Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGGGAGTCATGTGATTACTCATGAAATGGGCAATGGACTTCCAGACTACTCAAACTTTAAAAAGGAAGTTCACCTTTTAGAGCTCACGGTTGGAGGTTATGGGGAAGTACCAGCAGGTGGTGGTGTTGGGACTAAGGGAGGCTTTGGCTCAGGTTCTGGGTCTGGTGGGATTGGAAGTGGTGGATTTGGCCGGGCATTGGTTATGGATCGGATGGTGGCTTTGGACCTGGAATTGGGTATGGCTCAGGTTCAGGCATTGGTGGTGCGGGTGGCGGATTCGGCGGTTCAGTTGGCATTGGAGGTGGTGGTGGAGTAAGTGGGTCAGCTGGTATTGTGGGCAGCAGTGGTGGTGGACTAGGCAGTTCAGGTGGCATCGTGGGTGGCATTGGCGGTGGAGTAGGTGGGCCAGGTGGTATCGTGGGCAGTGGCGGCGGCAGACTAGGCAATTCGGGTGGTATTGTGGGTGGCAGTGGCGGTGGAGTAAGTGGTTCGGGAGGCATGGGTGGTGGGTATAGTGGTCCGGGAGGCATGGGTGATGGTGTTGGTGGTGGTTATGGAGGCAACATGAGTAGTCCTTAA
mRNA sequence
ATGCTTGGGAGTCATGTGATTACTCATGAAATGGGCAATGGACTTCCAGACTACTCAAACTTTAAAAAGGAAGTTCACCTTTTAGAGCTCACGGTTGGAGGTTATGGGGAAGTACCAGCAGGTGGTGGTGTTGGGACTAAGGGAGGCTTTGGCTCAGGTTCTGGGTCTGGTGGGATTGGAAGTTCAGGCATTGGTGGTGCGGGTGGCGGATTCGGCGGTTCAGTTGGCATTGGAGGTGGTGGTGGAGTAAGTGGGTCAGCTGGTATTGTGGGCAGCAGTGGTGGTGGACTAGGCAGTTCAGGTGGCATCGTGGGTGGCATTGGCGGTGGAGTAGGTGGGCCAGGTGGTATCGTGGGCAGTGGCGGCGGCAGACTAGGCAATTCGGGTGGTATTGTGGGTGGCAGTGGCGGTGGAGTAAGTGGTTCGGGAGGCATGGGTGGTGGGTATAGTGGTCCGGGAGGCATGGGTGATGGTGTTGGTGGTGGTTATGGAGGCAACATGAGTAGTCCTTAA
Coding sequence (CDS)
ATGCTTGGGAGTCATGTGATTACTCATGAAATGGGCAATGGACTTCCAGACTACTCAAACTTTAAAAAGGAAGTTCACCTTTTAGAGCTCACGGTTGGAGGTTATGGGGAAGTACCAGCAGGTGGTGGTGTTGGGACTAAGGGAGGCTTTGGCTCAGGTTCTGGGTCTGGTGGGATTGGAAGTTCAGGCATTGGTGGTGCGGGTGGCGGATTCGGCGGTTCAGTTGGCATTGGAGGTGGTGGTGGAGTAAGTGGGTCAGCTGGTATTGTGGGCAGCAGTGGTGGTGGACTAGGCAGTTCAGGTGGCATCGTGGGTGGCATTGGCGGTGGAGTAGGTGGGCCAGGTGGTATCGTGGGCAGTGGCGGCGGCAGACTAGGCAATTCGGGTGGTATTGTGGGTGGCAGTGGCGGTGGAGTAAGTGGTTCGGGAGGCATGGGTGGTGGGTATAGTGGTCCGGGAGGCATGGGTGATGGTGTTGGTGGTGGTTATGGAGGCAACATGAGTAGTCCTTAA
Protein sequence
MLGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGGGVGTKGGFGSGSGSGGIGSSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGSSGGGLGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGMGGGYSGPGGMGDGVGGGYGGNMSSP
Homology
BLAST of PI0024826 vs. ExPASy Swiss-Prot
Match:
P09789 (Glycine-rich cell wall structural protein 1 OS=Petunia hybrida OX=4102 GN=GRP-1 PE=1 SV=1)
HSP 1 Score: 47.4 bits (111), Expect = 1.9e-04
Identity = 75/140 (53.57%), Postives = 84/140 (60.00%), Query Frame = 0
Query: 33 GGYGEVPAGGGVGTKGGFGSGSGSGGIGS-SGIGGAGGGFGGSVGIGGGGGVSGSAGIVG 92
GG AGGG+G GG G G G+GG G G GGAGGGFGG G G GGG+ G G+ G
Sbjct: 72 GGGAGGGAGGGLGGGGGLGGGGGAGGGGGLGGGGGAGGGFGGGAGGGAGGGLGGGGGLGG 131
Query: 93 SSGGGLGSSGGIVGGIGGGVG-GPGGIVGSG---GGRLGNSGGIVGGSGGGVSGSGGMGG 152
GGG G GG+ GG G G G G GG VG G GG +G GG GG GGGV G G GG
Sbjct: 132 GGGGGAGGGGGVGGGAGSGGGFGAGGGVGGGAGAGGGVGGGGGFGGGGGGGVGGGSGHGG 191
Query: 153 GYSGPGGMGDGVGGGYGGNM 168
G+ GG+G G GGG GG +
Sbjct: 192 GFGAGGGVGGGAGGGLGGGV 211
BLAST of PI0024826 vs. ExPASy TrEMBL
Match:
A0A5A7VB20 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002870 PE=4 SV=1)
HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 146/204 (71.57%), Postives = 147/204 (72.06%), Query Frame = 0
Query: 1 MLGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGGGVGTKGGFGSGSGSGGIG 60
MLGS VITHEM N LPDYSNFK EVHLLEL VGGYG V AGGGVGTKG FGS SGSGG G
Sbjct: 29 MLGSDVITHEMVNKLPDYSNFKNEVHLLELMVGGYGGVSAGGGVGTKGVFGSSSGSGGTG 88
Query: 61 ------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGSSGGG 120
SGIGGAGGGFGGSVGIGGGGGVSGS GIVGS GGG
Sbjct: 89 GGGFGAGIGYGSDGGFGPGIGYGSGSGIGGAGGGFGGSVGIGGGGGVSGSGGIVGSGGGG 148
Query: 121 LGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGM----------G 171
LG S GGIGGGVGGPGGIVGSGGG LGNSGGIVG SGGGVSGSGGM G
Sbjct: 149 LGGS----GGIGGGVGGPGGIVGSGGGGLGNSGGIVGDSGGGVSGSGGMGGGYSGSGGSG 208
BLAST of PI0024826 vs. ExPASy TrEMBL
Match:
A0A1S4DZX5 (glycine-rich cell wall structural protein-like OS=Cucumis melo OX=3656 GN=LOC107991221 PE=4 SV=1)
HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 146/204 (71.57%), Postives = 147/204 (72.06%), Query Frame = 0
Query: 1 MLGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGGGVGTKGGFGSGSGSGGIG 60
MLGS VITHEM N LPDYSNFK EVHLLEL VGGYG V AGGGVGTKG FGS SGSGG G
Sbjct: 29 MLGSDVITHEMVNKLPDYSNFKNEVHLLELMVGGYGGVSAGGGVGTKGVFGSSSGSGGTG 88
Query: 61 ------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGSSGGG 120
SGIGGAGGGFGGSVGIGGGGGVSGS GIVGS GGG
Sbjct: 89 GGGFGAGIGYGSDGGFGPGIGYGSGSGIGGAGGGFGGSVGIGGGGGVSGSGGIVGSGGGG 148
Query: 121 LGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGM----------G 171
LG S GGIGGGVGGPGGIVGSGGG LGNSGGIVG SGGGVSGSGGM G
Sbjct: 149 LGGS----GGIGGGVGGPGGIVGSGGGGLGNSGGIVGDSGGGVSGSGGMGGGYSGSGGSG 208
BLAST of PI0024826 vs. ExPASy TrEMBL
Match:
A0A0A0L2J1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642350 PE=4 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 5.9e-41
Identity = 144/205 (70.24%), Postives = 149/205 (72.68%), Query Frame = 0
Query: 1 MLGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGGGVGTKGG-FGSGSGSGGI 60
MLGS VITHEMGNGLPDYSNFKKEVH LE T+GGYG V AGGGVGTKGG FGSGSGSGG
Sbjct: 32 MLGSGVITHEMGNGLPDYSNFKKEVHRLEFTIGGYGGVSAGGGVGTKGGAFGSGSGSGGT 91
Query: 61 G------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGSSGG 120
G SGIGG GGFGGSVGIGGGGG+SGS GIVGS GG
Sbjct: 92 GGGGFGPGIGYGSDGGFGPGIGYGSGSGIGGVSGGFGGSVGIGGGGGISGSGGIVGSGGG 151
