Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTTCGTCACGAGCGCCTAAACACTTGTGGACGAGAGAGGAGTCCACCCTGGTTGAGTGCTTGATGGAGTTGGTCTCTGCTGGTGGTTGGAAGTCGGACAGCGGGACCTTTAGACTCGGTTATCTGGCACAGCTACAGAGAATGATGGCTGAGAAGCTACTAGGAACTAACATCCAGGGTTCCCCGACTATTGACTATCAGATAAAGACCCTCAAGAAGTCATTCCAGGCCATAACAGAAATGTGCGGCTCATCGTACAGTGGGTTCGGTTGGAACGATGAAATAAAGTGCATCATCACAGAGAAGGATATGTTCGACAATTGGGTGAAGGTAGGATATTTATTGTATCAACCGTTATTCGTTTCAAAATGGTAAAAAAATTAACGATTTATTTGAAAATTTCCACAGAGCCATCTTGCTGTTAAGGGCCTTCTAAACAAATTGTTTTCCTATTACAACAAGCTGAGCTACGTGTTTGGGAAAGATTGTGCTACAGTAGCACGCGCGGAGACGTTCACCAATGTGGGATCGAATGTGCCTAAAGGGTACGAGGAATTTCCCACTGATGATGGAAACAATGTGGAGATCCCTATGATGTACAGTCAAGGACTCAACATGTCGCCTAACGACATCATGGGCCCACGACCCAGTCGCTCGAGTGAGGGTAGGATTGGTTCAAGCCGATCGAAGAGGAAGCAGGGAGGCCAGACATTAAGAGACTGTGGAAATCATTCGCAATGCAATGGACTTCGCGAATGACCAGCTGAAAGCCATAGCAGAGTGACCTAATTTGCAACATCAAGATGAATGTGCCTCTCGTTTAGAAGTCATTAGCCAGTTGCAGGGGATCCCTGAATTGAGTTCTCGCGACAGGGTGCGCCTTATGCGGATACTTATGCGCAATGTGAATGACATGAAAGCATTCTTGTTGGTACCCGATGAGCTTAAACTGGACTACTGCACGGTCATTCTCGAAGAGAACGCTTGA
mRNA sequence
ATGGCAAGTTCGTCACGAGCGCCTAAACACTTGTGGACGAGAGAGGAGTCCACCCTGGTTGAGTGCTTGATGGAGTTGGTCTCTGCTGGTGGTTGGAAGTCGGACAGCGGGACCTTTAGACTCGGTTATCTGGCACAGCTACAGAGAATGATGGCTGAGAAGCTACTAGGAACTAACATCCAGGGTTCCCCGACTATTGACTATCAGATAAAGACCCTCAAGAAGTCATTCCAGGCCATAACAGAAATGTGCGGCTCATCGTACAGTGGGTTCGGTTGGAACGATGAAATAAAGTGCATCATCACAGAGAAGGATATGTTCGACAATTGGGTGAAGAGCCATCTTGCTGTTAAGGGCCTTCTAAACAAATTGTTTTCCTATTACAACAAGCTGAGCTACGTGTTTGGGAAAGATTGTGCTACAGTAGCACGCGCGGAGACGTTCACCAATGTGGGATCGAATGTGCCTAAAGGGTACGAGGAATTTCCCACTGATGATGGAAACAATGTGGAGATCCCTATGATGTACAGTCAAGGACTCAACATGTCGCCTAACGACATCATGGGCCCACGACCCAGTCGCTCGAGTGAGGAAGTCATTAGCCAGTTGCAGGGGATCCCTGAATTGAGTTCTCGCGACAGGGTGCGCCTTATGCGGATACTTATGCGCAATGTGAATGACATGAAAGCATTCTTGTTGGTACCCGATGAGCTTAAACTGGACTACTGCACGGTCATTCTCGAAGAGAACGCTTGA
Coding sequence (CDS)
ATGGCAAGTTCGTCACGAGCGCCTAAACACTTGTGGACGAGAGAGGAGTCCACCCTGGTTGAGTGCTTGATGGAGTTGGTCTCTGCTGGTGGTTGGAAGTCGGACAGCGGGACCTTTAGACTCGGTTATCTGGCACAGCTACAGAGAATGATGGCTGAGAAGCTACTAGGAACTAACATCCAGGGTTCCCCGACTATTGACTATCAGATAAAGACCCTCAAGAAGTCATTCCAGGCCATAACAGAAATGTGCGGCTCATCGTACAGTGGGTTCGGTTGGAACGATGAAATAAAGTGCATCATCACAGAGAAGGATATGTTCGACAATTGGGTGAAGAGCCATCTTGCTGTTAAGGGCCTTCTAAACAAATTGTTTTCCTATTACAACAAGCTGAGCTACGTGTTTGGGAAAGATTGTGCTACAGTAGCACGCGCGGAGACGTTCACCAATGTGGGATCGAATGTGCCTAAAGGGTACGAGGAATTTCCCACTGATGATGGAAACAATGTGGAGATCCCTATGATGTACAGTCAAGGACTCAACATGTCGCCTAACGACATCATGGGCCCACGACCCAGTCGCTCGAGTGAGGAAGTCATTAGCCAGTTGCAGGGGATCCCTGAATTGAGTTCTCGCGACAGGGTGCGCCTTATGCGGATACTTATGCGCAATGTGAATGACATGAAAGCATTCTTGTTGGTACCCGATGAGCTTAAACTGGACTACTGCACGGTCATTCTCGAAGAGAACGCTTGA
Protein sequence
MASSSRAPKHLWTREESTLVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTNIQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKCIITEKDMFDNWVKSHLAVKGLLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQGLNMSPNDIMGPRPSRSSEEVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVILEENA
Homology
BLAST of PI0024894 vs. ExPASy TrEMBL
Match:
A0A5A7UIE9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001660 PE=4 SV=1)
HSP 1 Score: 291.2 bits (744), Expect = 4.1e-75
Identity = 158/276 (57.25%), Postives = 190/276 (68.84%), Query Frame = 0
Query: 1 MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTN 60
