PI0024764 (gene) Melon (PI 482460) v1

Overview


Name	PI0024764
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr07: 22644886 .. 22645792 (-)
RNA-Seq Expression	PI0024764
Synteny	PI0024764

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGGAGGGTAGGATCAGAAAGTGATACAGCAACCAAAACACCCCAAAAGAAGCTAAAAAAAAAAAAAAAACAAAAAAACAAAAATCCTGAGCTTCAAACAATGTAAGGGAAAAACATGAAAGTGAAGAAATAGTTTGAAGGGGGGGGGGGGGGGGGGGGGGGGTAAAGGGTGAGAAGAGAAGGGGTAGTTGAGGAATTAGAAGGGGGTATTGTGTTATAACTGTAGAGAGTTAACTGCTAGGACAACAACCACTATCATTTTCCTTAGTCTTCACTACACACCAGCACAGACGGTTGCGTCTGTGAAACTTTTATTGTCGTCTTTCCCGAAATACCCTCCACCGGAGGTTTAGGGGATATTACGATAGTAACCCTGTAGAGTTTGTTTTCTTGAATACCACGGTATCCGTATTATGGAATATAGAAATGTATGAGGTGGAATGGAAGAGGGAGAATAAAGTGTAAGTGGGAATGGAATCGATGAGTGAAGTGAGTCCAGTAAGGTTAATAATGAAATGGTGAAGAGAGAAACAAAGACATGGTAGCGTGGTAAGGAATGCACGTGAGGGAAGTGGATGGATGGATGGATTTAAGTGAAAGGGTTAGTTAGTTTGAAGAAAATGGTGGCTAAATGGCGCCTACCGATAGGGACTGGGGGGAGGAGGAGGAGGTGGTGATGTGGTGGCCGGGAAGGAAGTAAAAAGCCAAGTGAGGAAAGAGAGAAAAAAGAAAAAAAAAAAAATGAAAATTAAAGAGGTCCCACTCAAAATGAGACAGTGCCAGCTGGTGGTCTCCCACACTCACATGGCGTTTGATCGTTTATAACCAGCTGGACCCCACCTTCTCTCGGTCAGACTCTGTGAACCCCACTTTTTCCTTTTTTTTTTTTTTACTTCCATAG

mRNA sequence

ATGGTGGAGGAGGGTAGGATCAGAAAAGAGTTAACTGCTAGGACAACAACCACTATCATTTTCCTTAGTCTTCACTACACACCAGCACAGACGGTTGCGTCTGTGAAACTTTTATTGTCGTCTTTCCCGAAATACCCTCCACCGGAGTTTGTTTTCTTGAATACCACGGTATCCGTATTATGGAATATAGAAATGTATGAGGTGGAATGGAAGAGGGAGAATAAAAAAATGGTGGCTAAATGGCGCCTACCGATAGGGACTGGGGGGAGGAGGAGGAGGTGTGCCAGCTGGTGGTCTCCCACACTCACATGGCGTTTGATCGTTTATAACCAGCTGGACCCCACCTTCTCTCGGTCAGACTCTGTGAACCCCACTTTTTCCTTTTTTTTTTTTTTACTTCCATAG

Coding sequence (CDS)

ATGGTGGAGGAGGGTAGGATCAGAAAAGAGTTAACTGCTAGGACAACAACCACTATCATTTTCCTTAGTCTTCACTACACACCAGCACAGACGGTTGCGTCTGTGAAACTTTTATTGTCGTCTTTCCCGAAATACCCTCCACCGGAGTTTGTTTTCTTGAATACCACGGTATCCGTATTATGGAATATAGAAATGTATGAGGTGGAATGGAAGAGGGAGAATAAAAAAATGGTGGCTAAATGGCGCCTACCGATAGGGACTGGGGGGAGGAGGAGGAGGTGTGCCAGCTGGTGGTCTCCCACACTCACATGGCGTTTGATCGTTTATAACCAGCTGGACCCCACCTTCTCTCGGTCAGACTCTGTGAACCCCACTTTTTCCTTTTTTTTTTTTTTACTTCCATAG

Protein sequence

MVEEGRIRKELTARTTTTIIFLSLHYTPAQTVASVKLLLSSFPKYPPPEFVFLNTTVSVLWNIEMYEVEWKRENKKMVAKWRLPIGTGGRRRRCASWWSPTLTWRLIVYNQLDPTFSRSDSVNPTFSFFFFLLP

Homology

[Close]

BLAST of PI0024764 vs. ExPASy TrEMBL
Match: A0A0A0L3N2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641560 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.2e-43
Identity = 120/206 (58.25%), Postives = 125/206 (60.68%), Query Frame = 0


Query: 1   MVEEGRIRKELTARTTTTIIFLSLHYTPAQTVASVKLLLSSFPKYPPP------------ 60
           MVEEGRIRKELTARTTTTIIFLSLHYTPAQTVASVKLLLSSFPKYP P            
Sbjct: 42  MVEEGRIRKELTARTTTTIIFLSLHYTPAQTVASVKLLLSSFPKYPSPDRRFREYYESTP 101

Query: 61  -EFVFLNTTVSVLWNIEMYEVEWKR-ENK---------------------KMVAKWRLPI 120
            EFVFLNTTVSVLWN+EMYEVEW+  ENK                     KMVAKWRL  
Sbjct: 102 VEFVFLNTTVSVLWNMEMYEVEWEEGENKVLVGMESMSEVSPASKVNDEMKMVAKWRL-- 161

Query: 121 GT-------------GGR-------RRRCASWWSPTLTWRLIVYNQLDPTFSRSDSVNPT 135
           GT             GGR       +   ASWWSPTLTWRLIVYNQLDPTFSRSDSV PT
Sbjct: 162 GTDGDLAGAKEEEEEGGRMVAGERSKEANASWWSPTLTWRLIVYNQLDPTFSRSDSVAPT 221

[Close]

BLAST of PI0024764 vs. NCBI nr
Match: KGN55222.1 (hypothetical protein Csa_012177 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 4.6e-43
Identity = 120/206 (58.25%), Postives = 125/206 (60.68%), Query Frame = 0


Query: 1   MVEEGRIRKELTARTTTTIIFLSLHYTPAQTVASVKLLLSSFPKYPPP------------ 60
           MVEEGRIRKELTARTTTTIIFLSLHYTPAQTVASVKLLLSSFPKYP P            
Sbjct: 42  MVEEGRIRKELTARTTTTIIFLSLHYTPAQTVASVKLLLSSFPKYPSPDRRFREYYESTP 101

Query: 61  -EFVFLNTTVSVLWNIEMYEVEWKR-ENK---------------------KMVAKWRLPI 120
            EFVFLNTTVSVLWN+EMYEVEW+  ENK                     KMVAKWRL  
Sbjct: 102 VEFVFLNTTVSVLWNMEMYEVEWEEGENKVLVGMESMSEVSPASKVNDEMKMVAKWRL-- 161

Query: 121 GT-------------GGR-------RRRCASWWSPTLTWRLIVYNQLDPTFSRSDSVNPT 135
           GT             GGR       +   ASWWSPTLTWRLIVYNQLDPTFSRSDSV PT
Sbjct: 162 GTDGDLAGAKEEEEEGGRMVAGERSKEANASWWSPTLTWRLIVYNQLDPTFSRSDSVAPT 221

The following BLAST results are available for this feature:

BLAST of PI0024764 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024764 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3N2	2.2e-43	58.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641560 PE=4 SV=1	[more]

BLAST of PI0024764 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55222.1	4.6e-43	58.25	hypothetical protein Csa_012177 [Cucumis sativus]	[more]

BLAST of PI0024764 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024764.1	PI0024764.1	mRNA