PI0024872 (gene) Melon (PI 482460) v1

Overview


Name	PI0024872
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr04: 17264859 .. 17266222 (+)
RNA-Seq Expression	PI0024872
Synteny	PI0024872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAACACTGACATACCGGACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGCGGTGAGGAAATTCACTACATAGAGACGTCCAGCGCATGGAGTCAATGGAGGGATGAGCTTGCGGAAAGAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAACGCCCAATTAATTCTACTACTACCCGTGTATTACGTATTATGTATTGTGTATTGCGTGTCCTGTGTATTGTGTTTTGCGTATTCTGTGTAGTTCAGTACGATGACAATATAATGTATGTGTTAACATTTCGATTGTTGATGTAAATTAGTAATTCGCACCTCACTTAGTTTGTGACATTAATTTATTGTTATTTTTTTCCTAGTATGACAACGTCTTCAAGGGCCCCCAAGCACCACTGGACGAAAGAAGAGGATTCCGTCCTCGTTGAATGTCTAGTAGAGTTAGTATCTTCCGACGGATGGAGGTCGAATAATGGGACTTTTAGACCCGGATACCATAGTCATCTACAGAGAATGATTGTCGAGAGGATGCCCGAACATAACATAATGGCTACGACAATAGATTGTCGGATCAAGACAATGAAAAGAGCATTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCAGTTGGAATGATGAGCCGAAATACATCATTGCCGAGAAAGACTTGTTCGACAGGTGGGTGAAGGTATGTTCTTTATTCTGTCCATTACTGTTCGTTTCTAATTATAAATTGTCTAATTTGTTACCACAACAACACTTGTACAGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCACTACGACGACCTCTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGGCGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGATTTGCCCACTACGACGGGAACGATATGGAGAACCCGACGATGTGCAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTAGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGCTGAAATTATTCGTAGTGCCATGGAATATGCCAATGACCAACTTAAGGCCATTGTAGAATGGCCCAAGGAACAACGGCAAGATGCAAGTGTGACACGTGCGGAAGTCGTTAGACAGCTACAGGGAATCCCGGAGCTGAGTCGACTAGATAGGGCTCGTTGTATGCGCATATTGATGTGCAGCGTGGACGACATGAAAGCATTTTTAGACATCTCGGACGAGGTTAAGTTGGATTACTGCACGGTCATACTCCAAGATGACGCTTGA

mRNA sequence

ATGACGAACACTGACATACCGGACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGCGGTGAGGAAATTCACTACATAGAGACGTCCAGCGCATGGAGTCAATGGAGGGATGAGCTTGCGGAAAGAATGTTCAGTGATTGGGAGTTGCGTAATCATATGACAACGTCTTCAAGGGCCCCCAAGCACCACTGGACGAAAGAAGAGGATTCCGTCCTCGTTGAATGTCTAGTAGAGTTAGTATCTTCCGACGGATGGAGGTCGAATAATGGGACTTTTAGACCCGGATACCATAGTCATCTACAGAGAATGATTGTCGAGAGGATGCCCGAACATAACATAATGGCTACGACAATAGATTGTCGGATCAAGACAATGAAAAGAGCATTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCAGTTGGAATGATGAGCCGAAATACATCATTGCCGAGAAAGACTTGTTCGACAGGTGGGTGAAGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCACTACGACGACCTCTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGGCGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGATTTGCCCACTACGACGGGAACGATATGGAGAACCCGACGATGTGCAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTAGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGCTGAAATTATTCGTAGTGCCATGGAATATGCCAATGACCAACTTAAGGCCATTGTAGAATGGCCCAAGGAACAACGGCAAGATGCAAGTGTGACACGTGCGGAAGTCGTTAGACAGCTACAGGGAATCCCGGAGCTGAGTCGACTAGATAGGGCTCGTTGTATGCGCATATTGATGTGCAGCGTGGACGACATGAAAGCATTTTTAGACATCTCGGACGAGGTTAAGTTGGATTACTGCACGGTCATACTCCAAGATGACGCTTGA

Coding sequence (CDS)

ATGACGAACACTGACATACCGGACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGCGGTGAGGAAATTCACTACATAGAGACGTCCAGCGCATGGAGTCAATGGAGGGATGAGCTTGCGGAAAGAATGTTCAGTGATTGGGAGTTGCGTAATCATATGACAACGTCTTCAAGGGCCCCCAAGCACCACTGGACGAAAGAAGAGGATTCCGTCCTCGTTGAATGTCTAGTAGAGTTAGTATCTTCCGACGGATGGAGGTCGAATAATGGGACTTTTAGACCCGGATACCATAGTCATCTACAGAGAATGATTGTCGAGAGGATGCCCGAACATAACATAATGGCTACGACAATAGATTGTCGGATCAAGACAATGAAAAGAGCATTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCAGTTGGAATGATGAGCCGAAATACATCATTGCCGAGAAAGACTTGTTCGACAGGTGGGTGAAGAGTCATCCAGCCGCAAAGGGCCTCCTAAACAAACCCTTTCCCCACTACGACGACCTCTGCTACGTGTTCGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGGCGATGTTGGGTCGAACGTGCCTCCAGGCTTCGAAGGATTTGCCCACTACGACGGGAACGATATGGAGAACCCGACGATGTGCAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTAGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGCTGAAATTATTCGTAGTGCCATGGAATATGCCAATGACCAACTTAAGGCCATTGTAGAATGGCCCAAGGAACAACGGCAAGATGCAAGTGTGACACGTGCGGAAGTCGTTAGACAGCTACAGGGAATCCCGGAGCTGAGTCGACTAGATAGGGCTCGTTGTATGCGCATATTGATGTGCAGCGTGGACGACATGAAAGCATTTTTAGACATCTCGGACGAGGTTAAGTTGGATTACTGCACGGTCATACTCCAAGATGACGCTTGA

Protein sequence

MTNTDIPDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNHMTTSSRAPKHHWTKEEDSVLVECLVELVSSDGWRSNNGTFRPGYHSHLQRMIVERMPEHNIMATTIDCRIKTMKRAFQAISEMRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMCSQGLDMSPDDIMTPRSVRMSEARPSSSGSKRKRGGQALEAAEIIRSAMEYANDQLKAIVEWPKEQRQDASVTRAEVVRQLQGIPELSRLDRARCMRILMCSVDDMKAFLDISDEVKLDYCTVILQDDA

Homology

[Close]

BLAST of PI0024872 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 1.1e-118
Identity = 218/357 (61.06%), Postives = 271/357 (75.91%), Query Frame = 0


Query: 1   MTNTDIPDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNHMTTSSR 60
           MTN DI D +DE DST+ATT  ++IHYIETS+ WSQWRD LAE +         MT+SSR
Sbjct: 311 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEI---------MTSSSR 370

Query: 61  APKHHWTKEEDSVLVECLVELVSSDGWRSNNGTFRPGYHSHLQRMIVERMPEHNIMATTI 120
            PKH WTKEE++ LVECLVELV++ GWRS+NGTFRPGY + L RM+  ++P  NI A+TI
Sbjct: 371 LPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTI 430

Query: 121 DCRIKTMKRAFQAISEMRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGLLNKPFP 180
           D RIK MKR F A++EMRGP CSGF WNDE K I+AEK++FD W  SHPAAKGLLNK F 
Sbjct: 431 DSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFV 490

Query: 181 HYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMCSQGLDMSPDD 240
           HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL+MSPDD
Sbjct: 491 HYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDD 550

Query: 241 IMTPRSVRMSEARPSSSGSKRKRGGQALEAAEIIRSAMEYANDQLKAIVEWPKEQRQDAS 300
           +M  R+ R+SE R  SSGSKRKR G A ++ +I+R+A+EY N+QL  I EWP  QRQDA+
Sbjct: 551 LMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDAT 610

Query: 301 VTRAEVVRQLQGIPELSRLDRARCMRILMCSVDDMKAFLDISDEVKLDYCTVILQDD 358
            TR E+VR L+ IPEL+ +DR R MRILM +VDDMKAFL++ D +K  YC++ILQ++
Sbjct: 611 QTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLILQEN 656

[Close]

BLAST of PI0024872 vs. ExPASy TrEMBL
Match: A0A5A7T091 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00160 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 1.6e-104
Identity = 201/359 (55.99%), Postives = 256/359 (71.31%), Query Frame = 0


Query: 1   MTNTDIPDEVDEGDSTYA-TTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNHMTTSS 60
           MT  D  ++ DEGDSTYA TT  E+I YIET++ WSQWRD LA  MF+DW    HM+TS+
Sbjct: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDW----HMSTSN 60

Query: 61  RAPKHHWTKEEDSVLVECLVELVSSDGWRSNNGTFRPGYHSHLQRMIVERMPEHNIMATT 120
           RAP+H WT+EE+  LVECL+ELVS  GW+S+NGTFRPGY + L RM+ E++P   + ATT
Sbjct: 61  RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 120

Query: 121 -IDCRIKTMKRAFQAISEMRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGLLNKP 180
            IDCRIKT+KR FQAI+EMRGP CSGF WNDE K I+AEK+LFD WV+SHPAAKGLLNKP
Sbjct: 121 VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 180

Query: 181 FPHYDDLCYVFGRDRATGGRAETFGDVGSNVP-PGFEGFAHYDGNDMENPTMCSQGLDMS 240
           FP+YD+L YVF RDRATG  AETF DVGSN P  G++ F   DGN+ + P + SQG+D+S
Sbjct: 181 FPYYDELTYVFCRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSQGVDIS 240

Query: 241 PDDIMTPRSVRMSEARPSSSGSKRKRGGQALEAAEIIRSAMEYANDQLKAIVEWPKEQRQ 300
            DD+   R  R SE R  SSGSKRKRG Q     E I  A++  N+QL+ I EWP     
Sbjct: 241 QDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLA 300

Query: 301 DASVTRAEVVRQLQGIPELSRLDRARCMRILMCSVDDMKAFLDISDEVKLDYCTVILQD 357
           + +  R E  R L+ +PEL+ LDRA   R L+  +DD++ F+ + ++ +  +C V+L+D
Sbjct: 301 NDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRD 354

[Close]

BLAST of PI0024872 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 6.7e-103
Identity = 188/303 (62.05%), Postives = 235/303 (77.56%), Query Frame = 0


Query: 55  MTTSSRAPKHHWTKEEDSVLVECLVELVSSDGWRSNNGTFRPGYHSHLQRMIVERMPEHN 114
           MT+SSR PKH WTKEE++ LVECLVELV++ GWRS+NGTFRPGY + L RM+  ++P  N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 115 IMATTIDCRIKTMKRAFQAISEMRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGL 174
           I A+TID RIK MKR F A++EMRGP CSGF WNDE K I+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 175 LNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMCSQGL 234
           LNK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180

Query: 235 DMSPDDIMTPRSVRMSEARPSSSGSKRKRGGQALEAAEIIRSAMEYANDQLKAIVEWPKE 294
           +MSPDD+M  R+ R+SE R  SSGSKRKR G A ++ +I+R+A+EY N+QL  I EWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 295 QRQDASVTRAEVVRQLQGIPELSRLDRARCMRILMCSVDDMKAFLDISDEVKLDYCTVIL 354
           QRQDA+ TR E+VR L+ IPEL+ +DR R MRILM +VDDMKAFL++ D +K  YC++IL
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300

Query: 355 QDD 358
           Q++
Sbjct: 301 QEN 301

[Close]

BLAST of PI0024872 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 1.1e-102
Identity = 188/303 (62.05%), Postives = 235/303 (77.56%), Query Frame = 0


