PI0024910 (gene) Melon (PI 482460) v1

Overview
NamePI0024910
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Description40S ribosomal protein S21
Locationchr06: 5018720 .. 5020779 (-)
RNA-Seq ExpressionPI0024910
SyntenyPI0024910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTCTTCTAAATTTTAGGGTTTCTTCAGCACGCCTCTTTCTCCCTTTCGGATAGTTCGTTTCCTCTGTTGTGCTTGCGGTTTGTTCTCTCTCTGTAGTCTTAAGAATCATTTGCTCTTTTACTTCTTCAATTTGATTCGAATTTGTGTTCACTAATCTGATTCCAAAATTTAGGGTTGATTCACTTATCAAGATGCAGAACGAAGAGGGTAAAATCACAGAGCTTTATATTCCCAGAAAATGGTTCGTAATAGTATTATTTATCTAACTTTGATGATTCTGTCGCTAATTTTCATGTGGGTTGAACTTTTTCATGGGTTATTGTGTTGTTGATGCAGCTCCGCAACGAATCGGCTGATTACTTCCAAGGACCATGCTTCTGTTCAGATCAACATTGGGCATTTGGATGAGAATGGCATCTACAGTGGGCAATTTTCTACTTTTGCTCTCTGTGGTTTCATTCGGGCGCAGGTGATTGTCCTTCCCCTCTATTTTTCTCCTTGTTGTCAGTTTTTAATCTGTGATATATTTGAGCATTGACTTGGAACGGGGCATTTTATCTTTACTCTGTCTTGTTGCAAACAAAAAACTAATTTTCATGCTCTTTGTTGTGTTGAAAGTGTTGTTTAAGAGCGATGGATTGAACTTGGTTATGATTGAATCCGTCGGTATTGACTTTAGTTCTTCTAATAAAGGGAGTGCATTTGAGAATGACTTATTCTTCTTGACCATTTGATTATCTGCTAGCTGCTGGCTGTGTTTTTATATATAATAACAAACAGGTTTATTCAATCGTCTGTGATTCCTGTTGCCTGATATATTATGAAGCACCATTTTATGGACGGCTGTAGCTTGTAGTTAATTGAAACTAATCACGACTAAAAAAATGAAGAATATAATAAATTTAGAGTTGGACTAAATCATAGCCCTACAAAAGAAATCTTGAACATATCTAAACTACAATCTGTAGACATTAATCGAAAAGTACTAGATGAAAGCGAAAGAAAATGATAAGAAAGGGTAGAAGGTTGCATAAATGAGTCTCCAAAGGCCTTCTCCTCCTGCCTCTGCCCTCTTGCTTTCTCTTGAATGGTGGGAAAAGCCATTGTAGAATTATAATTAAAAGTTAAGACTAAATCATGGCCCTAGAAAAGAAATCTCAAATATAGCTAAACTACAGTCTGTAGACAATATAAAAATTCACTGATGGAAAATAAAAGAGAACGAGAAGAAAAGGTAGAAGCCTCAAAATTGAGTCTTGAAAGACCTTTGACATTTTGCTGTCTACTAGCTTCATCTTGAAGGGTGATAGAAGTCATTGTAGTGTAAGGAGTGGGAGTGTACAAAATTTTCATGTCCATAATCCATTATCTTGTTATTTCTTTCCTCATACTCTAGAATCTGGATTGAAACCGTACAAGATTTTCCTGTTCTTTTTAATATGGTGTTGATGCTGCCATGTAGCTGTCTAAAATCTTGCTGTATAGTTCAATCTCCATTCTTTGGAATCTGACCTGATGGGAGTGTTTGAGGCTTCTGTAGATATGATTTGATGTTTCCTATCATAGCTTGAACCATGTCTTTCGCTGTTGCTCGAATATTTCACCTACTTGACTGGGTTTTACATATTCCATTGCATTTTTCTGGCCTCATGGATGTTTGTCTTAATCCTCAACTTTCAAGTTCTCTACCTATGGTGATATTGATATACTCATGATGCTTTCTTTTATTCTTTGTAGGGAGATGCTGACAGTGCACTAGATCGTCTCTGGCAGAAGAAGAAAGTCGAAGTGCGTCAACAATAGATGATTGTGCCATTCTGGTTCATCTCTATATCAAAGTTTTCAAGTATAGAGATACACTTTTAAGATTTTTTGAACCACTCGTAGTTAAGTAGTTTCTTTTGACAATTTAAACTCATTAGTTTCTTTAAATGCAAACTCAACTTCATTGAGTCTGGACAAGCTCTGATGAGTCAAAAAGGACCAAAACTAAGTTGAATGAAATATGTTGAAGTTCATTTTCCATTAAAGATATTTTATCAGAGACTCTTTCAATCC

mRNA sequence

TTGTCTTCTAAATTTTAGGGTTTCTTCAGCACGCCTCTTTCTCCCTTTCGGATAGTTCGTTTCCTCTGTTGTGCTTGCGGGTTGATTCACTTATCAAGATGCAGAACGAAGAGGGTAAAATCACAGAGCTTTATATTCCCAGAAAATGCTCCGCAACGAATCGGCTGATTACTTCCAAGGACCATGCTTCTGTTCAGATCAACATTGGGCATTTGGATGAGAATGGCATCTACAGTGGGCAATTTTCTACTTTTGCTCTCTGTGGTTTCATTCGGGCGCAGGGAGATGCTGACAGTGCACTAGATCGTCTCTGGCAGAAGAAGAAAGTCGAAGTGCGTCAACAATAGATGATTGTGCCATTCTGGTTCATCTCTATATCAAAGTTTTCAAGTATAGAGATACACTTTTAAGATTTTTTGAACCACTCGTAGTTAAGTAGTTTCTTTTGACAATTTAAACTCATTAGTTTCTTTAAATGCAAACTCAACTTCATTGAGTCTGGACAAGCTCTGATGAGTCAAAAAGGACCAAAACTAAGTTGAATGAAATATGTTGAAGTTCATTTTCCATTAAAGATATTTTATCAGAGACTCTTTCAATCC

Coding sequence (CDS)

ATGCAGAACGAAGAGGGTAAAATCACAGAGCTTTATATTCCCAGAAAATGCTCCGCAACGAATCGGCTGATTACTTCCAAGGACCATGCTTCTGTTCAGATCAACATTGGGCATTTGGATGAGAATGGCATCTACAGTGGGCAATTTTCTACTTTTGCTCTCTGTGGTTTCATTCGGGCGCAGGGAGATGCTGACAGTGCACTAGATCGTCTCTGGCAGAAGAAGAAAGTCGAAGTGCGTCAACAATAG

Protein sequence

MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ
Homology
[Close]
BLAST of PI0024910 vs. ExPASy Swiss-Prot
Match: Q3E902 (40S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 9.1e-37
Identity = 69/81 (85.19%), Postives = 78/81 (96.30%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+Y+GQF+TFALCGF+RA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQ 82
          QGDADS +DRLWQKKKVE +Q
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQ 81

[Close]
BLAST of PI0024910 vs. ExPASy Swiss-Prot
Match: Q9M337 (40S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-35
Identity = 66/82 (80.49%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+Y+GQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADS +DRLWQKKKVE +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

[Close]
BLAST of PI0024910 vs. ExPASy Swiss-Prot
Match: P35687 (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 8.5e-35
Identity = 66/82 (80.49%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRA
Sbjct: 1  MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQK+K EV+QQ
Sbjct: 61 QGDADSALDRLWQKRKAEVKQQ 82

[Close]
BLAST of PI0024910 vs. ExPASy Swiss-Prot
Match: Q41852 (40S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.2e-34
Identity = 64/81 (79.01%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RA
Sbjct: 1  MQNEEGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQ 82
          QGDADS+LDRLWQKKK E++Q
Sbjct: 61 QGDADSSLDRLWQKKKAEIKQ 81

[Close]
BLAST of PI0024910 vs. ExPASy Swiss-Prot
Match: Q9SMI2 (40S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-24
Identity = 50/75 (66.67%), Postives = 67/75 (89.33%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYSGQFSTFALCGFIR 60
          MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+Y+G ++TFALCGF+R
Sbjct: 1  MQNDEGKIVDLYIPRKCSATNRLISATDHAAVQINVGHVDPNSGLYTGDYTTFALCGFVR 60

Query: 61 AQGDADSALDRLWQK 75
          + G++D+AL+RL  K
Sbjct: 61 SMGESDAALNRLCVK 75

[Close]
BLAST of PI0024910 vs. ExPASy TrEMBL
Match: A0A1S4DSM1 (40S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.7e-38
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIY+GQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of PI0024910 vs. ExPASy TrEMBL
Match: A0A5D3CXC9 (40S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001000 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.7e-38
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIY+GQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of PI0024910 vs. ExPASy TrEMBL
Match: A0A0A0L7W3 (40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.7e-38
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIY+GQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of PI0024910 vs. ExPASy TrEMBL
Match: A0A6J1CCM4 (40S ribosomal protein S21 OS=Momordica charantia OX=3673 GN=LOC111009501 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.9e-38
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIY+GQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of PI0024910 vs. ExPASy TrEMBL
Match: A0A6J1KDN2 (40S ribosomal protein S21 OS=Cucurbita maxima OX=3661 GN=LOC111494713 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.0e-38
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIY+GQFSTFALCG+IRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of PI0024910 vs. NCBI nr
Match: XP_004134210.2 (40S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_008458454.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_016898984.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_038879937.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906504.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906506.1 40S ribosomal protein S21-2 [Benincasa hispida] >KAA0049493.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa] >KGN57104.1 hypothetical protein Csa_010287 [Cucumis sativus] >TYK16172.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 3.6e-38
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIY+GQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of PI0024910 vs. NCBI nr
Match: XP_022138287.1 (40S ribosomal protein S21-2 [Momordica charantia] >XP_022138288.1 40S ribosomal protein S21-2 [Momordica charantia] >XP_022138289.1 40S ribosomal protein S21-2 [Momordica charantia])

HSP 1 Score: 166.8 bits (421), Expect = 8.0e-38
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIY+GQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of PI0024910 vs. NCBI nr
Match: XP_022930553.1 (40S ribosomal protein S21-2-like [Cucurbita moschata] >XP_023000447.1 40S ribosomal protein S21-2-like [Cucurbita maxima] >XP_023513574.1 40S ribosomal protein S21-2-like [Cucurbita pepo subsp. pepo] >KAG6593967.1 40S ribosomal protein S21-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026309.1 40S ribosomal protein S21-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.4 bits (420), Expect = 1.0e-37
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIY+GQFSTFALCG+IRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]
BLAST of PI0024910 vs. NCBI nr
Match: XP_004143089.1 (40S ribosomal protein S21-2 [Cucumis sativus] >XP_038875675.1 40S ribosomal protein S21-2-like [Benincasa hispida] >KGN47181.1 hypothetical protein Csa_021003 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 1.0e-37
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIY+GQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKAEVRQQ 82

[Close]
BLAST of PI0024910 vs. NCBI nr
Match: XP_022959410.1 (40S ribosomal protein S21-2 isoform X2 [Cucurbita moschata] >XP_023549096.1 40S ribosomal protein S21-2 [Cucurbita pepo subsp. pepo] >XP_023549097.1 40S ribosomal protein S21-2 [Cucurbita pepo subsp. pepo] >KAG7013636.1 40S ribosomal protein S21-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 78/82 (95.12%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIY+GQFSTFALCG+IRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSA+DRLWQKKKVEVRQQ
Sbjct: 61 QGDADSAIDRLWQKKKVEVRQQ 82

[Close]
BLAST of PI0024910 vs. TAIR 10
Match: AT5G27700.1 (Ribosomal protein S21e )

HSP 1 Score: 153.7 bits (387), Expect = 6.5e-38
Identity = 69/81 (85.19%), Postives = 78/81 (96.30%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+Y+GQF+TFALCGF+RA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQ 82
          QGDADS +DRLWQKKKVE +Q
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQ 81

[Close]
BLAST of PI0024910 vs. TAIR 10
Match: AT3G53890.1 (Ribosomal protein S21e )

HSP 1 Score: 149.8 bits (377), Expect = 9.4e-37
Identity = 66/82 (80.49%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+Y+GQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADS +DRLWQKKKVE +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

[Close]
BLAST of PI0024910 vs. TAIR 10
Match: AT3G53890.2 (Ribosomal protein S21e )

HSP 1 Score: 149.8 bits (377), Expect = 9.4e-37
Identity = 66/82 (80.49%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYSGQFSTFALCGFIRA 60
          M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+Y+GQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADS +DRLWQKKKVE +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

The following BLAST results are available for this feature:
BLAST of PI0024910 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3E9029.1e-3785.1940S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2[more]
Q9M3371.3e-3580.4940S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1[more]
P356878.5e-3580.4940S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3... [more]
Q418527.2e-3479.0140S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1[more]
Q9SMI21.0e-2466.6740S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1[more]
BLAST of PI0024910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DSM11.7e-3898.7840S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1[more]
A0A5D3CXC91.7e-3898.7840S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0L7W31.7e-3898.7840S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1[more]
A0A6J1CCM43.9e-3897.5640S ribosomal protein S21 OS=Momordica charantia OX=3673 GN=LOC111009501 PE=3 SV... [more]
A0A6J1KDN25.0e-3896.3440S ribosomal protein S21 OS=Cucurbita maxima OX=3661 GN=LOC111494713 PE=3 SV=1[more]
BLAST of PI0024910 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004134210.23.6e-3898.7840S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S rib... [more]
XP_022138287.18.0e-3897.5640S ribosomal protein S21-2 [Momordica charantia] >XP_022138288.1 40S ribosomal ... [more]
XP_022930553.11.0e-3796.3440S ribosomal protein S21-2-like [Cucurbita moschata] >XP_023000447.1 40S riboso... [more]
XP_004143089.11.0e-3797.5640S ribosomal protein S21-2 [Cucumis sativus] >XP_038875675.1 40S ribosomal prot... [more]
XP_022959410.11.8e-3795.1240S ribosomal protein S21-2 isoform X2 [Cucurbita moschata] >XP_023549096.1 40S ... [more]
BLAST of PI0024910 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27700.16.5e-3885.19Ribosomal protein S21e [more]
AT3G53890.19.4e-3780.49Ribosomal protein S21e [more]
AT3G53890.29.4e-3780.49Ribosomal protein S21e [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038579Ribosomal protein S21e superfamilyGENE3D3.30.1230.20coord: 1..81
e-value: 1.0E-41
score: 142.7
IPR001931Ribosomal protein S21ePIRSFPIRSF002148RPS21ecoord: 1..82
e-value: 3.2E-38
score: 127.7
IPR001931Ribosomal protein S21ePFAMPF01249Ribosomal_S21ecoord: 1..77
e-value: 1.6E-38
score: 130.6
IPR001931Ribosomal protein S21ePANTHERPTHR1044240S RIBOSOMAL PROTEIN S21coord: 1..82
NoneNo IPR availablePANTHERPTHR10442:SF1340S RIBOSOMAL PROTEIN S21coord: 1..82
IPR018279Ribosomal protein S21e, conserved sitePROSITEPS00996RIBOSOMAL_S21Ecoord: 11..19

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0024910.1PI0024910.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0003735 structural constituent of ribosome