAGYDAFAADAAPDTNFSPMYSSGLNMSPDDLMETRTVRVSERRNVS 202

Query: 121 SGSKRKRGGQTVQTVEIIQNAMDFANDQLKAIAKSLNLQRQDECAARDKVVNQL 175
           SGSKRKR G    + +I+  A+++ N+QL  IA+   LQRQD    R ++V QL
Sbjct: 203 SGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQL 256

[Close]

BLAST of PI0025134 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 5.2e-47
Identity = 95/174 (54.60%), Postives = 124/174 (71.26%), Query Frame = 0


Query: 1   MRGPSCSGFGWNDGVKCIIAERELFENWVNSHLAAKDLLNKPFLHFNNQCYVFGKDRATG 60
           MRGP+CSGFGWND  KCI+AE+E+F++WV SH AAK LLNK F H++   YVF KD ATG
Sbjct: 54  MRGPTCSGFGWNDEQKCIVAEKEVFDDWVRSHPAAKGLLNKSFPHYDELSYVFSKDHATG 113

Query: 61  ARAEIFTDVGLNVPEGFEGFLVDYGHDTEIPMMYSQGLDMSPDDIAGSRPGRSMEGRTGS 120
            RAE F DVG N P G++ F  +   DT+   MYS+GL+MSPD++ G+R  R  EGR  S
Sbjct: 114 GRAESFADVGSNDPTGYDAFAANAASDTDFQPMYSRGLNMSPDELMGTRTARVSEGRYVS 173

Query: 121 SGSKRKRGGQTVQTVEIIQNAMDFANDQLKAIAKSLNLQRQDECAARDKVVNQL 175
           SGSK+KRGG T+ + +I++ A+++ N+QL  IA+   LQRQD    R +VV QL
Sbjct: 174 SGSKQKRGGSTIDSGDILRTAIEYGNEQLNRIAEWHVLQRQDATQTRQEVVRQL 227

[Close]

BLAST of PI0025134 vs. NCBI nr
Match: KAA0035413.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-45
Identity = 95/171 (55.56%), Postives = 120/171 (70.18%), Query Frame = 0


Query: 1   MRGPSCSGFGWNDGVKCIIAERELFENWVNSHLAAKDLLNKPFLHFNNQCYVFGKDRATG 60
           M GP+CS FGWND  KCI+AE+E+F+NWV SH  AK LLNK F H++   YVFGKDRATG
Sbjct: 164 MCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELSYVFGKDRATG 223

Query: 61  ARAEIFTDVGLNVPEGFEGFLVDYGHDTEIPMMYSQGLDMSPDDIAGSRPGRSMEGRTGS 120
            RAE F D+GLN P G+E F VD   DT+   MYSQGL+MSPD++ G R  +  EGR  S
Sbjct: 224 GRAESFADIGLNDPAGYEPFAVDATPDTDFQPMYSQGLNMSPDELMGIRNAQVSEGRYVS 283

Query: 121 SGSKRKRGGQTVQTVEIIQNAMDFANDQLKAIAKSLNLQRQDECAARDKVV 172
           SGSKRKR GQ   + ++++ A+++ N+QL  IA+   LQRQD    R +VV
Sbjct: 284 SGSKRKRKGQATDSGDVLRTAIEYGNEQLNCIAEWPILQRQDASQTRQEVV 334

[Close]

BLAST of PI0025134 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-45
Identity = 94/174 (54.02%), Postives = 120/174 (68.97%), Query Frame = 0


Query: 1   MRGPSCSGFGWNDGVKCIIAERELFENWVNSHLAAKDLLNKPFLHFNNQCYVFGKDRATG 60
           MRGP+CSGFGWND  KCI+ E+ELF++WV SH AAK LLNK F+H++   YVFGKDRATG
Sbjct: 83  MRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATG 142

Query: 61  ARAEIFTDVGLNVPEGFEGFLVDYGHDTEIPMMYSQGLDMSPDDIAGSRPGRSMEGRTGS 120
            RAE F D+G N P G++    D   DT+ P MYS GL+MSPDD+  +R  R  E R  S
Sbjct: 143 GRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS 202

Query: 121 SGSKRKRGGQTVQTVEIIQNAMDFANDQLKAIAKSLNLQRQDECAARDKVVNQL 175
           SGSKRKR G    + +I++ A+++ N+QL  IA+   LQRQD    R ++V QL
Sbjct: 203 SGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDASQTRQEIVRQL 256

[Close]

BLAST of PI0025134 vs. NCBI nr
Match: KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 4.9e-45
Identity = 94/174 (54.02%), Postives = 118/174 (67.82%), Query Frame = 0


Query: 1   MRGPSCSGFGWNDGVKCIIAERELFENWVNSHLAAKDLLNKPFLHFNNQCYVFGKDRATG 60
           MRGP+CSGFGWND  KCI+ E+ELF++WV SH  AK LLNK F+H++   YVFGKDRATG
Sbjct: 83  MRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPMAKGLLNKSFVHYDELSYVFGKDRATG 142

Query: 61  ARAEIFTDVGLNVPEGFEGFLVDYGHDTEIPMMYSQGLDMSPDDIAGSRPGRSMEGRTGS 120
            RAE FTD+G N P G++ F  D   DT    MYS GL+MSPDD+  +R  R  E R  S
Sbjct: 143 GRAESFTDIGSNDPAGYDAFAADAAPDTNFSPMYSSGLNMSPDDLMETRTVRVSERRNVS 202

Query: 121 SGSKRKRGGQTVQTVEIIQNAMDFANDQLKAIAKSLNLQRQDECAARDKVVNQL 175
           SGSKRKR G    + +I+  A+++ N+QL  IA+   LQRQD    R ++V QL
Sbjct: 203 SGSKRKRPGHVTDSGDIVCTAIEYRNEQLHRIAEWPILQRQDASQTRQEIVRQL 256

[Close]

BLAST of PI0025134 vs. NCBI nr
Match: KAA0050782.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 4.9e-45
Identity = 94/174 (54.02%), Postives = 120/174 (68.97%), Query Frame = 0


Query: 1   MRGPSCSGFGWNDGVKCIIAERELFENWVNSHLAAKDLLNKPFLHFNNQCYVFGKDRATG 60
           MR P+CSGFGWND  KCIIAE+E+F++WV SH AAK LLNK F+H++   YVFGKDRATG
Sbjct: 33  MRDPNCSGFGWNDEKKCIIAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATG 92

Query: 61  ARAEIFTDVGLNVPEGFEGFLVDYGHDTEIPMMYSQGLDMSPDDIAGSRPGRSMEGRTGS 120
            RAE F D+G N P G++ F  D   DT+ P MYS GL+MSPDD+  +R  R  E R  S
Sbjct: 93  GRAESFADIGSNDPAGYDAFAADTVLDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS 152

Query: 121 SGSKRKRGGQTVQTVEIIQNAMDFANDQLKAIAKSLNLQRQDECAARDKVVNQL 175
           SGSK KR G    + +I++ A+++ N+QL  IA+   LQRQD    R ++V QL
Sbjct: 153 SGSKWKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQL 206

The following BLAST results are available for this feature:

BLAST of PI0025134 vs.


Match Name	E-value	Identity	Description

BLAST of PI0025134 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZA5	2.5e-47	54.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SXX8	6.2e-46	55.56	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C1M0	6.2e-46	54.02	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4M2	2.4e-45	54.02	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U098	2.4e-45	54.02	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0025134 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048374.1	5.2e-47	54.60	retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p...	[more]
KAA0035413.1	1.3e-45	55.56	retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon p...	[more]
TYK05082.1	1.3e-45	54.02	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047075.1	4.9e-45	54.02	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0050782.1	4.9e-45	54.02	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0025134 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..131
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 1..155
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 1..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0025134.1	PI0025134.1	mRNA