PI0024954 (gene) Melon (PI 482460) v1

Overview


Name	PI0024954
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA binding protein
Location	chr06: 5770476 .. 5771168 (-)
RNA-Seq Expression	PI0024954
Synteny	PI0024954

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCGCCAACACTCCAACCATCTTCAATCAAACTCCATTTCTCACTGTCAAGAATGCGGAATCTCTCAATCCACCTGTTGGATCCTCCACAATGTCCGTCACAAAGCCACCTTCCGTCGTCTCTGCACTAATTGTGTCCTCAAGCACAATCTCTCCCGTTTTTGTCCTCTTTGCTTTGATGTTTACGACGATTCAACTCCTCCGCCGTCTCATCACCGAGTTATGTGCTTCAGATGCCCTTCAATCTCTCATCTCTCTTGCGTTTCCTTTCGATTTTCCTCTACCTTCCTATGCCCTCTCTGCTCCGATCCAAGTTTTGTCTTCTTCGATGGTTTTGACTCCGGCGGCGGCCTTTGTCAATCTGAGTCTACTGTCGCCTTTTTAGCCGGAAAAAACGTTGATGCTAAATCAGGGAAAGCGATTGTCGCAGCAGCTCGTGTGTCCGCTCAATCCATGAGGAGAGCAGCTCTTGACGCTAGGGCTGTTGCGGAGACGAAGATCAAGAATGCTGCGTTTGCGAAGAAACAAGCTACTCTCGCATTGGAACGGCTTGCGTATCTTGTTCTTCAGGAGAAGGATAAAAATGGATATTCTAAAAGTAATGGAGATGCTGTTGCTAGTGAGAGGAAGGTTGAAGAAGAAGAATCCAAGCTACAGGAGAAAGAGGTAACCGCCATTTTTGATCTATGA

mRNA sequence

ATGAATCGCCAACACTCCAACCATCTTCAATCAAACTCCATTTCTCACTGTCAAGAATGCGGAATCTCTCAATCCACCTGTTGGATCCTCCACAATGTCCGTCACAAAGCCACCTTCCGTCGTCTCTGCACTAATTGTGTCCTCAAGCACAATCTCTCCCGTTTTTGTCCTCTTTGCTTTGATGTTTACGACGATTCAACTCCTCCGCCGTCTCATCACCGAGTTATGTGCTTCAGATGCCCTTCAATCTCTCATCTCTCTTGCGTTTCCTTTCGATTTTCCTCTACCTTCCTATGCCCTCTCTGCTCCGATCCAAGTTTTGTCTTCTTCGATGGTTTTGACTCCGGCGGCGGCCTTTGTCAATCTGAGTCTACTGTCGCCTTTTTAGCCGGAAAAAACGTTGATGCTAAATCAGGGAAAGCGATTGTCGCAGCAGCTCGTGTGTCCGCTCAATCCATGAGGAGAGCAGCTCTTGACGCTAGGGCTGTTGCGGAGACGAAGATCAAGAATGCTGCGTTTGCGAAGAAACAAGCTACTCTCGCATTGGAACGGCTTGCGTATCTTGTTCTTCAGGAGAAGGATAAAAATGGATATTCTAAAAGTAATGGAGATGCTGTTGCTAGTGAGAGGAAGGTTGAAGAAGAAGAATCCAAGCTACAGGAGAAAGAGGTAACCGCCATTTTTGATCTATGA

Coding sequence (CDS)

ATGAATCGCCAACACTCCAACCATCTTCAATCAAACTCCATTTCTCACTGTCAAGAATGCGGAATCTCTCAATCCACCTGTTGGATCCTCCACAATGTCCGTCACAAAGCCACCTTCCGTCGTCTCTGCACTAATTGTGTCCTCAAGCACAATCTCTCCCGTTTTTGTCCTCTTTGCTTTGATGTTTACGACGATTCAACTCCTCCGCCGTCTCATCACCGAGTTATGTGCTTCAGATGCCCTTCAATCTCTCATCTCTCTTGCGTTTCCTTTCGATTTTCCTCTACCTTCCTATGCCCTCTCTGCTCCGATCCAAGTTTTGTCTTCTTCGATGGTTTTGACTCCGGCGGCGGCCTTTGTCAATCTGAGTCTACTGTCGCCTTTTTAGCCGGAAAAAACGTTGATGCTAAATCAGGGAAAGCGATTGTCGCAGCAGCTCGTGTGTCCGCTCAATCCATGAGGAGAGCAGCTCTTGACGCTAGGGCTGTTGCGGAGACGAAGATCAAGAATGCTGCGTTTGCGAAGAAACAAGCTACTCTCGCATTGGAACGGCTTGCGTATCTTGTTCTTCAGGAGAAGGATAAAAATGGATATTCTAAAAGTAATGGAGATGCTGTTGCTAGTGAGAGGAAGGTTGAAGAAGAAGAATCCAAGCTACAGGAGAAAGAGGTAACCGCCATTTTTGATCTATGA

Protein sequence

MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDKNGYSKSNGDAVASERKVEEEESKLQEKEVTAIFDL

Homology

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BLAST of PI0024954 vs. ExPASy TrEMBL
Match: A0A0A0L5G4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 6.2e-118
Identity = 220/230 (95.65%), Postives = 224/230 (97.39%), Query Frame = 0


Query: 1   MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60
           MNRQHSNHLQSNSISHCQ+CGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF
Sbjct: 66  MNRQHSNHLQSNSISHCQQCGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 125

Query: 61  DVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPSFVFFDGFDSGGGLC 120
           DVY+DSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDP FVFFDGFDSGG LC
Sbjct: 126 DVYEDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGGSLC 185

Query: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATL 180
           QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATL
Sbjct: 186 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATL 245

Query: 181 ALERLAYLVLQEKDKNGYSKSNGDAVASERKVEEEESKLQEKEVTAIFDL 231
           ALE+LAYLVLQEKDKNGYSKSNGDAV SERKVEEEE KLQEK+VTAIFDL
Sbjct: 246 ALEQLAYLVLQEKDKNGYSKSNGDAVDSERKVEEEEYKLQEKDVTAIFDL 295

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BLAST of PI0024954 vs. ExPASy TrEMBL
Match: A0A5A7U9X0 (DNA binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00230 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 3.9e-112
Identity = 215/230 (93.48%), Postives = 219/230 (95.22%), Query Frame = 0


Query: 1   MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60
           MNRQ  NHLQ+NSISHCQECGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF
Sbjct: 1   MNRQ-LNHLQTNSISHCQECGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60

Query: 61  DVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPSFVFFDGFDSGGGLC 120
           DVY+DSTPPPSHHRVMC+RCPSISHLSCVSFRFSSTFLCPLCSDP FVFFDGFDSG  L 
Sbjct: 61  DVYEDSTPPPSHHRVMCYRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGVSLR 120

Query: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATL 180
           QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATL
Sbjct: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATL 180

Query: 181 ALERLAYLVLQEKDKNGYSKSNGDAVASERKVEEEESKLQEKEVTAIFDL 231
           ALE+LAYLVLQEKDKNGYSKSNGDAVASER VEEEE KL EKEVTAIFDL
Sbjct: 181 ALEQLAYLVLQEKDKNGYSKSNGDAVASERNVEEEEYKLHEKEVTAIFDL 229

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BLAST of PI0024954 vs. ExPASy TrEMBL
Match: A0A1S4DSP5 (uncharacterized protein LOC103483924 OS=Cucumis melo OX=3656 GN=LOC103483924 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.2e-109
Identity = 209/229 (91.27%), Postives = 215/229 (93.89%), Query Frame = 0