Query: 55  MTTSSRAPKHHWTKEEDSVLVECLVELVSSDGWRSNNGTFRPGYHSHLQRMIVERMPEHN 114
           MT+SSR PKH WTKEE++ LVECLVELV++ GWRS+NGTFRPGY + L RM+  ++P  N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 115 IMATTIDCRIKTMKRAFQAISEMRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGL 174
           I A+TID RIK MKR F A++EMRGP CSGF WNDE K I+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 175 LNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMCSQGL 234
           LNK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTDFPPMYSPGL 180

Query: 235 DMSPDDIMTPRSVRMSEARPSSSGSKRKRGGQALEAAEIIRSAMEYANDQLKAIVEWPKE 294
           +MSPDD+M  R+ R+SE R  SSGSKRKR G A ++ +I+R+A+EY N+QL  I EWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 295 QRQDASVTRAEVVRQLQGIPELSRLDRARCMRILMCSVDDMKAFLDISDEVKLDYCTVIL 354
           QRQDA+ TR E+VR L+ IPEL+ +DR R MRILM +VDDMKAFL++ D +K  YC++IL
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300

Query: 355 QDD 358
           Q++
Sbjct: 301 QEN 301

[Close]

BLAST of PI0024872 vs. ExPASy TrEMBL
Match: A0A5D3CBF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00350 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 1.1e-102
Identity = 188/303 (62.05%), Postives = 235/303 (77.56%), Query Frame = 0


Query: 55  MTTSSRAPKHHWTKEEDSVLVECLVELVSSDGWRSNNGTFRPGYHSHLQRMIVERMPEHN 114
           MT+SSR PKH WTKEE++ LVECLVELV++ GWRS+NGTFRPGY + L RM+  ++P  N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 115 IMATTIDCRIKTMKRAFQAISEMRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGL 174
           I A+TID RIK MKR F A++EMRGP CSGF WNDE K I+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 175 LNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMCSQGL 234
           LNK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 235 DMSPDDIMTPRSVRMSEARPSSSGSKRKRGGQALEAAEIIRSAMEYANDQLKAIVEWPKE 294
           +MSPDD+M  R+ R+SE R  SSGSKRKR G A ++ +I+R+A+EY N+QL  I EWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 295 QRQDASVTRAEVVRQLQGIPELSRLDRARCMRILMCSVDDMKAFLDISDEVKLDYCTVIL 354
           QRQDA+ TR E+VR L+ IPEL+ +DR R MRILM +VDDMKAFL++ D +K  YC++IL
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300

Query: 355 QDD 358
           Q++
Sbjct: 301 QEN 301

[Close]

BLAST of PI0024872 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 436.4 bits (1121), Expect = 2.3e-118
Identity = 218/357 (61.06%), Postives = 271/357 (75.91%), Query Frame = 0


Query: 1   MTNTDIPDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNHMTTSSR 60
           MTN DI D +DE DST+ATT  ++IHYIETS+ WSQWRD LAE +         MT+SSR
Sbjct: 311 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEI---------MTSSSR 370

Query: 61  APKHHWTKEEDSVLVECLVELVSSDGWRSNNGTFRPGYHSHLQRMIVERMPEHNIMATTI 120
            PKH WTKEE++ LVECLVELV++ GWRS+NGTFRPGY + L RM+  ++P  NI A+TI
Sbjct: 371 LPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTI 430

Query: 121 DCRIKTMKRAFQAISEMRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGLLNKPFP 180
           D RIK MKR F A++EMRGP CSGF WNDE K I+AEK++FD W  SHPAAKGLLNK F 
Sbjct: 431 DSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFV 490

Query: 181 HYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMCSQGLDMSPDD 240
           HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL+MSPDD
Sbjct: 491 HYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDD 550

Query: 241 IMTPRSVRMSEARPSSSGSKRKRGGQALEAAEIIRSAMEYANDQLKAIVEWPKEQRQDAS 300
           +M  R+ R+SE R  SSGSKRKR G A ++ +I+R+A+EY N+QL  I EWP  QRQDA+
Sbjct: 551 LMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDAT 610

Query: 301 VTRAEVVRQLQGIPELSRLDRARCMRILMCSVDDMKAFLDISDEVKLDYCTVILQDD 358
            TR E+VR L+ IPEL+ +DR R MRILM +VDDMKAFL++ D +K  YC++ILQ++
Sbjct: 611 QTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLILQEN 656

[Close]

BLAST of PI0024872 vs. NCBI nr
Match: KAA0036924.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 389.4 bits (999), Expect = 3.3e-104
Identity = 201/359 (55.99%), Postives = 256/359 (71.31%), Query Frame = 0


Query: 1   MTNTDIPDEVDEGDSTYA-TTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNHMTTSS 60
           MT  D  ++ DEGDSTYA TT  E+I YIET++ WSQWRD LA  MF+DW    HM+TS+
Sbjct: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDW----HMSTSN 60

Query: 61  RAPKHHWTKEEDSVLVECLVELVSSDGWRSNNGTFRPGYHSHLQRMIVERMPEHNIMATT 120
           RAP+H WT+EE+  LVECL+ELVS  GW+S+NGTFRPGY + L RM+ E++P   + ATT
Sbjct: 61  RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 120

Query: 121 -IDCRIKTMKRAFQAISEMRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGLLNKP 180
            IDCRIKT+KR FQAI+EMRGP CSGF WNDE K I+AEK+LFD WV+SHPAAKGLLNKP
Sbjct: 121 VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 180

Query: 181 FPHYDDLCYVFGRDRATGGRAETFGDVGSNVP-PGFEGFAHYDGNDMENPTMCSQGLDMS 240
           FP+YD+L YVF RDRATG  AETF DVGSN P  G++ F   DGN+ + P + SQG+D+S
Sbjct: 181 FPYYDELTYVFCRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSQGVDIS 240

Query: 241 PDDIMTPRSVRMSEARPSSSGSKRKRGGQALEAAEIIRSAMEYANDQLKAIVEWPKEQRQ 300
            DD+   R  R SE R  SSGSKRKRG Q     E I  A++  N+QL+ I EWP     
Sbjct: 241 QDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLA 300

Query: 301 DASVTRAEVVRQLQGIPELSRLDRARCMRILMCSVDDMKAFLDISDEVKLDYCTVILQD 357
           + +  R E  R L+ +PEL+ LDRA   R L+  +DD++ F+ + ++ +  +C V+L+D
Sbjct: 301 NDNHMRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRD 354

[Close]

BLAST of PI0024872 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 384.0 bits (985), Expect = 1.4e-102
Identity = 188/303 (62.05%), Postives = 235/303 (77.56%), Query Frame = 0


Query: 55  MTTSSRAPKHHWTKEEDSVLVECLVELVSSDGWRSNNGTFRPGYHSHLQRMIVERMPEHN 114
           MT+SSR PKH WTKEE++ LVECLVELV++ GWRS+NGTFRPGY + L RM+  ++P  N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 115 IMATTIDCRIKTMKRAFQAISEMRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGL 174
           I A+TID RIK MKR F A++EMRGP CSGF WNDE K I+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 175 LNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMCSQGL 234
           LNK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAMPDTDFPPMYSPGL 180

Query: 235 DMSPDDIMTPRSVRMSEARPSSSGSKRKRGGQALEAAEIIRSAMEYANDQLKAIVEWPKE 294
           +MSPDD+M  R+ R+SE R  SSGSKRKR G A ++ +I+R+A+EY N+QL  I EWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 295 QRQDASVTRAEVVRQLQGIPELSRLDRARCMRILMCSVDDMKAFLDISDEVKLDYCTVIL 354
           QRQDA+ TR E+VR L+ IPEL+ +DR R MRILM +VDDMKAFL++ D +K  YC++IL
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300

Query: 355 QDD 358
           Q++
Sbjct: 301 QEN 301

[Close]

BLAST of PI0024872 vs. NCBI nr
Match: KAA0038122.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0055248.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97185.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK00369.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 383.3 bits (983), Expect = 2.4e-102
Identity = 188/303 (62.05%), Postives = 235/303 (77.56%), Query Frame = 0


Query: 55  MTTSSRAPKHHWTKEEDSVLVECLVELVSSDGWRSNNGTFRPGYHSHLQRMIVERMPEHN 114
           MT+SSR PKH WTKEE++ LVECLVELV++ GWRS+NGTFRPGY + L RM+  ++P  N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 115 IMATTIDCRIKTMKRAFQAISEMRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGL 174
           I A+TID RIK MKR F A++EMRGP CSGF WNDE K I+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 175 LNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMCSQGL 234
           LNK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGL 180

Query: 235 DMSPDDIMTPRSVRMSEARPSSSGSKRKRGGQALEAAEIIRSAMEYANDQLKAIVEWPKE 294
           +MSPDD+M  R+ R+SE R  SSGSKRKR G A ++ +I+R+A+EY N+QL  I EWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 295 QRQDASVTRAEVVRQLQGIPELSRLDRARCMRILMCSVDDMKAFLDISDEVKLDYCTVIL 354
           QRQDA+ TR E+VR L+ IPEL+ +DR R MRILM +VDDMKAFL++ D +K  YC++IL
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300

Query: 355 QDD 358
           Q++
Sbjct: 301 QEN 301

[Close]

BLAST of PI0024872 vs. NCBI nr
Match: KAA0057083.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 383.3 bits (983), Expect = 2.4e-102
Identity = 188/303 (62.05%), Postives = 235/303 (77.56%), Query Frame = 0


Query: 55  MTTSSRAPKHHWTKEEDSVLVECLVELVSSDGWRSNNGTFRPGYHSHLQRMIVERMPEHN 114
           MT+SSR PKH WTKEE++ LVECLVELV++ GWRS+NGTFRPGY + L RM+  ++P  N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 115 IMATTIDCRIKTMKRAFQAISEMRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGL 174
           I A+TID RIK MKR F A++EMRGP CSGF WNDE K I+AEK++FD W  SHPAAKGL
Sbjct: 61  IHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGL 120

Query: 175 LNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPPGFEGFAHYDGNDMENPTMCSQGL 234
           LNK F HYD+L YVFG+DRATGGRAE+F D+GSN PPG++  A     D + P M S GL
Sbjct: 121 LNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAMPDTDFPPMYSPGL 180

Query: 235 DMSPDDIMTPRSVRMSEARPSSSGSKRKRGGQALEAAEIIRSAMEYANDQLKAIVEWPKE 294
           +MSPDD+M  R+ R+SE R  SSGSKRKR G A ++ +I+R+A+EY N+QL  I EWP  
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240

Query: 295 QRQDASVTRAEVVRQLQGIPELSRLDRARCMRILMCSVDDMKAFLDISDEVKLDYCTVIL 354
           QRQDA+ TR E+VR L+ IPEL+ +DR R MRILM +VDDMKAFL++ D +K  YC++IL
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300

Query: 355 QDD 358
           Q++
Sbjct: 301 QEN 301

[Close]

BLAST of PI0024872 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-10
Identity = 34/131 (25.95%), Postives = 66/131 (50.38%), Query Frame = 0


Query: 66  WTKEEDSVLVECLVELVSSDGWRSNNGTFRPGYHSHLQRMIVERMPEHNIMATTIDCRIK 125
           WT   D  L++ LVE V ++G R         ++  +     +   +HN     +  R K
Sbjct: 327 WTPPMDYHLIDLLVEQV-NNGNRVGQTFITSAWNEMVTAFNAKFGSQHN--KDVLKNRYK 386

Query: 126 TMKRAFQAISEMRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGLLNKPFPHYDDL 185
            ++R +  I  +     +GFSW+     +IA+ D+++ ++++HP A+    K  P Y +L
Sbjct: 387 HLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNL 446

Query: 186 CYVFGRDRATG 197
           C++FG++ + G
Sbjct: 447 CFIFGKETSDG 452

[Close]

BLAST of PI0024872 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-09
Identity = 39/150 (26.00%), Postives = 68/150 (45.33%), Query Frame = 0


Query: 60  RAPKHHWTKEEDSVLVECLVELVSSDGWRSNNG-----TFRPGYHSHLQRMIVERMPEHN 119
           + P + WT +E  VL+E +        WR ++G     T        L + +       N
Sbjct: 11  KGPYNQWTPDETDVLIELI-----RQNWRDSSGIIGKLTVESKLLPALNKRLGCNKNHKN 70

Query: 120 IMATTIDCRIKTMKRAFQAISEMRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGL 179
            M+     R+K +K  +Q+  +++    SGF W+ E K   A  +++  ++K+HP  K +
Sbjct: 71  YMS-----RLKFLKNLYQSYLDLK-RFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHM 130

Query: 180 LNKPFPHYDDLCYVFGRDRATGGRAETFGD 205
             +   H++DL  +FG   ATG  A    D
Sbjct: 131 QTESIDHFEDLQIIFGDVVATGSFAVGMSD 149

[Close]

BLAST of PI0024872 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 7.3e-09
Identity = 29/114 (25.44%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 79  VELVSSDGWRSN--NGTFRPGYHSHLQRMIVERMPEHNIMATTIDCRIKTMKRAFQAISE 138
           ++L+     R N   G FR    + +  +   +  E N     +  R K+++R F AI  
Sbjct: 195 IDLMLDQARRGNQIEGVFRKQAWTEMVNLFNAKF-ESNFDVDVLKNRYKSLRRQFNAIKS 254

Query: 139 MRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGLLNKPFPHYDDLCYVFG 191
           +      GF+W++E + + A+ +++  ++K+H  A+  + +P P+Y DLC + G
Sbjct: 255 IL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCG 305

[Close]

BLAST of PI0024872 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 59.3 bits (142), Expect = 7.3e-09
Identity = 29/114 (25.44%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 79  VELVSSDGWRSN--NGTFRPGYHSHLQRMIVERMPEHNIMATTIDCRIKTMKRAFQAISE 138
           ++L+     R N   G FR    + +  +   +  E N     +  R K+++R F AI  
Sbjct: 195 IDLMLDQARRGNQIEGVFRKQAWTEMVNLFNAKF-ESNFDVDVLKNRYKSLRRQFNAIKS 254

Query: 139 MRGPTCSGFSWNDEPKYIIAEKDLFDRWVKSHPAAKGLLNKPFPHYDDLCYVFG 191
           +      GF+W++E + + A+ +++  ++K+H  A+  + +P P+Y DLC + G
Sbjct: 255 IL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCG 305

[Close]

BLAST of PI0024872 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 1.1e-04
Identity = 17/53 (32.08%), Postives = 30/53 (56.60%), Query Frame = 0


Query: 144 GFSWNDEPKYIIAEKDLFDRWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATG 197
           GF W+   + +I +  L+  ++K+HP A+    KP  ++ DLC ++G   A G
Sbjct: 88  GFVWDQTHQTVIGDDSLWSLYLKAHPEARVYKTKPVLNFSDLCLIYGYTVADG 140

The following BLAST results are available for this feature:

BLAST of PI0024872 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GCB5	1.1e-118	61.06	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5A7T091	1.6e-104	55.99	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DPR5	6.7e-103	62.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UME4	1.1e-102	62.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CBF7	1.1e-102	62.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0024872 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34114.1	2.3e-118	61.06	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0036924.1	3.3e-104	55.99	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035621.1	1.4e-102	62.05	retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon...	[more]
KAA0038122.1	2.4e-102	62.05	retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon...	[more]
KAA0057083.1	2.4e-102	62.05	retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon p...	[more]

BLAST of PI0024872 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24960.2	2.3e-10	25.95	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G30140.1	1.5e-09	26.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.1	7.3e-09	25.44	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	7.3e-09	25.44	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.1	1.1e-04	32.08	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 65..161 e-value: 3.1E-8 score: 34.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 57..356

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024872.1	PI0024872.1	mRNA