PI0024975 (gene) Melon (PI 482460) v1

Overview


Name	PI0024975
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr05: 15866370 .. 15866669 (+)
RNA-Seq Expression	PI0024975
Synteny	PI0024975

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACGCCGGCGAATCGCCGACCTGTCCAGTGGTTCCAGTTCCAGCCTGCGTCCAAGCTCCAATCTGTTCGAGTCTCTGACAGTGGTTCCGATGCCGACAAATCAGGTCAGTCCTGCGACGAGCATGTGGGCGGCAAAACTGGGATTCGGGTGTTGGCGTGCAACTGGGTTTCGGCGCGATGGAGGACTAGCGAAGGGGAGACGAAGGTGAGAATGGGAGAGGAAAGAGAAGAATATGAGAACGGGGGAAGGGACTAACGGAGAAGAAGAAAGAAGACGAGAATGGTTGAGGGTTTAG

mRNA sequence

ATGAGACGCCGGCGAATCGCCGACCTGTCCAGTGGTTCCAGTTCCAGCCTGCGTCCAAGCTCCAATCTGTTCGAGTCTCTGACAGTGGTTCCGATGCCGACAAATCAGGTCAGTCCTGCGACGAGCATGTGGGCGGCAAAACTGGGATTCGGGTGTTGGCGTGCAACTGGGAAAGAGAAGAATATGAGAACGGGGGAAGGGACTAACGGAGAAGAAGAAAGAAGACGAGAATGGTTGAGGGTTTAG

Coding sequence (CDS)

ATGAGACGCCGGCGAATCGCCGACCTGTCCAGTGGTTCCAGTTCCAGCCTGCGTCCAAGCTCCAATCTGTTCGAGTCTCTGACAGTGGTTCCGATGCCGACAAATCAGGTCAGTCCTGCGACGAGCATGTGGGCGGCAAAACTGGGATTCGGGTGTTGGCGTGCAACTGGGAAAGAGAAGAATATGAGAACGGGGGAAGGGACTAACGGAGAAGAAGAAAGAAGACGAGAATGGTTGAGGGTTTAG

Protein sequence

MRRRRIADLSSGSSSSLRPSSNLFESLTVVPMPTNQVSPATSMWAAKLGFGCWRATGKEKNMRTGEGTNGEEERRREWLRV

Homology

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BLAST of PI0024975 vs. ExPASy TrEMBL
Match: A0A0A0LLB1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G148420 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.5e-21
Identity = 69/102 (67.65%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1   MRRRRIADLSSGSSSSLRPSSNLFESLTVVPMPTNQVSPA---TSMWAAKLGFGCWRATG 60
           MRRRRI DLSSGSSSSLRP SNLFESLTV P PTNQVSPA   TSMW AKL FGCWRATG
Sbjct: 1   MRRRRITDLSSGSSSSLRPVSNLFESLTVAPTPTNQVSPAELTTSMWEAKLVFGCWRATG 60

Query: 61  ------------------KEKNMRTGEGTNGEEERRREWLRV 82
                             KE+N   GEGTNGEE RRRE LRV
Sbjct: 61  LGRRRTSEGEKELRMGEEKEEN-ENGEGTNGEEGRRRERLRV 101

The following BLAST results are available for this feature:

BLAST of PI0024975 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLB1	2.5e-21	67.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G148420 PE=4 SV=1	[more]

BLAST of PI0024975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of PI0024975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024975.1	PI0024975.1	mRNA