PI0024826 (gene) Melon (PI 482460) v1

Overview
NamePI0024826
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Descriptionglycine-rich cell wall structural protein-like
Locationchr07: 22826436 .. 22827019 (+)
RNA-Seq ExpressionPI0024826
SyntenyPI0024826
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGGGAGTCATGTGATTACTCATGAAATGGGCAATGGACTTCCAGACTACTCAAACTTTAAAAAGGAAGTTCACCTTTTAGAGCTCACGGTTGGAGGTTATGGGGAAGTACCAGCAGGTGGTGGTGTTGGGACTAAGGGAGGCTTTGGCTCAGGTTCTGGGTCTGGTGGGATTGGAAGTGGTGGATTTGGCCGGGCATTGGTTATGGATCGGATGGTGGCTTTGGACCTGGAATTGGGTATGGCTCAGGTTCAGGCATTGGTGGTGCGGGTGGCGGATTCGGCGGTTCAGTTGGCATTGGAGGTGGTGGTGGAGTAAGTGGGTCAGCTGGTATTGTGGGCAGCAGTGGTGGTGGACTAGGCAGTTCAGGTGGCATCGTGGGTGGCATTGGCGGTGGAGTAGGTGGGCCAGGTGGTATCGTGGGCAGTGGCGGCGGCAGACTAGGCAATTCGGGTGGTATTGTGGGTGGCAGTGGCGGTGGAGTAAGTGGTTCGGGAGGCATGGGTGGTGGGTATAGTGGTCCGGGAGGCATGGGTGATGGTGTTGGTGGTGGTTATGGAGGCAACATGAGTAGTCCTTAA

mRNA sequence

ATGCTTGGGAGTCATGTGATTACTCATGAAATGGGCAATGGACTTCCAGACTACTCAAACTTTAAAAAGGAAGTTCACCTTTTAGAGCTCACGGTTGGAGGTTATGGGGAAGTACCAGCAGGTGGTGGTGTTGGGACTAAGGGAGGCTTTGGCTCAGGTTCTGGGTCTGGTGGGATTGGAAGTTCAGGCATTGGTGGTGCGGGTGGCGGATTCGGCGGTTCAGTTGGCATTGGAGGTGGTGGTGGAGTAAGTGGGTCAGCTGGTATTGTGGGCAGCAGTGGTGGTGGACTAGGCAGTTCAGGTGGCATCGTGGGTGGCATTGGCGGTGGAGTAGGTGGGCCAGGTGGTATCGTGGGCAGTGGCGGCGGCAGACTAGGCAATTCGGGTGGTATTGTGGGTGGCAGTGGCGGTGGAGTAAGTGGTTCGGGAGGCATGGGTGGTGGGTATAGTGGTCCGGGAGGCATGGGTGATGGTGTTGGTGGTGGTTATGGAGGCAACATGAGTAGTCCTTAA

Coding sequence (CDS)

ATGCTTGGGAGTCATGTGATTACTCATGAAATGGGCAATGGACTTCCAGACTACTCAAACTTTAAAAAGGAAGTTCACCTTTTAGAGCTCACGGTTGGAGGTTATGGGGAAGTACCAGCAGGTGGTGGTGTTGGGACTAAGGGAGGCTTTGGCTCAGGTTCTGGGTCTGGTGGGATTGGAAGTTCAGGCATTGGTGGTGCGGGTGGCGGATTCGGCGGTTCAGTTGGCATTGGAGGTGGTGGTGGAGTAAGTGGGTCAGCTGGTATTGTGGGCAGCAGTGGTGGTGGACTAGGCAGTTCAGGTGGCATCGTGGGTGGCATTGGCGGTGGAGTAGGTGGGCCAGGTGGTATCGTGGGCAGTGGCGGCGGCAGACTAGGCAATTCGGGTGGTATTGTGGGTGGCAGTGGCGGTGGAGTAAGTGGTTCGGGAGGCATGGGTGGTGGGTATAGTGGTCCGGGAGGCATGGGTGATGGTGTTGGTGGTGGTTATGGAGGCAACATGAGTAGTCCTTAA

Protein sequence

MLGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGGGVGTKGGFGSGSGSGGIGSSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGSSGGGLGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGMGGGYSGPGGMGDGVGGGYGGNMSSP
Homology
BLAST of PI0024826 vs. ExPASy Swiss-Prot
Match: P09789 (Glycine-rich cell wall structural protein 1 OS=Petunia hybrida OX=4102 GN=GRP-1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.9e-04
Identity = 75/140 (53.57%), Postives = 84/140 (60.00%), Query Frame = 0

Query: 33  GGYGEVPAGGGVGTKGGFGSGSGSGGIGS-SGIGGAGGGFGGSVGIGGGGGVSGSAGIVG 92
           GG     AGGG+G  GG G G G+GG G   G GGAGGGFGG  G G GGG+ G  G+ G
Sbjct: 72  GGGAGGGAGGGLGGGGGLGGGGGAGGGGGLGGGGGAGGGFGGGAGGGAGGGLGGGGGLGG 131

Query: 93  SSGGGLGSSGGIVGGIGGGVG-GPGGIVGSG---GGRLGNSGGIVGGSGGGVSGSGGMGG 152
             GGG G  GG+ GG G G G G GG VG G   GG +G  GG  GG GGGV G  G GG
Sbjct: 132 GGGGGAGGGGGVGGGAGSGGGFGAGGGVGGGAGAGGGVGGGGGFGGGGGGGVGGGSGHGG 191

Query: 153 GYSGPGGMGDGVGGGYGGNM 168
           G+   GG+G G GGG GG +
Sbjct: 192 GFGAGGGVGGGAGGGLGGGV 211

BLAST of PI0024826 vs. ExPASy TrEMBL
Match: A0A5A7VB20 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002870 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 146/204 (71.57%), Postives = 147/204 (72.06%), Query Frame = 0

Query: 1   MLGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGGGVGTKGGFGSGSGSGGIG 60
           MLGS VITHEM N LPDYSNFK EVHLLEL VGGYG V AGGGVGTKG FGS SGSGG G
Sbjct: 29  MLGSDVITHEMVNKLPDYSNFKNEVHLLELMVGGYGGVSAGGGVGTKGVFGSSSGSGGTG 88

Query: 61  ------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGSSGGG 120
                                    SGIGGAGGGFGGSVGIGGGGGVSGS GIVGS GGG
Sbjct: 89  GGGFGAGIGYGSDGGFGPGIGYGSGSGIGGAGGGFGGSVGIGGGGGVSGSGGIVGSGGGG 148

Query: 121 LGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGM----------G 171
           LG S    GGIGGGVGGPGGIVGSGGG LGNSGGIVG SGGGVSGSGGM          G
Sbjct: 149 LGGS----GGIGGGVGGPGGIVGSGGGGLGNSGGIVGDSGGGVSGSGGMGGGYSGSGGSG 208

BLAST of PI0024826 vs. ExPASy TrEMBL
Match: A0A1S4DZX5 (glycine-rich cell wall structural protein-like OS=Cucumis melo OX=3656 GN=LOC107991221 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 146/204 (71.57%), Postives = 147/204 (72.06%), Query Frame = 0

Query: 1   MLGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGGGVGTKGGFGSGSGSGGIG 60
           MLGS VITHEM N LPDYSNFK EVHLLEL VGGYG V AGGGVGTKG FGS SGSGG G
Sbjct: 29  MLGSDVITHEMVNKLPDYSNFKNEVHLLELMVGGYGGVSAGGGVGTKGVFGSSSGSGGTG 88

Query: 61  ------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGSSGGG 120
                                    SGIGGAGGGFGGSVGIGGGGGVSGS GIVGS GGG
Sbjct: 89  GGGFGAGIGYGSDGGFGPGIGYGSGSGIGGAGGGFGGSVGIGGGGGVSGSGGIVGSGGGG 148

Query: 121 LGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGM----------G 171
           LG S    GGIGGGVGGPGGIVGSGGG LGNSGGIVG SGGGVSGSGGM          G
Sbjct: 149 LGGS----GGIGGGVGGPGGIVGSGGGGLGNSGGIVGDSGGGVSGSGGMGGGYSGSGGSG 208

BLAST of PI0024826 vs. ExPASy TrEMBL
Match: A0A0A0L2J1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642350 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 5.9e-41
Identity = 144/205 (70.24%), Postives = 149/205 (72.68%), Query Frame = 0

Query: 1   MLGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGGGVGTKGG-FGSGSGSGGI 60
           MLGS VITHEMGNGLPDYSNFKKEVH LE T+GGYG V AGGGVGTKGG FGSGSGSGG 
Sbjct: 32  MLGSGVITHEMGNGLPDYSNFKKEVHRLEFTIGGYGGVSAGGGVGTKGGAFGSGSGSGGT 91

Query: 61  G------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGSSGG 120
           G                         SGIGG  GGFGGSVGIGGGGG+SGS GIVGS GG
Sbjct: 92  GGGGFGPGIGYGSDGGFGPGIGYGSGSGIGGVSGGFGGSVGIGGGGGISGSGGIVGSGGG 151

Query: 121 GLGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGV----------SGSGGM 171
            LG SGGIVGGIGGGV   GG+VG+GG  LGNSGGIVG SGGGV          SGSGG 
Sbjct: 152 VLGGSGGIVGGIGGGV---GGVVGNGGRGLGNSGGIVGDSGGGVRGSGGTGGGYSGSGGT 211

BLAST of PI0024826 vs. ExPASy TrEMBL
Match: A0A6J1FG14 (acanthoscurrin-2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443590 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.4e-19
Identity = 118/202 (58.42%), Postives = 127/202 (62.87%), Query Frame = 0

Query: 2   LGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGG--GVGTKGGFGS---GSGS 61
           L S +  HEMGNGLP+ +N KKEV+LLELTVGGYG V  GG  G+G  GGFGS   GSGS
Sbjct: 33  LASSMSAHEMGNGLPENTNVKKEVNLLELTVGGYGGVSPGGGSGIGMNGGFGSGYGGSGS 92

Query: 62  GGIG------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGS 121
           GG G                         SG GG GGG GGS GI GGGG+ GS GI GS
Sbjct: 93  GGAGGGGFGSGIGYGSDGGYGPGIGYGSDSGFGGGGGGLGGSGGI-GGGGIGGSGGIGGS 152

Query: 122 -SGGGLGSSGGI-VGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGMGGGYS 171
             GGGLG SGGI  GGIGG  G  GG+ G GGG LG SGGI  G GGGVSGSGG GGG  
Sbjct: 153 GGGGGLGGSGGIGGGGIGGSGGIGGGVGGGGGGGLGGSGGI--GGGGGVSGSGGGGGGVG 212

BLAST of PI0024826 vs. ExPASy TrEMBL
Match: A0A6J1F9U1 (acanthoscurrin-2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443590 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 117/201 (58.21%), Postives = 126/201 (62.69%), Query Frame = 0

Query: 2   LGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGG--GVGTKGGFGS---GSGS 61
           L S +  HEMGNGLP+ +N KKEV+LLELTVGGYG V  GG  G+G  GGFGS   GSGS
Sbjct: 33  LASSMSAHEMGNGLPENTNVKKEVNLLELTVGGYGGVSPGGGSGIGMNGGFGSGYGGSGS 92

Query: 62  GGIG------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGS 121
           GG G                         SG GG GGG GGS GI GGGG+ GS GI GS
Sbjct: 93  GGAGGGGFGSGIGYGSDGGYGPGIGYGSDSGFGGGGGGLGGSGGI-GGGGIGGSGGIGGS 152

Query: 122 -SGGGLGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGMGGGYSG 171
             GGGLG SGGI    GGG+GG GGI   GGG LG SGGI  G GGGVSGSGG GGG  G
Sbjct: 153 GGGGGLGGSGGIG---GGGIGGSGGI---GGGGLGGSGGI--GGGGGVSGSGGGGGGVGG 212

BLAST of PI0024826 vs. NCBI nr
Match: XP_016901290.1 (PREDICTED: glycine-rich cell wall structural protein-like [Cucumis melo] >KAA0064430.1 glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYK20158.1 glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 2.5e-41
Identity = 146/204 (71.57%), Postives = 147/204 (72.06%), Query Frame = 0

Query: 1   MLGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGGGVGTKGGFGSGSGSGGIG 60
           MLGS VITHEM N LPDYSNFK EVHLLEL VGGYG V AGGGVGTKG FGS SGSGG G
Sbjct: 29  MLGSDVITHEMVNKLPDYSNFKNEVHLLELMVGGYGGVSAGGGVGTKGVFGSSSGSGGTG 88

Query: 61  ------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGSSGGG 120
                                    SGIGGAGGGFGGSVGIGGGGGVSGS GIVGS GGG
Sbjct: 89  GGGFGAGIGYGSDGGFGPGIGYGSGSGIGGAGGGFGGSVGIGGGGGVSGSGGIVGSGGGG 148

Query: 121 LGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGM----------G 171
           LG S    GGIGGGVGGPGGIVGSGGG LGNSGGIVG SGGGVSGSGGM          G
Sbjct: 149 LGGS----GGIGGGVGGPGGIVGSGGGGLGNSGGIVGDSGGGVSGSGGMGGGYSGSGGSG 208

BLAST of PI0024826 vs. NCBI nr
Match: XP_011654145.2 (glycine-rich protein 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-39
Identity = 144/215 (66.98%), Postives = 149/215 (69.30%), Query Frame = 0

Query: 1   MLGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGGGVGTKGG-FGSGSGSGGI 60
           MLGS VITHEMGNGLPDYSNFKKEVH LE T+GGYG V AGGGVGTKGG FGSGSGSGG 
Sbjct: 32  MLGSGVITHEMGNGLPDYSNFKKEVHRLEFTIGGYGGVSAGGGVGTKGGAFGSGSGSGGT 91

Query: 61  G------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGSSGG 120
           G                         SGIGG  GGFGGSVGIGGGGG+SGS GIVGS GG
Sbjct: 92  GGGGFGPGIGYGSDGGFGPGIGYGSGSGIGGVSGGFGGSVGIGGGGGISGSGGIVGSGGG 151

Query: 121 GLGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGV---------------- 171
            LG SGGIVGGIGGGV   GG+VG+GG  LGNSGGIVG SGGGV                
Sbjct: 152 VLGGSGGIVGGIGGGV---GGVVGNGGRGLGNSGGIVGDSGGGVRGSGGTGGGYSGSGGT 211

BLAST of PI0024826 vs. NCBI nr
Match: KAE8649877.1 (hypothetical protein Csa_012908 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-39
Identity = 144/215 (66.98%), Postives = 149/215 (69.30%), Query Frame = 0

Query: 1   MLGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGGGVGTKGG-FGSGSGSGGI 60
           MLGS VITHEMGNGLPDYSNFKKEVH LE T+GGYG V AGGGVGTKGG FGSGSGSGG 
Sbjct: 98  MLGSGVITHEMGNGLPDYSNFKKEVHRLEFTIGGYGGVSAGGGVGTKGGAFGSGSGSGGT 157

Query: 61  G------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGSSGG 120
           G                         SGIGG  GGFGGSVGIGGGGG+SGS GIVGS GG
Sbjct: 158 GGGGFGPGIGYGSDGGFGPGIGYGSGSGIGGVSGGFGGSVGIGGGGGISGSGGIVGSGGG 217

Query: 121 GLGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGV---------------- 171
            LG SGGIVGGIGGGV   GG+VG+GG  LGNSGGIVG SGGGV                
Sbjct: 218 VLGGSGGIVGGIGGGV---GGVVGNGGRGLGNSGGIVGDSGGGVRGSGGTGGGYSGSGGT 277

BLAST of PI0024826 vs. NCBI nr
Match: XP_022937240.1 (acanthoscurrin-2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 118/202 (58.42%), Postives = 127/202 (62.87%), Query Frame = 0

Query: 2   LGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGG--GVGTKGGFGS---GSGS 61
           L S +  HEMGNGLP+ +N KKEV+LLELTVGGYG V  GG  G+G  GGFGS   GSGS
Sbjct: 33  LASSMSAHEMGNGLPENTNVKKEVNLLELTVGGYGGVSPGGGSGIGMNGGFGSGYGGSGS 92

Query: 62  GGIG------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGS 121
           GG G                         SG GG GGG GGS GI GGGG+ GS GI GS
Sbjct: 93  GGAGGGGFGSGIGYGSDGGYGPGIGYGSDSGFGGGGGGLGGSGGI-GGGGIGGSGGIGGS 152

Query: 122 -SGGGLGSSGGI-VGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGMGGGYS 171
             GGGLG SGGI  GGIGG  G  GG+ G GGG LG SGGI  G GGGVSGSGG GGG  
Sbjct: 153 GGGGGLGGSGGIGGGGIGGSGGIGGGVGGGGGGGLGGSGGI--GGGGGVSGSGGGGGGVG 212

BLAST of PI0024826 vs. NCBI nr
Match: KAG7024291.1 (hypothetical protein SDJN02_13105, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 116/198 (58.59%), Postives = 125/198 (63.13%), Query Frame = 0

Query: 2   LGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGG--GVGTKGGFGS---GSGS 61
           L S +  HEMGNGLP+ +N KKEV+LLELTVGGYG V  GG  G+G  GGFGS   GSGS
Sbjct: 47  LASSMNAHEMGNGLPEDTNVKKEVNLLELTVGGYGGVSPGGGSGIGMNGGFGSGYGGSGS 106

Query: 62  GGIG------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGS 121
           GG G                         SG GG GGG GGS GIGGGGG+ GS GI   
Sbjct: 107 GGAGGGGLGSGIGYGSDGGYGPGIGYGSGSGFGGGGGGLGGSGGIGGGGGLGGSGGI--- 166

Query: 122 SGGGLGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGMGGGYSGP 171
            GGGLG SGGI    GGG+GG GGI G GGG LG SGGI  G GGGVSGSGG G G SG 
Sbjct: 167 GGGGLGGSGGIG---GGGLGGSGGI-GGGGGGLGGSGGI--GGGGGVSGSGGGGVGGSGG 226

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P097891.9e-0453.57Glycine-rich cell wall structural protein 1 OS=Petunia hybrida OX=4102 GN=GRP-1 ... [more]
Match NameE-valueIdentityDescription
A0A5A7VB201.2e-4171.57Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A1S4DZX51.2e-4171.57glycine-rich cell wall structural protein-like OS=Cucumis melo OX=3656 GN=LOC107... [more]
A0A0A0L2J15.9e-4170.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642350 PE=4 SV=1[more]
A0A6J1FG146.4e-1958.42acanthoscurrin-2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443590 P... [more]
A0A6J1F9U11.1e-1858.21acanthoscurrin-2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443590 P... [more]
Match NameE-valueIdentityDescription
XP_016901290.12.5e-4171.57PREDICTED: glycine-rich cell wall structural protein-like [Cucumis melo] >KAA006... [more]
XP_011654145.21.8e-3966.98glycine-rich protein 5 isoform X1 [Cucumis sativus][more]
KAE8649877.11.8e-3966.98hypothetical protein Csa_012908 [Cucumis sativus][more]
XP_022937240.11.3e-1858.42acanthoscurrin-2-like isoform X1 [Cucurbita moschata][more]
KAG7024291.11.3e-1858.59hypothetical protein SDJN02_13105, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0024826.1PI0024826.1mRNA