Query: 121 GLGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGV----------SGSGGM 171
LG SGGIVGGIGGGV GG+VG+GG LGNSGGIVG SGGGV SGSGG
Sbjct: 152 VLGGSGGIVGGIGGGV---GGVVGNGGRGLGNSGGIVGDSGGGVRGSGGTGGGYSGSGGT 211
BLAST of PI0024826 vs. ExPASy TrEMBL
Match:
A0A6J1FG14 (acanthoscurrin-2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443590 PE=4 SV=1)
HSP 1 Score: 104.0 bits (258), Expect = 6.4e-19
Identity = 118/202 (58.42%), Postives = 127/202 (62.87%), Query Frame = 0
Query: 2 LGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGG--GVGTKGGFGS---GSGS 61
L S + HEMGNGLP+ +N KKEV+LLELTVGGYG V GG G+G GGFGS GSGS
Sbjct: 33 LASSMSAHEMGNGLPENTNVKKEVNLLELTVGGYGGVSPGGGSGIGMNGGFGSGYGGSGS 92
Query: 62 GGIG------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGS 121
GG G SG GG GGG GGS GI GGGG+ GS GI GS
Sbjct: 93 GGAGGGGFGSGIGYGSDGGYGPGIGYGSDSGFGGGGGGLGGSGGI-GGGGIGGSGGIGGS 152
Query: 122 -SGGGLGSSGGI-VGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGMGGGYS 171
GGGLG SGGI GGIGG G GG+ G GGG LG SGGI G GGGVSGSGG GGG
Sbjct: 153 GGGGGLGGSGGIGGGGIGGSGGIGGGVGGGGGGGLGGSGGI--GGGGGVSGSGGGGGGVG 212
BLAST of PI0024826 vs. ExPASy TrEMBL
Match:
A0A6J1F9U1 (acanthoscurrin-2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443590 PE=4 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 117/201 (58.21%), Postives = 126/201 (62.69%), Query Frame = 0
Query: 2 LGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGG--GVGTKGGFGS---GSGS 61
L S + HEMGNGLP+ +N KKEV+LLELTVGGYG V GG G+G GGFGS GSGS
Sbjct: 33 LASSMSAHEMGNGLPENTNVKKEVNLLELTVGGYGGVSPGGGSGIGMNGGFGSGYGGSGS 92
Query: 62 GGIG------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGS 121
GG G SG GG GGG GGS GI GGGG+ GS GI GS
Sbjct: 93 GGAGGGGFGSGIGYGSDGGYGPGIGYGSDSGFGGGGGGLGGSGGI-GGGGIGGSGGIGGS 152
Query: 122 -SGGGLGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGMGGGYSG 171
GGGLG SGGI GGG+GG GGI GGG LG SGGI G GGGVSGSGG GGG G
Sbjct: 153 GGGGGLGGSGGIG---GGGIGGSGGI---GGGGLGGSGGI--GGGGGVSGSGGGGGGVGG 212
BLAST of PI0024826 vs. NCBI nr
Match:
XP_016901290.1 (PREDICTED: glycine-rich cell wall structural protein-like [Cucumis melo] >KAA0064430.1 glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYK20158.1 glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 179.5 bits (454), Expect = 2.5e-41
Identity = 146/204 (71.57%), Postives = 147/204 (72.06%), Query Frame = 0
Query: 1 MLGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGGGVGTKGGFGSGSGSGGIG 60
MLGS VITHEM N LPDYSNFK EVHLLEL VGGYG V AGGGVGTKG FGS SGSGG G
Sbjct: 29 MLGSDVITHEMVNKLPDYSNFKNEVHLLELMVGGYGGVSAGGGVGTKGVFGSSSGSGGTG 88