Query: 1   MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60
           MNRQ  NHLQ+NSISHCQECGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF
Sbjct: 1   MNRQ-LNHLQTNSISHCQECGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60

Query: 61  DVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPSFVFFDGFDSGGGLC 120
           DVY+DSTPPPSHHRVMC+RCPSISHLSCVSFRFSSTFLCPLCSDP FVFFDGFDSG  L 
Sbjct: 61  DVYEDSTPPPSHHRVMCYRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGVSLR 120

Query: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATL 180
           QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATL
Sbjct: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATL 180

Query: 181 ALERLAYLVLQEKDKNGYSKSNGDAVASERKVEEEESKLQEKEVTAIFD 230
           ALE+LAYLVLQEKDKNGYSKSNGDAVASER VEEEE KL EKE   +F+
Sbjct: 181 ALEQLAYLVLQEKDKNGYSKSNGDAVASERNVEEEEYKLHEKERVVLFN 228

[Close]

BLAST of PI0024954 vs. ExPASy TrEMBL
Match: E5GC39 (DNA binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 3.4e-108
Identity = 208/223 (93.27%), Postives = 212/223 (95.07%), Query Frame = 0


Query: 1   MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60
           MNRQ  NHLQ+NSISHCQECGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF
Sbjct: 1   MNRQ-LNHLQTNSISHCQECGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60

Query: 61  DVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPSFVFFDGFDSGGGLC 120
           DVY+DSTPPPSHHRVMC+RCPSISHLSCVSFRFSSTFLCPLCSDP FVFFDGFDSG  L 
Sbjct: 61  DVYEDSTPPPSHHRVMCYRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGVSLR 120

Query: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATL 180
           QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATL
Sbjct: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATL 180

Query: 181 ALERLAYLVLQEKDKNGYSKSNGDAVASERKVEEEESKLQEKE 224
           ALE+LAYLVLQEKDKNGYSKSNGDAVASER VEEEE KL EKE
Sbjct: 181 ALEQLAYLVLQEKDKNGYSKSNGDAVASERNVEEEEYKLHEKE 222

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BLAST of PI0024954 vs. ExPASy TrEMBL
Match: A0A6J1GVZ7 (uncharacterized protein LOC111457661 OS=Cucurbita moschata OX=3662 GN=LOC111457661 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 3.5e-89
Identity = 179/229 (78.17%), Postives = 198/229 (86.46%), Query Frame = 0


Query: 1   MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60
           MNR H NHLQSNSIS+C ECGISQS CWILHNVR KA+FRRLCTNCVLK+NLSRFCPLCF
Sbjct: 55  MNRPHYNHLQSNSISNCHECGISQSVCWILHNVRFKASFRRLCTNCVLKNNLSRFCPLCF 114

Query: 61  DVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPSFVFFDGFDSGGGLC 120
           D+YDDSTPP SH RVMCFRCPSISH+SC SFRFSSTFLCP+CSDP F FFDGFDS  GL 
Sbjct: 115 DIYDDSTPPSSHQRVMCFRCPSISHVSCASFRFSSTFLCPVCSDPCFAFFDGFDS-DGLR 174

Query: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATL 180
           QSE  VA LAG+  D KS KAIVAAARV+AQSMRRAA DARAVAE KI+NA FAKKQATL
Sbjct: 175 QSEPAVAVLAGR--DGKSAKAIVAAARVAAQSMRRAAADARAVAEMKIRNAVFAKKQATL 234

Query: 181 ALERLAYLVLQEKDKNGYSKSNGDAVASERKVEEEESKLQEKEVTAIFD 230
           ALERLA+LVLQEKD+NGY+K+NG+A A   + EEEE++LQ + VTAI +
Sbjct: 235 ALERLAFLVLQEKDRNGYAKTNGNAAAGAVE-EEEETELQGEVVTAILE 279

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BLAST of PI0024954 vs. NCBI nr
Match: KAE8650412.1 (hypothetical protein Csa_010702 [Cucumis sativus])

HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-117
Identity = 220/230 (95.65%), Postives = 224/230 (97.39%), Query Frame = 0


Query: 1   MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60
           MNRQHSNHLQSNSISHCQ+CGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF
Sbjct: 1   MNRQHSNHLQSNSISHCQQCGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60

Query: 61  DVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPSFVFFDGFDSGGGLC 120
           DVY+DSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDP FVFFDGFDSGG LC
Sbjct: 61  DVYEDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGGSLC 120

Query: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATL 180
           QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATL
Sbjct: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATL 180

Query: 181 ALERLAYLVLQEKDKNGYSKSNGDAVASERKVEEEESKLQEKEVTAIFDL 231
           ALE+LAYLVLQEKDKNGYSKSNGDAV SERKVEEEE KLQEK+VTAIFDL
Sbjct: 181 ALEQLAYLVLQEKDKNGYSKSNGDAVDSERKVEEEEYKLQEKDVTAIFDL 230

[Close]

BLAST of PI0024954 vs. NCBI nr
Match: XP_004147629.1 (uncharacterized protein LOC101204799 [Cucumis sativus])

HSP 1 Score: 420.2 bits (1079), Expect = 1.1e-113
Identity = 213/223 (95.52%), Postives = 217/223 (97.31%), Query Frame = 0


Query: 1   MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60
           MNRQHSNHLQSNSISHCQ+CGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF
Sbjct: 1   MNRQHSNHLQSNSISHCQQCGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60

Query: 61  DVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPSFVFFDGFDSGGGLC 120
           DVY+DSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDP FVFFDGFDSGG LC
Sbjct: 61  DVYEDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGGSLC 120

Query: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATL 180
           QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATL
Sbjct: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATL 180

Query: 181 ALERLAYLVLQEKDKNGYSKSNGDAVASERKVEEEESKLQEKE 224
           ALE+LAYLVLQEKDKNGYSKSNGDAV SERKVEEEE KLQEK+
Sbjct: 181 ALEQLAYLVLQEKDKNGYSKSNGDAVDSERKVEEEEYKLQEKD 223

[Close]

BLAST of PI0024954 vs. NCBI nr
Match: KAA0052154.1 (DNA binding protein [Cucumis melo var. makuwa] >TYK05119.1 DNA binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 414.1 bits (1063), Expect = 8.0e-112
Identity = 215/230 (93.48%), Postives = 219/230 (95.22%), Query Frame = 0


Query: 1   MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60
           MNRQ  NHLQ+NSISHCQECGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF
Sbjct: 1   MNRQ-LNHLQTNSISHCQECGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60

Query: 61  DVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPSFVFFDGFDSGGGLC 120
           DVY+DSTPPPSHHRVMC+RCPSISHLSCVSFRFSSTFLCPLCSDP FVFFDGFDSG  L 
Sbjct: 61  DVYEDSTPPPSHHRVMCYRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGVSLR 120

Query: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATL 180
           QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATL
Sbjct: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATL 180

Query: 181 ALERLAYLVLQEKDKNGYSKSNGDAVASERKVEEEESKLQEKEVTAIFDL 231
           ALE+LAYLVLQEKDKNGYSKSNGDAVASER VEEEE KL EKEVTAIFDL
Sbjct: 181 ALEQLAYLVLQEKDKNGYSKSNGDAVASERNVEEEEYKLHEKEVTAIFDL 229

[Close]

BLAST of PI0024954 vs. NCBI nr
Match: XP_016899011.1 (PREDICTED: uncharacterized protein LOC103483924 [Cucumis melo])

HSP 1 Score: 403.7 bits (1036), Expect = 1.1e-108
Identity = 209/229 (91.27%), Postives = 215/229 (93.89%), Query Frame = 0


Query: 1   MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60
           MNRQ  NHLQ+NSISHCQECGISQS CWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF
Sbjct: 1   MNRQ-LNHLQTNSISHCQECGISQSACWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60

Query: 61  DVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPSFVFFDGFDSGGGLC 120
           DVY+DSTPPPSHHRVMC+RCPSISHLSCVSFRFSSTFLCPLCSDP FVFFDGFDSG  L 
Sbjct: 61  DVYEDSTPPPSHHRVMCYRCPSISHLSCVSFRFSSTFLCPLCSDPRFVFFDGFDSGVSLR 120

Query: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATL 180
           QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATL
Sbjct: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATL 180

Query: 181 ALERLAYLVLQEKDKNGYSKSNGDAVASERKVEEEESKLQEKEVTAIFD 230
           ALE+LAYLVLQEKDKNGYSKSNGDAVASER VEEEE KL EKE   +F+
Sbjct: 181 ALEQLAYLVLQEKDKNGYSKSNGDAVASERNVEEEEYKLHEKERVVLFN 228

[Close]

BLAST of PI0024954 vs. NCBI nr
Match: XP_038902666.1 (uncharacterized protein LOC120089301 [Benincasa hispida])

HSP 1 Score: 402.9 bits (1034), Expect = 1.8e-108
Identity = 206/229 (89.96%), Postives = 215/229 (93.89%), Query Frame = 0


Query: 1   MNRQHSNHLQSNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCF 60
           MNR H NHLQSNS+SHCQECGISQS CWILHNVR KA+FRRLCTNCVLKHNLSRFCPLCF
Sbjct: 1   MNRSHCNHLQSNSVSHCQECGISQSACWILHNVRLKASFRRLCTNCVLKHNLSRFCPLCF 60

Query: 61  DVYDDSTPPPSHHRVMCFRCPSISHLSCVSFRFSSTFLCPLCSDPSFVFFDGFDSGGGLC 120
           DVYDDSTPPPSH RVMCFRCPSISHLSC SFRFSSTFLCPLCSDP F FFDGFDS GGLC
Sbjct: 61  DVYDDSTPPPSHQRVMCFRCPSISHLSCASFRFSSTFLCPLCSDPCFAFFDGFDS-GGLC 120

Query: 121 QSESTVAFLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATL 180
           QSESTVAFLA +NVDAKS KAIVAAARVSAQSMRRAALDARAVAE KIKNAAFAKKQATL
Sbjct: 121 QSESTVAFLARRNVDAKSAKAIVAAARVSAQSMRRAALDARAVAEMKIKNAAFAKKQATL 180

Query: 181 ALERLAYLVLQEKDKNGYSKSNGDAVASERKVEEEESKLQEKEVTAIFD 230
           ALERLAYLVLQEKD+NGY+K+NGDAVA ER VEEE+SKLQEKEVT+IF+
Sbjct: 181 ALERLAYLVLQEKDRNGYAKTNGDAVAGERTVEEEDSKLQEKEVTSIFN 228

[Close]

BLAST of PI0024954 vs. TAIR 10
Match: AT1G09520.1 (LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 103.2 bits (256), Expect = 2.8e-22
Identity = 73/216 (33.80%), Postives = 111/216 (51.39%), Query Frame = 0


Query: 11  SNSISHCQECGISQSTCWILHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPP 70
           +NS   C +CG   S  W++H VR +A+ R  CT+C+L+++ + FCP CF +YD S  PP
Sbjct: 20  ANSTERCDDCG--SSDAWVIHTVRLRASLRFFCTHCLLRNHPASFCPGCFALYDSS--PP 79

Query: 71  SHHRVMCF--RCPSISHLSCVSFRFSSTFLCPLCSDP-SFVFFDGFDSGGGLCQSESTVA 130
           S  RV C    C S++H+ C       ++LCP C DP SF FF       G         
Sbjct: 80  SFRRVSCSIKGCHSLTHIHCAGDESHLSYLCPPCRDPNSFSFFRPIVDENG--------- 139

Query: 131 FLAGKNVDAKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAY 190
               + VD    +A + AA+++A SM +A + A+   + + K AA AKK+A  ALE++  
Sbjct: 140 ---SRFVDKALSEAFLCAAKIAASSMNKAVMTAKCETDRRGKEAALAKKRAREALEQVVM 199

Query: 191 LVLQEKDKNGYSKSNGDAVASERKVEEEESKLQEKE 224
           L  +EK ++   K     V  + K+    +    KE
Sbjct: 200 LDAKEKARSVVPKLKEAPVDQKPKLSPASNGATVKE 219

[Close]

BLAST of PI0024954 vs. TAIR 10
Match: AT3G17460.1 (PHD finger family protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-15
Identity = 60/187 (32.09%), Postives = 90/187 (48.13%), Query Frame = 0


Query: 30  LHNVRHKATFRRLCTNCVLKHNLSRFCPLCFDVYDDSTPPPSHHRVMCFRCPSISHLSCV 89
           +H V     FRRLCT+C+LK     FC +CF+++D++ PP +  R++C  CPS +HLSC 
Sbjct: 21  IHTVIKTGAFRRLCTDCLLKEYREHFCSVCFNLFDNAVPPQA--RIICVNCPSSTHLSCS 80

Query: 90  SFRFS--------------STFLCPLCSDPSFVFFDGFDSGGGLCQSESTVAFLAGKNVD 149
           +   S              S+F C  CS+P+F FF          +S           + 
Sbjct: 81  TQPPSSSAASSSSSAPPPASSFTCQPCSNPNFTFFP---------KSRVNEDVPDETPLT 140

Query: 150 AKSGKAIVAAARVSAQSMRRAALDARAVAETKIKNAAFAKKQATLALERLAYLVLQEKDK 203
            KS  A+VAA  +S  +M +A    +  A  KI  A  AK +A  AL  L  +V+++   
Sbjct: 141 PKSAMALVAAGNISVANMNKAVALLKEEALKKIIAAKTAKLRAKGALTNLQDIVIRQSKV 196

The following BLAST results are available for this feature:

BLAST of PI0024954 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024954 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5G4	6.2e-118	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171130 PE=4 SV=1	[more]
A0A5A7U9X0	3.9e-112	93.48	DNA binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769...	[more]
A0A1S4DSP5	5.2e-109	91.27	uncharacterized protein LOC103483924 OS=Cucumis melo OX=3656 GN=LOC103483924 PE=...	[more]
E5GC39	3.4e-108	93.27	DNA binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A6J1GVZ7	3.5e-89	78.17	uncharacterized protein LOC111457661 OS=Cucurbita moschata OX=3662 GN=LOC1114576...	[more]

BLAST of PI0024954 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650412.1	1.3e-117	95.65	hypothetical protein Csa_010702 [Cucumis sativus]	[more]
XP_004147629.1	1.1e-113	95.52	uncharacterized protein LOC101204799 [Cucumis sativus]	[more]
KAA0052154.1	8.0e-112	93.48	DNA binding protein [Cucumis melo var. makuwa] >TYK05119.1 DNA binding protein [...	[more]
XP_016899011.1	1.1e-108	91.27	PREDICTED: uncharacterized protein LOC103483924 [Cucumis melo]	[more]
XP_038902666.1	1.8e-108	89.96	uncharacterized protein LOC120089301 [Benincasa hispida]	[more]

BLAST of PI0024954 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09520.1	2.8e-22	33.80	LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12...	[more]
AT3G17460.1	1.5e-15	32.09	PHD finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 205..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..217
None	No IPR available	PANTHER	PTHR34451	PHD FINGER FAMILY PROTEIN	coord: 1..225
None	No IPR available	PANTHER	PTHR34451:SF7	PHD FINGER FAMILY PROTEIN	coord: 1..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024954.1	PI0024954.1	mRNA