MASSSR PKH WT+EE LVECL+ELV+AGGW+SD+GTFR YL QL RMMA K+ G+N
Sbjct: 1 MASSSRLPKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPRYLNQLARMMAFKIPGSN 60
Query: 61 IQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKCIITEKDMFDNWVKSHLAVKG 120
+ S TID +IK LK+ F AI EM G + SGFGWNDE KCI+ EK++FDNWVKSHLA KG
Sbjct: 61 VHAS-TIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKG 120
Query: 121 LLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQG 180
LL KLF +Y++LSYVFGKD AT AE+F +VGSN GYE F + + MYSQ
Sbjct: 121 LLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTNFQPMYSQE 180
Query: 181 LNMSPNDIMGPRPSRSSE-------------------------EVISQLQGIPELSSRDR 240
LNMSP+++MG R +R SE EV+ QL+ IPEL+ DR
Sbjct: 181 LNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADNASQTRQEVVRQLEAIPELTFMDR 240
Query: 241 VRLMRILMRNVNDMKAFLLVPDELKLDYCTVILEEN 251
LM ILMRNVNDMKAFL VPD +K YC++IL+EN
Sbjct: 241 CPLMPILMRNVNDMKAFLEVPDNMKYPYCSIILQEN 275
BLAST of PI0024894 vs. ExPASy TrEMBL
Match:
A0A5A7U216 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001370 PE=4 SV=1)
HSP 1 Score: 288.1 bits (736), Expect = 3.5e-74
Identity = 153/282 (54.26%), Postives = 191/282 (67.73%), Query Frame = 0
Query: 1 MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTN 60
M SSSR PKH WT+EE LVECL+ELV+AGGW+SD+GTFR GYL QL RMMA K+ G N
Sbjct: 1 MTSSSRLPKHTWTKEEEVGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60
Query: 61 IQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKCIITEKDMFDNWVKSHLAVKG 120
I S TID +IK +K+ F A+ EM G + SGFGWNDE KCII EK++FD+W SH A KG
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIIAEKEVFDDW--SHPAAKG 120
Query: 121 LLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQG 180
LLNK F +Y++LSYVFGKD AT RAE+FT++GSN P GY+ F D + + P MYS G
Sbjct: 121 LLNKSFVHYDELSYVFGKDPATGGRAESFTDIGSNDPAGYDAFAADAVPDTDFPPMYSPG 180
Query: 181 LNMSPNDIMGPRPSR-------------------------------SSEEVISQLQGIPE 240
LNMSP+D+M R +R + +E++ QL+ IPE
Sbjct: 181 LNMSPDDLMETRTARWDIVRTAVEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPE 240
Query: 241 LSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVILEEN 251
L+ DR RLMRI+MRNV+DMKAFL VPD + YC++IL+EN
Sbjct: 241 LTLMDRCRLMRIIMRNVDDMKAFLEVPDNMNYPYCSIILQEN 279
BLAST of PI0024894 vs. ExPASy TrEMBL
Match:
A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)
HSP 1 Score: 285.4 bits (729), Expect = 2.3e-73
Identity = 151/303 (49.83%), Postives = 197/303 (65.02%), Query Frame = 0
Query: 1 MASSSRAPKHLWTR-EESTLVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTN 60
MAS SRAPKH WT+ EE VECL+ELVS+GGW+SD+GTF+ GYLAQLQRMMAEKL GTN
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 IQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKCIITEKDMFDNWVKSHLAVKG 120
IQ S TID +K+LKK++ AI EM G S SGFGWN+E +CII E+D+FD+W+KSH A KG
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 LLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEE-FPTDDGNNVEIPMMYSQ 180
LL+K F YY+ LSYVFGKD AT AR+ETF NVGSNV + + P D ++ +IP MYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 GLNMSPNDIMGPRPSRSSE----------------------------------------- 240
G++MSP+++ G R ++SE
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240
Query: 241 ------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTV 249
+V+ QLQ IP+L S+DR +LM+IL R++ ++ FL +P ELKL+YC +
Sbjct: 241 KEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNI 300
BLAST of PI0024894 vs. ExPASy TrEMBL
Match:
A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)
HSP 1 Score: 285.4 bits (729), Expect = 2.3e-73
Identity = 151/303 (49.83%), Postives = 197/303 (65.02%), Query Frame = 0
Query: 1 MASSSRAPKHLWTR-EESTLVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTN 60
MAS SRAPKH WT+ EE VECL+ELVS+GGW+SD+GTF+ GYLAQLQRMMAEKL GTN
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 IQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKCIITEKDMFDNWVKSHLAVKG 120
IQ S TID +K+LKK++ AI EM G S SGFGWN+E +CII E+D+FD+W+KSH A KG
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 LLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEE-FPTDDGNNVEIPMMYSQ 180
LL+K F YY+ LSYVFGKD AT AR+ETF NVGSNV + + P D ++ +IP MYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 GLNMSPNDIMGPRPSRSSE----------------------------------------- 240
G++MSP+++ G R ++SE
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240
Query: 241 ------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTV 249
+V+ QLQ IP+L S+DR +LM+IL R++ ++ FL +P ELKL+YC +
Sbjct: 241 KEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNI 300
BLAST of PI0024894 vs. ExPASy TrEMBL
Match:
A0A5A7VC47 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00690 PE=4 SV=1)
HSP 1 Score: 282.3 bits (721), Expect = 1.9e-72
Identity = 155/304 (50.99%), Postives = 191/304 (62.83%), Query Frame = 0
Query: 1 MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTN 60
M SSSR PKH WT+EE LV CL+ELV+AGGW+SD+GTFR GYL QL RMMA K+ G N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVVCLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60
Query: 61 IQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKCIITEKDMFDNWVKSHLAVKG 120
I S TID +IK +K+ F A+ EM G +YSGF WNDE KCI+ EK++FD+W SH A KG
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNYSGFRWNDEKKCIVAEKEVFDDW--SHPAAKG 120
Query: 121 LLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQG 180
LLNKLF +Y++ SYVFGKDCAT RAE+F ++GSN P GY+ F D + + P MYS G
Sbjct: 121 LLNKLFVHYDEPSYVFGKDCATGGRAESFADIGSNDPPGYDAFAADVVPDTDFPPMYSPG 180
Query: 181 LNMSPNDIMGPRPSRSSE------------------------------------------ 240
LNMSP+D+M R +R SE
Sbjct: 181 LNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPI 240
Query: 241 -----------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVI 251
E++ QL+ IPEL+ DR RLMRILMRNV+DMKAFL VPD +K YC++I
Sbjct: 241 LQRQDATQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCSII 300
BLAST of PI0024894 vs. NCBI nr
Match:
KAA0054347.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 291.2 bits (744), Expect = 8.6e-75
Identity = 158/276 (57.25%), Postives = 190/276 (68.84%), Query Frame = 0
Query: 1 MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTN 60
MASSSR PKH WT+EE LVECL+ELV+AGGW+SD+GTFR YL QL RMMA K+ G+N
Sbjct: 1 MASSSRLPKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPRYLNQLARMMAFKIPGSN 60
Query: 61 IQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKCIITEKDMFDNWVKSHLAVKG 120
+ S TID +IK LK+ F AI EM G + SGFGWNDE KCI+ EK++FDNWVKSHLA KG
Sbjct: 61 VHAS-TIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKG 120
Query: 121 LLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQG 180
LL KLF +Y++LSYVFGKD AT AE+F +VGSN GYE F + + MYSQ
Sbjct: 121 LLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTNFQPMYSQE 180
Query: 181 LNMSPNDIMGPRPSRSSE-------------------------EVISQLQGIPELSSRDR 240
LNMSP+++MG R +R SE EV+ QL+ IPEL+ DR
Sbjct: 181 LNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADNASQTRQEVVRQLEAIPELTFMDR 240
Query: 241 VRLMRILMRNVNDMKAFLLVPDELKLDYCTVILEEN 251
LM ILMRNVNDMKAFL VPD +K YC++IL+EN
Sbjct: 241 CPLMPILMRNVNDMKAFLEVPDNMKYPYCSIILQEN 275
BLAST of PI0024894 vs. NCBI nr
Match:
KAA0047509.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 288.1 bits (736), Expect = 7.2e-74
Identity = 153/282 (54.26%), Postives = 191/282 (67.73%), Query Frame = 0
Query: 1 MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTN 60
M SSSR PKH WT+EE LVECL+ELV+AGGW+SD+GTFR GYL QL RMMA K+ G N
Sbjct: 1 MTSSSRLPKHTWTKEEEVGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60
Query: 61 IQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKCIITEKDMFDNWVKSHLAVKG 120
I S TID +IK +K+ F A+ EM G + SGFGWNDE KCII EK++FD+W SH A KG
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIIAEKEVFDDW--SHPAAKG 120
Query: 121 LLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQG 180
LLNK F +Y++LSYVFGKD AT RAE+FT++GSN P GY+ F D + + P MYS G
Sbjct: 121 LLNKSFVHYDELSYVFGKDPATGGRAESFTDIGSNDPAGYDAFAADAVPDTDFPPMYSPG 180
Query: 181 LNMSPNDIMGPRPSR-------------------------------SSEEVISQLQGIPE 240
LNMSP+D+M R +R + +E++ QL+ IPE
Sbjct: 181 LNMSPDDLMETRTARWDIVRTAVEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPE 240
Query: 241 LSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVILEEN 251
L+ DR RLMRI+MRNV+DMKAFL VPD + YC++IL+EN
Sbjct: 241 LTLMDRCRLMRIIMRNVDDMKAFLEVPDNMNYPYCSIILQEN 279
BLAST of PI0024894 vs. NCBI nr
Match:
XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 285.4 bits (729), Expect = 4.7e-73
Identity = 151/303 (49.83%), Postives = 197/303 (65.02%), Query Frame = 0
Query: 1 MASSSRAPKHLWTR-EESTLVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTN 60
MAS SRAPKH WT+ EE VECL+ELVS+GGW+SD+GTF+ GYLAQLQRMMAEKL GTN
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 IQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKCIITEKDMFDNWVKSHLAVKG 120
IQ S TID +K+LKK++ AI EM G S SGFGWN+E +CII E+D+FD+W+KSH A KG
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 LLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEE-FPTDDGNNVEIPMMYSQ 180
LL+K F YY+ LSYVFGKD AT AR+ETF NVGSNV + + P D ++ +IP MYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 GLNMSPNDIMGPRPSRSSE----------------------------------------- 240
G++MSP+++ G R ++SE
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240
Query: 241 ------------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTV 249
+V+ QLQ IP+L S+DR +LM+IL R++ ++ FL +P ELKL+YC +
Sbjct: 241 KEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNI 300
BLAST of PI0024894 vs. NCBI nr
Match:
KAA0065892.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 282.3 bits (721), Expect = 4.0e-72
Identity = 155/304 (50.99%), Postives = 191/304 (62.83%), Query Frame = 0
Query: 1 MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTN 60
M SSSR PKH WT+EE LV CL+ELV+AGGW+SD+GTFR GYL QL RMMA K+ G N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVVCLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60
Query: 61 IQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKCIITEKDMFDNWVKSHLAVKG 120
I S TID +IK +K+ F A+ EM G +YSGF WNDE KCI+ EK++FD+W SH A KG
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNYSGFRWNDEKKCIVAEKEVFDDW--SHPAAKG 120
Query: 121 LLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQG 180
LLNKLF +Y++ SYVFGKDCAT RAE+F ++GSN P GY+ F D + + P MYS G
Sbjct: 121 LLNKLFVHYDEPSYVFGKDCATGGRAESFADIGSNDPPGYDAFAADVVPDTDFPPMYSPG 180
Query: 181 LNMSPNDIMGPRPSRSSE------------------------------------------ 240
LNMSP+D+M R +R SE
Sbjct: 181 LNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPI 240
Query: 241 -----------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVI 251
E++ QL+ IPEL+ DR RLMRILMRNV+DMKAFL VPD +K YC++I
Sbjct: 241 LQRQDATQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCSII 300
BLAST of PI0024894 vs. NCBI nr
Match:
KAA0044843.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 282.3 bits (721), Expect = 4.0e-72
Identity = 155/304 (50.99%), Postives = 191/304 (62.83%), Query Frame = 0
Query: 1 MASSSRAPKHLWTREEST-LVECLMELVSAGGWKSDSGTFRLGYLAQLQRMMAEKLLGTN 60
M SSSR PKH WT+EE LVECL+ELV+AGGW+SD+GTFR GYL QL RMMA K+ G N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60
Query: 61 IQGSPTIDYQIKTLKKSFQAITEMCGSSYSGFGWNDEIKCIITEKDMFDNWVKSHLAVKG 120
S TID +IK +K+ F A+ EMCG + SGFGWNDE KCII EK++FD+W SH A KG
Sbjct: 61 NHAS-TIDSRIKLMKRMFHALAEMCGPNCSGFGWNDEKKCIIAEKEVFDDW--SHPAAKG 120
Query: 121 LLNKLFSYYNKLSYVFGKDCATVARAETFTNVGSNVPKGYEEFPTDDGNNVEIPMMYSQG 180
LLNK F +Y++LSYVFGKD AT RAE+F ++GSN P GY+ F D + + P MYS G
Sbjct: 121 LLNKSFVHYDELSYVFGKDRATGDRAESFADIGSNDPAGYDAFAADIVPDTDFPPMYSPG 180
Query: 181 LNMSPNDIMGPRPSRSSE------------------------------------------ 240
LNMSP+D+M R +R SE
Sbjct: 181 LNMSPDDLMETRTARVSERRNVSSGSKRKRPGHAIDSGDIVRTAIEYGNEQLHRIAEWSI 240
Query: 241 -----------EVISQLQGIPELSSRDRVRLMRILMRNVNDMKAFLLVPDELKLDYCTVI 251
E++ QL+ IPEL+ DR RLMRI+MRNV+DMKAFL VPD +K YC++I
Sbjct: 241 LQCQDATQTRQEIVRQLEAIPELTLMDRCRLMRIIMRNVDDMKAFLEVPDNMKYPYCSII 300
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UIE9 | 4.1e-75 | 57.25 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7U216 | 3.5e-74 | 54.26 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7U0H7 | 2.3e-73 | 49.83 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A1S3B4L3 | 2.3e-73 | 49.83 | uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... | [more] |
| A0A5A7VC47 | 1.9e-72 | 50.99 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0054347.1 | 8.6e-75 | 57.25 | retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon p... | [more] |
| KAA0047509.1 | 7.2e-74 | 54.26 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| XP_008441954.1 | 4.7e-73 | 49.83 | PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... | [more] |
| KAA0065892.1 | 4.0e-72 | 50.99 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0044843.1 | 4.0e-72 | 50.99 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