Query: 61 ------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGSSGGG 120
SGIGGAGGGFGGSVGIGGGGGVSGS GIVGS GGG
Sbjct: 89 GGGFGAGIGYGSDGGFGPGIGYGSGSGIGGAGGGFGGSVGIGGGGGVSGSGGIVGSGGGG 148
Query: 121 LGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGM----------G 171
LG S GGIGGGVGGPGGIVGSGGG LGNSGGIVG SGGGVSGSGGM G
Sbjct: 149 LGGS----GGIGGGVGGPGGIVGSGGGGLGNSGGIVGDSGGGVSGSGGMGGGYSGSGGSG 208
BLAST of PI0024826 vs. NCBI nr
Match:
XP_011654145.2 (glycine-rich protein 5 isoform X1 [Cucumis sativus])
HSP 1 Score: 173.3 bits (438), Expect = 1.8e-39
Identity = 144/215 (66.98%), Postives = 149/215 (69.30%), Query Frame = 0
Query: 1 MLGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGGGVGTKGG-FGSGSGSGGI 60
MLGS VITHEMGNGLPDYSNFKKEVH LE T+GGYG V AGGGVGTKGG FGSGSGSGG
Sbjct: 32 MLGSGVITHEMGNGLPDYSNFKKEVHRLEFTIGGYGGVSAGGGVGTKGGAFGSGSGSGGT 91
Query: 61 G------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGSSGG 120
G SGIGG GGFGGSVGIGGGGG+SGS GIVGS GG
Sbjct: 92 GGGGFGPGIGYGSDGGFGPGIGYGSGSGIGGVSGGFGGSVGIGGGGGISGSGGIVGSGGG 151
Query: 121 GLGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGV---------------- 171
LG SGGIVGGIGGGV GG+VG+GG LGNSGGIVG SGGGV
Sbjct: 152 VLGGSGGIVGGIGGGV---GGVVGNGGRGLGNSGGIVGDSGGGVRGSGGTGGGYSGSGGT 211
BLAST of PI0024826 vs. NCBI nr
Match:
KAE8649877.1 (hypothetical protein Csa_012908 [Cucumis sativus])
HSP 1 Score: 173.3 bits (438), Expect = 1.8e-39
Identity = 144/215 (66.98%), Postives = 149/215 (69.30%), Query Frame = 0
Query: 1 MLGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGGGVGTKGG-FGSGSGSGGI 60
MLGS VITHEMGNGLPDYSNFKKEVH LE T+GGYG V AGGGVGTKGG FGSGSGSGG
Sbjct: 98 MLGSGVITHEMGNGLPDYSNFKKEVHRLEFTIGGYGGVSAGGGVGTKGGAFGSGSGSGGT 157
Query: 61 G------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGSSGG 120
G SGIGG GGFGGSVGIGGGGG+SGS GIVGS GG
Sbjct: 158 GGGGFGPGIGYGSDGGFGPGIGYGSGSGIGGVSGGFGGSVGIGGGGGISGSGGIVGSGGG 217
Query: 121 GLGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGV---------------- 171
LG SGGIVGGIGGGV GG+VG+GG LGNSGGIVG SGGGV
Sbjct: 218 VLGGSGGIVGGIGGGV---GGVVGNGGRGLGNSGGIVGDSGGGVRGSGGTGGGYSGSGGT 277
BLAST of PI0024826 vs. NCBI nr
Match:
XP_022937240.1 (acanthoscurrin-2-like isoform X1 [Cucurbita moschata])
HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 118/202 (58.42%), Postives = 127/202 (62.87%), Query Frame = 0
Query: 2 LGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGG--GVGTKGGFGS---GSGS 61
L S + HEMGNGLP+ +N KKEV+LLELTVGGYG V GG G+G GGFGS GSGS
Sbjct: 33 LASSMSAHEMGNGLPENTNVKKEVNLLELTVGGYGGVSPGGGSGIGMNGGFGSGYGGSGS 92
Query: 62 GGIG------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGS 121
GG G SG GG GGG GGS GI GGGG+ GS GI GS
Sbjct: 93 GGAGGGGFGSGIGYGSDGGYGPGIGYGSDSGFGGGGGGLGGSGGI-GGGGIGGSGGIGGS 152
Query: 122 -SGGGLGSSGGI-VGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGMGGGYS 171
GGGLG SGGI GGIGG G GG+ G GGG LG SGGI G GGGVSGSGG GGG
Sbjct: 153 GGGGGLGGSGGIGGGGIGGSGGIGGGVGGGGGGGLGGSGGI--GGGGGVSGSGGGGGGVG 212
BLAST of PI0024826 vs. NCBI nr
Match:
KAG7024291.1 (hypothetical protein SDJN02_13105, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18
Identity = 116/198 (58.59%), Postives = 125/198 (63.13%), Query Frame = 0
Query: 2 LGSHVITHEMGNGLPDYSNFKKEVHLLELTVGGYGEVPAGG--GVGTKGGFGS---GSGS 61
L S + HEMGNGLP+ +N KKEV+LLELTVGGYG V GG G+G GGFGS GSGS
Sbjct: 47 LASSMNAHEMGNGLPEDTNVKKEVNLLELTVGGYGGVSPGGGSGIGMNGGFGSGYGGSGS 106
Query: 62 GGIG------------------------SSGIGGAGGGFGGSVGIGGGGGVSGSAGIVGS 121
GG G SG GG GGG GGS GIGGGGG+ GS GI
Sbjct: 107 GGAGGGGLGSGIGYGSDGGYGPGIGYGSGSGFGGGGGGLGGSGGIGGGGGLGGSGGI--- 166
Query: 122 SGGGLGSSGGIVGGIGGGVGGPGGIVGSGGGRLGNSGGIVGGSGGGVSGSGGMGGGYSGP 171
GGGLG SGGI GGG+GG GGI G GGG LG SGGI G GGGVSGSGG G G SG
Sbjct: 167 GGGGLGGSGGIG---GGGLGGSGGI-GGGGGGLGGSGGI--GGGGGVSGSGGGGVGGSGG 226
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P09789 | 1.9e-04 | 53.57 | Glycine-rich cell wall structural protein 1 OS=Petunia hybrida OX=4102 GN=GRP-1 ... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7VB20 | 1.2e-41 | 71.57 | Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11... | [more] |
A0A1S4DZX5 | 1.2e-41 | 71.57 | glycine-rich cell wall structural protein-like OS=Cucumis melo OX=3656 GN=LOC107... | [more] |
A0A0A0L2J1 | 5.9e-41 | 70.24 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642350 PE=4 SV=1 | [more] |
A0A6J1FG14 | 6.4e-19 | 58.42 | acanthoscurrin-2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443590 P... | [more] |
A0A6J1F9U1 | 1.1e-18 | 58.21 | acanthoscurrin-2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443590 P... | [more] |
Match Name | E-value | Identity | Description | |
XP_016901290.1 | 2.5e-41 | 71.57 | PREDICTED: glycine-rich cell wall structural protein-like [Cucumis melo] >KAA006... | [more] |
XP_011654145.2 | 1.8e-39 | 66.98 | glycine-rich protein 5 isoform X1 [Cucumis sativus] | [more] |
KAE8649877.1 | 1.8e-39 | 66.98 | hypothetical protein Csa_012908 [Cucumis sativus] | [more] |
XP_022937240.1 | 1.3e-18 | 58.42 | acanthoscurrin-2-like isoform X1 [Cucurbita moschata] | [more] |
KAG7024291.1 | 1.3e-18 | 58.59 | hypothetical protein SDJN02_13105, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |