PI0024763 (gene) Melon (PI 482460) v1

Overview
NamePI0024763
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionReplication protein A 14 kDa subunit B-like
Locationchr10: 21048675 .. 21051139 (+)
RNA-Seq ExpressionPI0024763
SyntenyPI0024763
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGAAATAGCCTAAATGATAAAGATCAGTAAATAAATCTTGATATTGGAAAAAAGAAGAGCAAGGAAAATGGAATAAATGACAAAATTTCGGCTTTTAACCTCGTTCCCGCCAAAGTATCTCCTTGGTCAAGAACCGGCCATAAATTCCCGCCTCTTCTTAGTTCGTCACTTGAACTTCTCGATCTCTATCCGAATTCTCTCTCTCTCTCTCTCTGTCCCTCTCTTTGAATCGTGCTCGGAAGAATCATAGTCTCACAGGTACGCTTTAGAAATGGTTCTGAGCCACCAGATTTAGGGTTTGAGACCTTCTGCTACTTAGATCGTTCCGTTATTTAACTACTTGAATTTCTATATTGTATGCAAGATAGTTGCTGTGATAATCTTCTGTGAAATTGATCGAAATGTTTAATTTGATTGATTGTAATCTTCTTCGCACGAACAGTGTAATTGATTGCTGTTCTTGTAGTAGTTGTATGTTATGGTCGCCATATTAGCAATGGAAATTAAAATCGGTTTGCTTACAATCCTTTCCGTGTTTGTTTCTTTTAAAGTTGCATTCTGTTTCTGCACTTGTGCTATCGGTTAGTACTTTTATGATTCGGTTCTTATACGATTCTGTTATACCCATGCCATGAGTTGAACAGAGTTACTACAGGTCATGATCTCAATTGTCTGTTGTGCTAAATGTTATAGTTGCATAAAGTAGTTTGTTCCTGATGTTTTACCATTGAGACTAAAAGATGATGTTTATTTATTTGGTGAATGCCATTTTTCTTATGTAGAATAGAGTTCTTAATTTGCTTTCCGACGCTTTTGCTTTCTCCCTTGCATGTAGAAGGAGCGCTATCATCTTAGATTTATAAGGGGGAAATTCCTTTATTAAAATCTAAACATTGAACTTGTATCAACCTAAGCCTTTAACTTTGAGCATTGAATCAATTTAGACCTTTCCTATTAGAATTAGTTTTAATACTGTTGATGCATATTTTTCATAACTGCATGAGACTTTTCATTAAATTTAAGTTATCCTTTCATCCATTCATTTTTTCTAATGCTTTATTTATAAAGCATTACCGAGCTACTTTGGTAATGTGTTGAACAATATTATTTAGATGATTTTGAACTATTGATTGATTTGAATTTTTGAATTGATTCGCTTTTAGATTTTAAATTGATACAAATATAGTTTGAGGTTTTAATTATACAATCTCCAATTTAAGAGTATAAACTATAAACTGATATTTGCCTAGATTTATTCAATTTGTAAGTGTAGACTACACATGTTTCCAGTTAATTTAGTCTGGTTTGAACATTACACTGTCATGATCTTATCACACTAACTGTATAATCCTAAACATCATGTCATTCGTCATTGTTGGTTTTTCAGGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGCGCTGGTGGAATCGTTACGGGAAAATCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACAGTCCCTCACATGAACTTTGTAGAGGTAGTTGGTATTGCTGAGAGCAACAAGACCATCAAGGTTGAACACTGGACCGACTTTGGAACCACTTTTGGTATGTACTATAACCATTTCTTTCTGTTGTCCTATTATGGGTTGGTCTAGTAATAAAAAATGAGAGTCCTTGATAATATCTCACTGTTGCGAATGGGTTTGAAAGCTCAGCAAATGCCATTTGTTCTTTTCATGATCTATCTTTTCTCTTATCACTCGTAAATGCTAGATTACATATTAGACAGTTTTTTTTTTTTTTTTTTGTATGTTGACAAAGATTATTTTTTCTTTTATTCCATTGAGAATCATTGTGGAATTACCGAAAGAGAGAATGGGTTTTTGTGGCGTTTTGCCTTCCCTGAGTTGCCTCGTCTGTTGTTAAGGAGGAGCAGAGTTATACCCAATTTTGTTTGGGCTTTAATGATTTGTTTTCATGGACTAACTTGTAATATACCTATTTTTCAGATACTGAATCTTACAATCAGCTATGCCGACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAGTGATTTGTAGGTACGGCATGAGAAGAAGCAAGAGGTATAATTTGTTATGTGATTTTGAGTCTTCTATGCTTGTAACTCATGTGGAGTGCTGAACCACTAATCTCTTAAAAGAACTTGTGTTTTGGTATGTGTAGTGTACTAAGCTAGGAGTGAACTACAAAATTTCCATGGACTTTAGGGGTTTCAATTTCCCGGGTACTTTAATTCACATTTTTCACTAGAAAAAACCTTGGTGCACTTAAGCTTCATTCATCTCTTTTATAGCCCGGTTGTTATCCAATTAAAATGCGTTATCGGTATTGTTTCTTTTATTTGTGTGGTAAATAAGAACGGAGTTAGGTTGCATCTA

mRNA sequence

TGGAAATAGCCTAAATGATAAAGATCAGTAAATAAATCTTGATATTGGAAAAAAGAAGAGCAAGGAAAATGGAATAAATGACAAAATTTCGGCTTTTAACCTCGTTCCCGCCAAAGTATCTCCTTGGTCAAGAACCGGCCATAAATTCCCGCCTCTTCTTAGTTCGTCACTTGAACTTCTCGATCTCTATCCGAATTCTCTCTCTCTCTCTCTCTGTCCCTCTCTTTGAATCGTGCTCGGAAGAATCATAGTCTCACAGGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGCGCTGGTGGAATCGTTACGGGAAAATCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACAGTCCCTCACATGAACTTTGTAGAGGTAGTTGGTATTGCTGAGAGCAACAAGACCATCAAGGTTGAACACTGGACCGACTTTGGAACCACTTTTGATACTGAATCTTACAATCAGCTATGCCGACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAGTGATTTGTAGGTACGGCATGAGAAGAAGCAAGAGGTATAATTTGTTATGTGATTTTGAGTCTTCTATGCTTGTAACTCATGTGGAGTGCTGAACCACTAATCTCTTAAAAGAACTTGTGTTTTGGTATGTGTAGTGTACTAAGCTAGGAGTGAACTACAAAATTTCCATGGACTTTAGGGGTTTCAATTTCCCGGGTACTTTAATTCACATTTTTCACTAGAAAAAACCTTGGTGCACTTAAGCTTCATTCATCTCTTTTATAGCCCGGTTGTTATCCAATTAAAATGCGTTATCGGTATTGTTTCTTTTATTTGTGTGGTAAATAAGAACGGAGTTAGGTTGCATCTA

Coding sequence (CDS)

ATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATTGTGGAAGAAAGATTCGAGCAGTGGTTCAAGTTATCCAAAGCGCTGGTGGAATCGTTACGGGAAAATCTACGGATGAACAACAATTGACTATTCATGGCTTGCCCACAGTCCCTCACATGAACTTTGTAGAGGTAGTTGGTATTGCTGAGAGCAACAAGACCATCAAGGTTGAACACTGGACCGACTTTGGAACCACTTTTGATACTGAATCTTACAATCAGCTATGCCGACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAG

Protein sequence

MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNFVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI
Homology
[Close]
BLAST of PI0024763 vs. ExPASy Swiss-Prot
Match: Q6NLG7 (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-31
Identity = 62/106 (58.49%), Postives = 83/106 (78.30%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTS+PA FVNG LL  + G+K+RAV+QVI+S  G V GKSTD+QQ+ + G P  P   +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           +EV+GIAE++ TI+ E WT+FG +FD ++YN+LC+LANGEFR LFI
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]
BLAST of PI0024763 vs. ExPASy Swiss-Prot
Match: Q9LXK1 (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.5e-28
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHG-LPTVPHMN 60
           MDTS+P+ FVNG LL    G+K+R V+QV  S  G V GKSTD+ Q+ + G  P  P   
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           ++EV+GIAES+  I+ E WT+FG TFDT++YN+LC+LANGEF+ LFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]
BLAST of PI0024763 vs. ExPASy Swiss-Prot
Match: Q9SDK9 (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN=RPA3 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-26
Identity = 55/106 (51.89%), Postives = 73/106 (68.87%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTS PA FVNGE+L M  GR++R VVQ  +  GG++ G+STD  QLTI G    P  ++
Sbjct: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 61  VEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           VE++GIAE N+ I+ E  TDFG  FD   +N LC+LANG+ + LF+
Sbjct: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL 106

[Close]
BLAST of PI0024763 vs. ExPASy TrEMBL
Match: A0A1S3BGM8 (replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489388 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.0e-51
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQS GGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           VEVVGIA+SNKTI VEHWTDFGTTFDTESYNQLC+LANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]
BLAST of PI0024763 vs. ExPASy TrEMBL
Match: A0A5A7SU42 (Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001960 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.0e-51
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQS GGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           VEVVGIA+SNKTI VEHWTDFGTTFDTESYNQLC+LANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]
BLAST of PI0024763 vs. ExPASy TrEMBL
Match: A0A0A0KRF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.7e-51
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQS GGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           VEVVGIAESNKTIKVE WTDFGTTFDT SYNQLC+LANGEFRSLFI
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106

[Close]
BLAST of PI0024763 vs. ExPASy TrEMBL
Match: A0A6J1JC99 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111485454 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.6e-44
Identity = 89/106 (83.96%), Postives = 95/106 (89.62%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVF NGELL+MH GRKIRAVVQVIQS  G+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDDGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61  VEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           VEVVGIAE NK I VEHWTDFGT FD +SYNQLC+LANGEFRSLF+
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTIFDAQSYNQLCQLANGEFRSLFL 106

[Close]
BLAST of PI0024763 vs. ExPASy TrEMBL
Match: A0A6J1D9X1 (replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LOC111018714 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.8e-40
Identity = 82/106 (77.36%), Postives = 93/106 (87.74%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVN ELL +H GRKIRAV QV +S GG+VTGKSTDEQ+LT+HGLP VP MNF
Sbjct: 1   MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60

Query: 61  VEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           VEV+GIAESNK I VEH TDFG TFD +SYNQLC+LANGEF+S+F+
Sbjct: 61  VEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGEFKSIFL 106

[Close]
BLAST of PI0024763 vs. NCBI nr
Match: XP_008446755.1 (PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446756.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >KAA0034652.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa] >TYK09203.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 212.2 bits (539), Expect = 2.1e-51
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQS GGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           VEVVGIA+SNKTI VEHWTDFGTTFDTESYNQLC+LANGEFRSLFI
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRSLFI 106

[Close]
BLAST of PI0024763 vs. NCBI nr
Match: XP_004135037.1 (replication protein A 14 kDa subunit B [Cucumis sativus] >XP_011655832.1 replication protein A 14 kDa subunit B [Cucumis sativus] >XP_031740923.1 replication protein A 14 kDa subunit B [Cucumis sativus] >KGN52188.1 hypothetical protein Csa_008262 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 1.4e-50
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQS GGIVTGKSTDEQQLTIHGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 61  VEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           VEVVGIAESNKTIKVE WTDFGTTFDT SYNQLC+LANGEFRSLFI
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRSLFI 106

[Close]
BLAST of PI0024763 vs. NCBI nr
Match: XP_038893019.1 (replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 replication protein A 14 kDa subunit B-like [Benincasa hispida])

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQS GGIVTGKSTDEQQLTI GLPTVP MNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIRGLPTVPLMNF 60

Query: 61  VEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           VEVVGIAE+NK I VEHWTDFGTTFDT+SYNQLC+LANGEFRSLFI
Sbjct: 61  VEVVGIAEANKIINVEHWTDFGTTFDTQSYNQLCQLANGEFRSLFI 106

[Close]
BLAST of PI0024763 vs. NCBI nr
Match: XP_023539791.1 (replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVF NGELL++H GRKIRAVVQVIQS GG+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNVHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 61  VEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           VEVVGIAE NK I VEHWTDFGTTFD +SYNQLC+LANGEFRSLF+
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTTFDAQSYNQLCQLANGEFRSLFM 106

[Close]
BLAST of PI0024763 vs. NCBI nr
Match: KAG6601223.1 (Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 90/106 (84.91%), Postives = 96/106 (90.57%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTSNPAVF NGELL+MH GRKIRAVVQVIQS GG+VTGKSTDEQ LT+HGLPTVP MNF
Sbjct: 229 MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNF 288

Query: 61  VEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           VEVVGIAE NK I VEHWTDFG TFD +SYNQLC+LANGEFRSLF+
Sbjct: 289 VEVVGIAEGNKIINVEHWTDFGNTFDAQSYNQLCQLANGEFRSLFL 334

[Close]
BLAST of PI0024763 vs. TAIR 10
Match: AT4G18590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 136.3 bits (342), Expect = 1.4e-32
Identity = 62/106 (58.49%), Postives = 83/106 (78.30%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHGLPTVPHMNF 60
           MDTS+PA FVNG LL  + G+K+RAV+QVI+S  G V GKSTD+QQ+ + G P  P   +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           +EV+GIAE++ TI+ E WT+FG +FD ++YN+LC+LANGEFR LFI
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]
BLAST of PI0024763 vs. TAIR 10
Match: AT3G52630.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 125.2 bits (313), Expect = 3.2e-29
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHG-LPTVPHMN 60
           MDTS+P+ FVNG LL    G+K+R V+QV  S  G V GKSTD+ Q+ + G  P  P   
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           ++EV+GIAES+  I+ E WT+FG TFDT++YN+LC+LANGEF+ LFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]
BLAST of PI0024763 vs. TAIR 10
Match: AT3G52630.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 125.2 bits (313), Expect = 3.2e-29
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSAGGIVTGKSTDEQQLTIHG-LPTVPHMN 60
           MDTS+P+ FVNG LL    G+K+R V+QV  S  G V GKSTD+ Q+ + G  P  P   
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVVGIAESNKTIKVEHWTDFGTTFDTESYNQLCRLANGEFRSLFI 107
           ++EV+GIAES+  I+ E WT+FG TFDT++YN+LC+LANGEF+ LFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

The following BLAST results are available for this feature:
BLAST of PI0024763 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NLG72.0e-3158.49Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B ... [more]
Q9LXK14.5e-2855.14Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A ... [more]
Q9SDK91.9e-2651.89Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
BLAST of PI0024763 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BGM81.0e-5196.23replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489... [more]
A0A5A7SU421.0e-5196.23Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0KRF26.7e-5196.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1[more]
A0A6J1JC994.6e-4483.96replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1D9X11.8e-4077.36replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LO... [more]
BLAST of PI0024763 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008446755.12.1e-5196.23PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446... [more]
XP_004135037.11.4e-5096.23replication protein A 14 kDa subunit B [Cucumis sativus] >XP_011655832.1 replica... [more]
XP_038893019.13.8e-4892.45replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 ... [more]
XP_023539791.11.1e-4484.91replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo][more]
KAG6601223.11.1e-4484.91Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. s... [more]
BLAST of PI0024763 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G18590.11.4e-3258.49Nucleic acid-binding, OB-fold-like protein [more]
AT3G52630.13.2e-2955.14Nucleic acid-binding, OB-fold-like protein [more]
AT3G52630.23.2e-2955.14Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013970Replication factor A protein 3PFAMPF08661Rep_fac-A_3coord: 1..99
e-value: 3.6E-19
score: 69.0
NoneNo IPR availableGENE3D2.40.50.140coord: 2..106
e-value: 1.2E-18
score: 68.9
NoneNo IPR availablePANTHERPTHR47058:SF1NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEINcoord: 1..106
NoneNo IPR availablePANTHERPTHR47058REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATEDcoord: 1..106
NoneNo IPR availableCDDcd04479RPA3coord: 6..105
e-value: 8.92545E-24
score: 85.3925
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 6..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0024763.1PI0024763.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
cellular_component GO:0031981 nuclear lumen
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding