PI0025054 (gene) Melon (PI 482460) v1

Overview
NamePI0025054
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionSWIM-type domain-containing protein
Locationchr07: 18964058 .. 18966244 (-)
RNA-Seq ExpressionPI0025054
SyntenyPI0025054
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAAGGTCAAAATGTTGTTGAAATTCATGAGCATAAGGATGTAGCTTGGTTTTTGGCATTAGTTAAGTAACACAATACAAGACATCCTTTGGTTGCTCATGTCACTAGTTCATGTTTGGGAGTGTCTTCTAGTGTTGTTTCTAGTGGACCAGAGAACTTTTTGTCTGTTGTTCCTTCTTCTACACCATTGATTGGTGATGACAATTTTCAAGTGATTATGGATATACATATTGATCGTGACTTGAAAGAGAATGATTTGTTTGCCAGTAAAGAGATTTTATCAAATTGTTTTAACTTTATAGCAGTCAAGAAGAATTTTGAATTTAAGACTGTAAGATCAAATTCAAGATCAATTGTATTTCAATGTGTTCAAGATGACTGTCAATGGTATGTGAGGGCATCCCGTTACAAGCACAGTGTTTTGTGGATGCTGAGGAAGTTTATTGATATTCATGTTTGTTCTATAAAAAGTATTCAGTCTTTGCATAAGCAAGCTACATCATCTTTAATAACTGAATGTTTAAAGGATGATTTTAGATTTAGTTCTTCTCATACCTCAACTCCTAGTGATATTATACATAAAGTTCGTAAGAAATTTGGAGTAAATGTTAGCTATTATAAAGCATGAAGGGCAAAAGAGCAAATAATGAAATCTTTGAAAGGCGATGCGCGAGAATCATACGTTTTGATTCCAACGTTTTTTATGAAGTTAAAAGAAATGAATCCAGGTTTATTTATTTTTTTCCAACTTATTTTTTAGAGTAAACAAGACTGCATAGTTTATCGGTGATATCATCTATCACTGACTGCTTCCATCACTGATAGCTTCCATCATTGATAACTTCCATCAATTATCACTAAGAATGATGGAAGGTATCACAGTGATAGATGATATCACTAATAGACTTTATCCAATTATAAACATTGCTTACTTGTCTGTTTTCATGATTATTTTATTTTAGGTACATTCACTCCCTATGAAGCAGACATAGATGGGCATTTTAAGTATTGTTATATGGCTATGGGAGCATCAATTGAGGCTTGGAAGCATTGTAGACCCAATATATTTGTTGATGGCACGTTCTTAAAATGCAAATATGTTGGGACTCTTTTGACAGCTACAACAATTGACGGTAACAATCAAATTTTGCCTCTTGCTTTTAGTATTGTTGATTCTGAAAATGATGCATCGTGGAGATGGTTTTTTAAGCATATAAAGAATAGTTTTGGCGAACAAGAGGGATTAGCAATTATTTCTGATCGACATTTAAGCATTTCGAAAGGTGTTATGAATGTCTTTCCAACTGTTGAATATTGTGTTTGTATACGACATCTTTTGCATAATATGAAGTTGATTTATAAGGCTTCTTTAATTGATGAACTATTTTTTAGTTGTGCAAAAGTTTATACAATTGATAAGTTTGAATTTTATATGAAATGGATGGAATCAACATATCCTACTATTCAGGAATATCTCAGTAAAGCTGGTTTTGAGAAGTGGGCACGTGCGTATTCTAGAAGAAAAAGGTATAATATGATGACTACGAATGTTTTAGAGTGCTTGAATAATATTTTGAAAGAGCCTAGAGAGTTCCCTGTTGCAACGTTACTTGATTCCATTAGAGAAAAACTTCAACAATGGTTTTATGAAAAAGGTCAAACAACATTATCTATGAAGACAATTTTAACTAGTTGGGCAGAGTTTGAGTTGCGGGAGCTGCACAATCAATCACGAACCTTCAAGGTACAAAATTAGCTATTAGTTTATAGTGATAATTATTGATCATGTGGTTGATTATATTTTGTTTTTCAGGTTAATCCGATTAACAATAAAGAATATAAAGTAGTTGATGGAGCGGTAAACTTGGTGTCTAGATCATGCAATTGTCGTGTTTGGGATTTGGAGGAGATTTCGTATGCTCATGCTTGTGCTGTTCTTCATGGGGTAAATTTAGATATCTATGCTTTTGTGTCAAACTATTATTTTTCCAGTACACTATTATCAACCTATAAAGGATTTGTTTATCCTATTGGAAATCATTCTCACTGGAGTTCTGTTGATGTTGATGTGAATGTATTACCTCCAATAGTTAAACGTCAAGTTGGACGACCACGAAAACAAAGAATGTTGTCAATTGGTGAAAAGAAAAAGAACTTGAATAAGTGCAGTCGATATCATTAG

mRNA sequence

ATGAATGAAGGTCAAAATGTTGTTGAAATTCATGAGCATAAGGATGTAGCTTGGTTTTTGGCATTAGTTAATGTTGTTTCTAGTGGACCAGAGAACTTTTTGTCTGTTGTTCCTTCTTCTACACCATTGATTGGTGATGACAATTTTCAAGTGATTATGGATATACATATTGATCGTGACTTGAAAGAGAATGATTTGTTTGCCAGTAAAGAGATTTTATCAAATTGTTTTAACTTTATAGCAGTCAAGAAGAATTTTGAATTTAAGACTGTTAATCCGATTAACAATAAAGAATATAAAGTAGTTGATGGAGCGGTAAACTTGGTGTCTAGATCATGCAATTGTCGTGTTTGGGATTTGGAGGAGATTTCGTATGCTCATGCTTGTGCTGTTCTTCATGGGGTAAATTTAGATATCTATGCTTTTGTGTCAAACTATTATTTTTCCAGTACACTATTATCAACCTATAAAGGATTTGTTTATCCTATTGGAAATCATTCTCACTGGAGTTCTGTTGATGTTGATGTGAATGTATTACCTCCAATAGTTAAACGTCAAGTTGGACGACCACGAAAACAAAGAATGTTGTCAATTGGTGAAAAGAAAAAGAACTTGAATAAGTGCAGTCGATATCATTAG

Coding sequence (CDS)

ATGAATGAAGGTCAAAATGTTGTTGAAATTCATGAGCATAAGGATGTAGCTTGGTTTTTGGCATTAGTTAATGTTGTTTCTAGTGGACCAGAGAACTTTTTGTCTGTTGTTCCTTCTTCTACACCATTGATTGGTGATGACAATTTTCAAGTGATTATGGATATACATATTGATCGTGACTTGAAAGAGAATGATTTGTTTGCCAGTAAAGAGATTTTATCAAATTGTTTTAACTTTATAGCAGTCAAGAAGAATTTTGAATTTAAGACTGTTAATCCGATTAACAATAAAGAATATAAAGTAGTTGATGGAGCGGTAAACTTGGTGTCTAGATCATGCAATTGTCGTGTTTGGGATTTGGAGGAGATTTCGTATGCTCATGCTTGTGCTGTTCTTCATGGGGTAAATTTAGATATCTATGCTTTTGTGTCAAACTATTATTTTTCCAGTACACTATTATCAACCTATAAAGGATTTGTTTATCCTATTGGAAATCATTCTCACTGGAGTTCTGTTGATGTTGATGTGAATGTATTACCTCCAATAGTTAAACGTCAAGTTGGACGACCACGAAAACAAAGAATGTTGTCAATTGGTGAAAAGAAAAAGAACTTGAATAAGTGCAGTCGATATCATTAG

Protein sequence

MNEGQNVVEIHEHKDVAWFLALVNVVSSGPENFLSVVPSSTPLIGDDNFQVIMDIHIDRDLKENDLFASKEILSNCFNFIAVKKNFEFKTVNPINNKEYKVVDGAVNLVSRSCNCRVWDLEEISYAHACAVLHGVNLDIYAFVSNYYFSSTLLSTYKGFVYPIGNHSHWSSVDVDVNVLPPIVKRQVGRPRKQRMLSIGEKKKNLNKCSRYH
Homology
BLAST of PI0025054 vs. ExPASy TrEMBL
Match: A0A6J1DRB5 (uncharacterized protein LOC111023543 OS=Momordica charantia OX=3673 GN=LOC111023543 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.5e-28
Identity = 68/118 (57.63%), Postives = 87/118 (73.73%), Query Frame = 0

Query: 90  TVNPINNKEYKVVDGA----VNLVSRSCNCRVWDLEEISYAHACAVLHGVNLDIYAFVSN 149
           +V+PINN E++V+  A    VNL S+SC CRVWDLEEI  AHA AV+  ++L+ Y++VS 
Sbjct: 223 SVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNHYSYVSE 282

Query: 150 YYFSSTLLSTYKGFVYPIGNHSHWSSVDVDVNVLPPIVKRQVGRPRKQRMLSIGEKKK 204
           YY SS LL TY G + P+GNH  W SV +DVNVLPPI+KR   RP+KQR+ SIGE +K
Sbjct: 283 YYLSSRLLFTYNGSIRPVGNHLDWGSVAIDVNVLPPIIKRPARRPQKQRIPSIGEVEK 340

BLAST of PI0025054 vs. ExPASy TrEMBL
Match: A0A1S3CSI6 (uncharacterized protein LOC103504407 OS=Cucumis melo OX=3656 GN=LOC103504407 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.5e-28
Identity = 65/126 (51.59%), Postives = 93/126 (73.81%), Query Frame = 0

Query: 91  VNPINNKEYKVVDG----AVNLVSRSCNCRVWDLEEISYAHACAVLHGVNLDIYAFVSNY 150
           VN IN+ E++V++G     V L  +SC CRVWDL++I  AHA AVL G +++ Y+FVS Y
Sbjct: 1   VNAINDVEFQVIEGRKQFIVRLDCKSCTCRVWDLDKIPCAHALAVLRGRSMNTYSFVSKY 60

Query: 151 YFSSTLLSTYKGFVYPIGNHSHWSSVDVDVNVLPPIVKRQVGRPRKQRMLSIGEKKKNLN 210
           + SSTL+STY G V P+GNH++W S+ ++ N+LPP  KR+ G+ +KQR+LSIGEKK + +
Sbjct: 61  FLSSTLISTYTGSVRPVGNHANWKSIGIENNILPPTFKRRAGQLQKQRILSIGEKKSH-S 120

Query: 211 KCSRYH 213
           +CS  H
Sbjct: 121 RCSHCH 125

BLAST of PI0025054 vs. ExPASy TrEMBL
Match: A0A5A7SST5 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00990 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.5e-27
Identity = 65/124 (52.42%), Postives = 88/124 (70.97%), Query Frame = 0

Query: 91  VNPINNKEYKVVDGAVNLVSR----SCNCRVWDLEEISYAHACAVLHGVNLDIYAFVSNY 150
           VNP++  E++VVDG  N + +    SC+C  WDL+EI  AHA  V+  +NL+ YAFV  Y
Sbjct: 70  VNPVSEVEFQVVDGGKNFLVKLNCNSCSCLFWDLKEIPCAHALIVICSLNLNPYAFVPQY 129

Query: 151 YFSSTLLSTYKGFVYPIGNHSHWSSVDVDVNVLPPIVKRQVGRPRKQRMLSIGEKKKNLN 210
           Y+++ L +TY G V PIGNH+ WS V+V+ N+LPP+ +R  GRPRK+R+ SIGE  KNL 
Sbjct: 130 YYATVLFATYDGLVRPIGNHTDWSVVEVNDNILPPVFRRPAGRPRKRRIPSIGEVSKNL- 189

BLAST of PI0025054 vs. ExPASy TrEMBL
Match: A0A5D3BVP4 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00470 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.5e-27
Identity = 65/124 (52.42%), Postives = 89/124 (71.77%), Query Frame = 0

Query: 91  VNPINNKEYKVVDGAVNLVSR----SCNCRVWDLEEISYAHACAVLHGVNLDIYAFVSNY 150
           VNP++  E++VVDG  N + +    SC+C  WDLEEI  AHA  V+  +NL+ YAFVS Y
Sbjct: 70  VNPVSEVEFQVVDGGKNFLVKLNCNSCSCLFWDLEEIPCAHALIVIRSLNLNPYAFVSQY 129

Query: 151 YFSSTLLSTYKGFVYPIGNHSHWSSVDVDVNVLPPIVKRQVGRPRKQRMLSIGEKKKNLN 210
           Y+++ L +TY G V PIGNH+ WS V+V+ N+LPP+ +R  GRPRK+R+ SIGE  K+ +
Sbjct: 130 YYATVLSATYGGLVRPIGNHTDWSVVEVNDNILPPVFRRPAGRPRKRRIPSIGEVSKS-S 189

BLAST of PI0025054 vs. ExPASy TrEMBL
Match: A0A5A7V6N4 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001490 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.6e-27
Identity = 66/124 (53.23%), Postives = 89/124 (71.77%), Query Frame = 0

Query: 91  VNPINNKEYKVVDGAVNLVSR----SCNCRVWDLEEISYAHACAVLHGVNLDIYAFVSNY 150
           VNP++  E++VVDG  N + +    SC+C  WDLEEIS AHA  V+  +NL+ YAFVS Y
Sbjct: 505 VNPVSEVEFQVVDGGKNFLVKLNCNSCSCLFWDLEEISCAHALIVIRSLNLNPYAFVSQY 564

Query: 151 YFSSTLLSTYKGFVYPIGNHSHWSSVDVDVNVLPPIVKRQVGRPRKQRMLSIGEKKKNLN 210
           Y+++ L +TY G V  IGNH+ WS V+V+ N+LPPI +R  GRPRK+R+ SIGE  K+ +
Sbjct: 565 YYATVLCATYGGLVRSIGNHTDWSVVEVNDNILPPIFRRPTGRPRKRRIPSIGEVSKS-S 624

BLAST of PI0025054 vs. NCBI nr
Match: XP_038880504.1 (uncharacterized protein LOC120072166 [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 1.6e-42
Identity = 92/126 (73.02%), Postives = 105/126 (83.33%), Query Frame = 0

Query: 91  VNPINNKEYKVVDG----AVNLVSRSCNCRVWDLEEISYAHACAVLHGVNLDIYAFVSNY 150
           V+PINN+EYKV+DG     VNL  +SC+CRVWDL EI  AHACAV+ G+NLDIY FV +Y
Sbjct: 134 VDPINNEEYKVIDGDNHFLVNLAYKSCSCRVWDLVEIPCAHACAVICGLNLDIYTFVLDY 193

Query: 151 YFSSTLLSTYKGFVYPIGNHSHWSSVDVDVNVLPPIVKRQVGRPRKQRMLSIGEKKKNLN 210
           YF STLLSTYKG VYPIGNHS W S+DV VNVLPPIVKR VGRPRKQR+LSIGEKK++ +
Sbjct: 194 YFCSTLLSTYKGSVYPIGNHSDWRSIDVGVNVLPPIVKRPVGRPRKQRILSIGEKKRS-S 253

Query: 211 KCSRYH 213
           KCSR H
Sbjct: 254 KCSRCH 258

BLAST of PI0025054 vs. NCBI nr
Match: XP_038907134.1 (uncharacterized protein LOC120092945 [Benincasa hispida])

HSP 1 Score: 170.2 bits (430), Expect = 1.9e-38
Identity = 87/130 (66.92%), Postives = 106/130 (81.54%), Query Frame = 0

Query: 84  KNFEFKTVNPINNKEYKVVDG----AVNLVSRSCNCRVWDLEEISYAHACAVLHGVNLDI 143
           +NF+   V+ INN+EYKVVDG     VN++S+SC+C  WDLEEI  AHACAVL  +NLD 
Sbjct: 564 RNFK---VDSINNEEYKVVDGDNHYVVNVISKSCSCCFWDLEEIPCAHACAVLSELNLDS 623

Query: 144 YAFVSNYYFSSTLLSTYKGFVYPIGNHSHWSSVDVDVNVLPPIVKRQVGRPRKQRMLSIG 203
           YAFVS+YYFS+T  STYK  ++PIGNHS WSSVDVD NVLPPIVKRQVGRPRKQR+LS+G
Sbjct: 624 YAFVSDYYFSNTFSSTYKRSIHPIGNHSDWSSVDVDGNVLPPIVKRQVGRPRKQRILSMG 683

Query: 204 EKKKNLNKCS 210
           E++ ++ KCS
Sbjct: 684 EERSHM-KCS 689

BLAST of PI0025054 vs. NCBI nr
Match: XP_038907134.1 (uncharacterized protein LOC120092945 [Benincasa hispida])

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-25
Identity = 76/157 (48.41%), Postives = 95/157 (60.51%), Query Frame = 0

Query: 1   MNEGQNVVEIHEHKDVAWFLALV----------------------NVVSSGPENFLSVVP 60
           MN+ QN+VEIHE KDVAWFL LV                      +VVSS  EN+LS+VP
Sbjct: 64  MNKVQNIVEIHEDKDVAWFLTLVKEQSTRHPLVAHVTSMCLEGSSSVVSSEAENYLSIVP 123

Query: 61  SSTPLIGDDNFQVIMDIHIDRDLKENDLFASKEILSNCFNFIAVKKNFEFKTVNPINNK- 120
            S P+I DD+FQVIMDIHI RDLKE D+FASKEILS CF +IAVKKNFEFKT+   +   
Sbjct: 124 YSMPMI-DDDFQVIMDIHIARDLKEKDVFASKEILSKCFYYIAVKKNFEFKTLRSNSRSI 183

Query: 121 EYKVVDGAVNLVSRSCNCR---VWDLEEISYAHACAV 132
           E++ V        R+   +   +W L +    H C++
Sbjct: 184 EFRCVQDGCQWYVRASRYKASDLWMLRKFIDIHDCSM 219


HSP 2 Score: 151.8 bits (382), Expect = 6.8e-33
Identity = 76/106 (71.70%), Postives = 84/106 (79.25%), Query Frame = 0

Query: 91  VNPINNKEYKVVDG----AVNLVSRSCNCRVWDLEEISYAHACAVLHGVNLDIYAFVSNY 150
           V+PINNKEYKVV G     VNL S+ C+CRVW+L EI  AHACA++ G+NLDIYAFV +Y
Sbjct: 25  VDPINNKEYKVVHGDNHLLVNLASKLCSCRVWNLVEIPCAHACAIIRGLNLDIYAFVLDY 84

Query: 151 YFSSTLLSTYKGFVYPIGNHSHWSSVDVDVNVLPPIVKRQVGRPRK 193
           YF STLLSTYKG VYPIGNHS   SVDV VNVLPPIVKR  GRP K
Sbjct: 85  YFFSTLLSTYKGSVYPIGNHSELRSVDVGVNVLPPIVKRLAGRPHK 130

BLAST of PI0025054 vs. NCBI nr
Match: XP_022156698.1 (uncharacterized protein LOC111023543 [Momordica charantia])

HSP 1 Score: 135.6 bits (340), Expect = 5.1e-28
Identity = 68/118 (57.63%), Postives = 87/118 (73.73%), Query Frame = 0

Query: 90  TVNPINNKEYKVVDGA----VNLVSRSCNCRVWDLEEISYAHACAVLHGVNLDIYAFVSN 149
           +V+PINN E++V+  A    VNL S+SC CRVWDLEEI  AHA AV+  ++L+ Y++VS 
Sbjct: 223 SVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNHYSYVSE 282

Query: 150 YYFSSTLLSTYKGFVYPIGNHSHWSSVDVDVNVLPPIVKRQVGRPRKQRMLSIGEKKK 204
           YY SS LL TY G + P+GNH  W SV +DVNVLPPI+KR   RP+KQR+ SIGE +K
Sbjct: 283 YYLSSRLLFTYNGSIRPVGNHLDWGSVAIDVNVLPPIIKRPARRPQKQRIPSIGEVEK 340

BLAST of PI0025054 vs. NCBI nr
Match: XP_008467000.1 (PREDICTED: uncharacterized protein LOC103504407, partial [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-27
Identity = 65/126 (51.59%), Postives = 93/126 (73.81%), Query Frame = 0

Query: 91  VNPINNKEYKVVDG----AVNLVSRSCNCRVWDLEEISYAHACAVLHGVNLDIYAFVSNY 150
           VN IN+ E++V++G     V L  +SC CRVWDL++I  AHA AVL G +++ Y+FVS Y
Sbjct: 1   VNAINDVEFQVIEGRKQFIVRLDCKSCTCRVWDLDKIPCAHALAVLRGRSMNTYSFVSKY 60

Query: 151 YFSSTLLSTYKGFVYPIGNHSHWSSVDVDVNVLPPIVKRQVGRPRKQRMLSIGEKKKNLN 210
           + SSTL+STY G V P+GNH++W S+ ++ N+LPP  KR+ G+ +KQR+LSIGEKK + +
Sbjct: 61  FLSSTLISTYTGSVRPVGNHANWKSIGIENNILPPTFKRRAGQLQKQRILSIGEKKSH-S 120

Query: 211 KCSRYH 213
           +CS  H
Sbjct: 121 RCSHCH 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DRB52.5e-2857.63uncharacterized protein LOC111023543 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A1S3CSI65.5e-2851.59uncharacterized protein LOC103504407 OS=Cucumis melo OX=3656 GN=LOC103504407 PE=... [more]
A0A5A7SST53.5e-2752.42MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... [more]
A0A5D3BVP43.5e-2752.42SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7V6N44.6e-2753.23SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
Match NameE-valueIdentityDescription
XP_038880504.11.6e-4273.02uncharacterized protein LOC120072166 [Benincasa hispida][more]
XP_038907134.11.9e-3866.92uncharacterized protein LOC120092945 [Benincasa hispida][more]
XP_038907134.11.4e-2548.41uncharacterized protein LOC120092945 [Benincasa hispida][more]
XP_022156698.15.1e-2857.63uncharacterized protein LOC111023543 [Momordica charantia][more]
XP_008467000.11.1e-2751.59PREDICTED: uncharacterized protein LOC103504407, partial [Cucumis melo][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0025054.1PI0025054.1mRNA