PI0024814 (gene) Melon (PI 482460) v1

Overview


Name	PI0024814
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Cold-regulated protein, putative
Location	chr06: 13277979 .. 13278212 (+)
RNA-Seq Expression	PI0024814
Synteny	PI0024814

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTGAGACACGGTGTTCCGGTCTGCATCGAGTGTGGGACTCACAGGAATCCGTGCAGGTGCAAGGTGGTGGGGCCAACCTTGGGATTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCGGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGGCATCCAGTCACCGTCGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGA

mRNA sequence

ATGGCTGTGAGACACGGTGTTCCGGTCTGCATCGAGTGTGGGACTCACAGGAATCCGTGCAGGTGCAAGGTGGTGGGGCCAACCTTGGGATTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCGGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGGCATCCAGTCACCGTCGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGA

Coding sequence (CDS)

ATGGCTGTGAGACACGGTGTTCCGGTCTGCATCGAGTGTGGGACTCACAGGAATCCGTGCAGGTGCAAGGTGGTGGGGCCAACCTTGGGATTCTTAGCCTTGGTTGTGACGGCGGTGGTGGAGTGGCCGGTCGGAGCTCTGGTTTACTTATTCCGCCACCACAAAGGCCGCCGTATCATGGGGCATCCAGTCACCGTCGTTTACCCTTCCGTGTCTAATGCGATTCCTATTTGA

Protein sequence

MAVRHGVPVCIECGTHRNPCRCKVVGPTLGFLALVVTAVVEWPVGALVYLFRHHKGRRIMGHPVTVVYPSVSNAIPI

Homology

[Close]

BLAST of PI0024814 vs. ExPASy TrEMBL
Match: A0A0A0L786 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346920 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.9e-35
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MAVRHGVPVCIECGTHRNPCRCKVVGPTLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          M VR GVP+CIECGTHRNPCRC++VGP+LGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of PI0024814 vs. ExPASy TrEMBL
Match: A0A5A7V0B2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00590 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.2e-34
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MAVRHGVPVCIECGTHRNPCRCKVVGPTLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          M V  GVP CI+CGTHRNPCRC+VVGP+LGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1  MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of PI0024814 vs. ExPASy TrEMBL
Match: A0A6J1FA13 (uncharacterized protein LOC111442190 OS=Cucurbita moschata OX=3662 GN=LOC111442190 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.0e-33
Identity = 68/77 (88.31%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MAVRHGVPVCIECGTHRNPCRCKVVGPTLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MAV  GVPVC+ECGTHRNPCRCKVVGPTLGFLA  V AVVEWPVGALVY FRHHKGRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
           HPVTVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of PI0024814 vs. ExPASy TrEMBL
Match: A0A1S3C5C8 (uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-31
Identity = 66/77 (85.71%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1  MAVRHGVPVCIECGTHRNPCRCKVVGPTLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MAV  GVP+CIECGTH NPCRCKVVGPTLGFLA  V AVVEWPVGALV+ FRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
           HP TVVYPSVSNAIPI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of PI0024814 vs. ExPASy TrEMBL
Match: A0A0A0LA45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.3e-31
Identity = 64/77 (83.12%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1  MAVRHGVPVCIECGTHRNPCRCKVVGPTLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          M V  GVP+CIECGTH NPCRCKVVGPTLGFLA  V AVVEWPVGALV+ FRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
           HP TVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of PI0024814 vs. NCBI nr
Match: XP_004150936.1 (uncharacterized protein LOC101215155 [Cucumis sativus] >XP_031738782.1 uncharacterized protein LOC116402768 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 1.0e-34
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MAVRHGVPVCIECGTHRNPCRCKVVGPTLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          M VR GVP+CIECGTHRNPCRC++VGP+LGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of PI0024814 vs. NCBI nr
Match: KAA0060760.1 (uncharacterized protein E6C27_scaffold72G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 1.9e-33
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MAVRHGVPVCIECGTHRNPCRCKVVGPTLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          M V  GVP CI+CGTHRNPCRC+VVGP+LGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1  MGVGLGVPFCIDCGTHRNPCRCRVVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
          GHPVTVVYPSVSNAIPI
Sbjct: 61 GHPVTVVYPSVSNAIPI 77

[Close]

BLAST of PI0024814 vs. NCBI nr
Match: XP_022935253.1 (uncharacterized protein LOC111442190 [Cucurbita moschata])

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 68/77 (88.31%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MAVRHGVPVCIECGTHRNPCRCKVVGPTLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MAV  GVPVC+ECGTHRNPCRCKVVGPTLGFLA  V AVVEWPVGALVY FRHHKGRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
           HPVTVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of PI0024814 vs. NCBI nr
Match: XP_023528466.1 (uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32
Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MAVRHGVPVCIECGTHRNPCRCKVVGPTLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          MAV  GVP+C+ECGTHRNPCRCKVVGPTLGFLA  V AVVEWPVGALVY FRHHKGRRIM
Sbjct: 1  MAVGIGVPICVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 GHPVTVVYPSVSNAIPI 78
           HPVTVVYPSVSNA+PI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of PI0024814 vs. NCBI nr
Match: KAE8650630.1 (hypothetical protein Csa_009886 [Cucumis sativus] >KAE8653004.1 hypothetical protein Csa_004549 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 2.3e-31
Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  MAVRHGVPVCIECGTHRNPCRCKVVGPTLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60
          M VR GVP+CIECGTHRNPCRC++VGP+LGFLALVVTAVVEWPVGALVYLFRHHKGRRIM
Sbjct: 1  MGVRLGVPICIECGTHRNPCRCRLVGPSLGFLALVVTAVVEWPVGALVYLFRHHKGRRIM 60

Query: 61 GHPVTVVYPSV 72
          GHPVTVVYPSV
Sbjct: 61 GHPVTVVYPSV 71

[Close]

BLAST of PI0024814 vs. TAIR 10
Match: AT3G03341.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-27
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 7  VPVCIECGTHRNPCRCKVVGPTLGFLALVVTAVVEWPVGALVYLFRHHKGRRIMGHPVTV 66
          +P+C++CGT  NPCRCKVVGPTLG +A V   +VEWPVGALVY+F+H KGRRIMGHP T 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VYPSVSNAIPI 78
          VYP VS +IPI
Sbjct: 62 VYPKVSRSIPI 72

The following BLAST results are available for this feature:

BLAST of PI0024814 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024814 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L786	4.9e-35	92.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346920 PE=4 SV=1	[more]
A0A5A7V0B2	9.2e-34	90.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1FA13	6.0e-33	88.31	uncharacterized protein LOC111442190 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]
A0A1S3C5C8	1.9e-31	85.71	uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=...	[more]
A0A0A0LA45	7.3e-31	83.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1	[more]

BLAST of PI0024814 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150936.1	1.0e-34	92.21	uncharacterized protein LOC101215155 [Cucumis sativus] >XP_031738782.1 uncharact...	[more]
KAA0060760.1	1.9e-33	90.91	uncharacterized protein E6C27_scaffold72G00590 [Cucumis melo var. makuwa]	[more]
XP_022935253.1	1.2e-32	88.31	uncharacterized protein LOC111442190 [Cucurbita moschata]	[more]
XP_023528466.1	1.6e-32	87.01	uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo]	[more]
KAE8650630.1	2.3e-31	91.55	hypothetical protein Csa_009886 [Cucumis sativus] >KAE8653004.1 hypothetical pro...	[more]

BLAST of PI0024814 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03341.1	1.3e-27	70.42	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 6..77
None	No IPR available	PANTHER	PTHR34673:SF2	BNAA10G17250D PROTEIN	coord: 6..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024814.1	PI0024814.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane