PI0024706 (gene) Melon (PI 482460) v1

Overview


Name	PI0024706
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr11: 22813778 .. 22814251 (+)
RNA-Seq Expression	PI0024706
Synteny	PI0024706

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCATAGTCTGTGGCAGAGGAAAAGCTATCTCTACCTCTTTAAAAGGCAGCCGCCTAACTTCTTCATTAAATTATGCACCCTCACCCATGAGTGCGGATCAATATACAATGGATTTAGGGTTTACTACGGTAACTCGATCTAAAGCAAGATTGTCCGGCATACAGATTGAATCTCCCACGGAATCTTCTACTCCACCTAGGCCTTCGGCCAATCTTGTCCGTCCTTCTGGCGGAGTCACTCAAATGAGGCCTCCTGCCTCTCCTCAATCAAATATGGAGTCATCTACTCCTCCTACGACGTATTCTCAGGCCGTCACTCCAGAAAAACGATTCATACCAAGGCCCGAGATCAAAACATATTTTCAAAAACAAGTTGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTCTAGATGAGACAGTTTCAAAAATCTTCCATGAGGCTTTAATTTCCTTCTAG

mRNA sequence

ATGAGCATAGTCTGTGGCAGAGGAAAAGCTATCTCTACCTCTTTAAAAGGCAGCCGCCTAACTTCTTCATTAAATTATGCACCCTCACCCATGAGTGCGGATCAATATACAATGGATTTAGGGTTTACTACGGTAACTCGATCTAAAGCAAGATTGTCCGGCATACAGATTGAATCTCCCACGGAATCTTCTACTCCACCTAGGCCTTCGGCCAATCTTGTCCGTCCTTCTGGCGGAGTCACTCAAATGAGGCCTCCTGCCTCTCCTCAATCAAATATGGAGTCATCTACTCCTCCTACGACGTATTCTCAGGCCGTCACTCCAGAAAAACGATTCATACCAAGGCCCGAGATCAAAACATATTTTCAAAAACAAGTTGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTCTAGATGAGACAGTTTCAAAAATCTTCCATGAGGCTTTAATTTCCTTCTAG

Coding sequence (CDS)

ATGAGCATAGTCTGTGGCAGAGGAAAAGCTATCTCTACCTCTTTAAAAGGCAGCCGCCTAACTTCTTCATTAAATTATGCACCCTCACCCATGAGTGCGGATCAATATACAATGGATTTAGGGTTTACTACGGTAACTCGATCTAAAGCAAGATTGTCCGGCATACAGATTGAATCTCCCACGGAATCTTCTACTCCACCTAGGCCTTCGGCCAATCTTGTCCGTCCTTCTGGCGGAGTCACTCAAATGAGGCCTCCTGCCTCTCCTCAATCAAATATGGAGTCATCTACTCCTCCTACGACGTATTCTCAGGCCGTCACTCCAGAAAAACGATTCATACCAAGGCCCGAGATCAAAACATATTTTCAAAAACAAGTTGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTCTAGATGAGACAGTTTCAAAAATCTTCCATGAGGCTTTAATTTCCTTCTAG

Protein sequence

MSIVCGRGKAISTSLKGSRLTSSLNYAPSPMSADQYTMDLGFTTVTRSKARLSGIQIESPTESSTPPRPSANLVRPSGGVTQMRPPASPQSNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTLDETVSKIFHEALISF

Homology

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BLAST of PI0024706 vs. ExPASy TrEMBL
Match: E5GCE6 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.4e-52
Identity = 113/144 (78.47%), Postives = 124/144 (86.11%), Query Frame = 0


Query: 7   RGKAISTSLKGSRLTSSLNYAPSPMSADQYTMDLGFTTVTRSKARLSGIQIESPTESSTP 66
           RG+  STS KG R +SS N  PSPMSA QYTMDLGFT VTRS++RLS I I SPTESSTP
Sbjct: 9   RGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESSTP 68

Query: 67  PRPSANLVRPSGGVTQMRPPASPQSNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQKQV 126
           PRPS NL+RPSGGV QMRPPASP SN ESSTPPTTYSQAVT +KRF+PRPEIK+YFQK +
Sbjct: 69  PRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEIKSYFQKSI 128

Query: 127 VIYDPIIEPEYQSLTLDETVSKIF 151
           V+YDPIIEPEYQSLTL+E VSKIF
Sbjct: 129 VVYDPIIEPEYQSLTLEEMVSKIF 152

[Close]

BLAST of PI0024706 vs. ExPASy TrEMBL
Match: A0A5D3E4J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00750 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.9e-52
Identity = 111/146 (76.03%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 7   RGKAISTSLKGSRLTSSLNYAPSPMSADQYTMDLGFTTVTRSKARLSGIQIESPTESSTP 66
           RG+  STS KG+RL+SS N APSPMSADQY MDLGFT VTRS++RLSGI I  PTESSTP
Sbjct: 9   RGRTNSTSSKGNRLSSSSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGIGFPTESSTP 68

Query: 67  PRPSANLVRPSGGVTQMRPPASPQSNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQKQV 126
           PRPSANL+RP G V QM+PPASP SN +SSTPPTTYSQAVTP+KRF+PRP+IK YFQK +
Sbjct: 69  PRPSANLIRPFGRVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPKIKFYFQKSI 128

Query: 127 VIYDPIIEPEYQSLTLDETVSKIFHE 153
           V+YDP IE EYQSLTL+E VSKIF E
Sbjct: 129 VVYDPTIELEYQSLTLEEAVSKIFPE 154

[Close]

BLAST of PI0024706 vs. ExPASy TrEMBL
Match: A0A5A7TM80 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00220 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.2e-51
Identity = 112/146 (76.71%), Postives = 123/146 (84.25%), Query Frame = 0


Query: 7   RGKAISTSLKGSRLTSSLNYAPSPMSADQYTMDLGFTTVTRSKARLSGIQIESPTESSTP 66
           RG+  STS KG+R  SS N APSP+SADQY MDLGFTTVTR  +R  GI I SPTESSTP
Sbjct: 9   RGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTP 68

Query: 67  PRPSANLVRPSGGVTQMRPPASPQSNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQKQV 126
           PRPS NL+RPS GV QMRPPASP SN ESSTPPTTYSQAVTP+KRF+PRPEIK+YFQK +
Sbjct: 69  PRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPEIKSYFQKPI 128

Query: 127 VIYDPIIEPEYQSLTLDETVSKIFHE 153
           V+YDPIIE EYQSLT +ETVSKIF E
Sbjct: 129 VVYDPIIELEYQSLTSEETVSKIFPE 154

[Close]

BLAST of PI0024706 vs. ExPASy TrEMBL
Match: A0A5D3BM67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00180 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.6e-45
Identity = 96/120 (80.00%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 31  MSADQYTMDLGFTTVTRSKARLSGIQIESPTESSTPPRPSANLVRPSGGVTQMRPPASPQ 90
           MSADQY MDLGFTTVTRS++R S I+IES TESSTPPRPSANL+RP GG  QMRPPASP 
Sbjct: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPS 60

Query: 91  SNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTLDETVSKIF 150
           SN ESSTPPTTYSQ VTP+KRF+PRPEIK+YFQK +V+YD IIEPEYQS+TL++TVSKIF
Sbjct: 61  SNRESSTPPTTYSQTVTPDKRFVPRPEIKSYFQKSIVVYDLIIEPEYQSITLEKTVSKIF 120

[Close]

BLAST of PI0024706 vs. ExPASy TrEMBL
Match: A0A5D3CKX1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00620 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.8e-44
Identity = 97/127 (76.38%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 7   RGKAISTSLKGSRLTSSLNYAPSPMSADQYTMDLGFTTVTRSKARLSGIQIESPTESSTP 66
           RG+  STS KG+R +SS N APSPMSADQY MDLGFTTV RS++R S I+ ESPTESSTP
Sbjct: 9   RGRTNSTSSKGNRPSSSSNSAPSPMSADQYEMDLGFTTVIRSRSRSSSIRTESPTESSTP 68

Query: 67  PRPSANLVRPSGGVTQMRPPASPQSNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQKQV 126
           PRP ANL+RPSG V QMRPPASP SN ESSTPPTTYSQAVTP+KRF+PRP+IK+YFQK +
Sbjct: 69  PRPLANLIRPSGRVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPKIKSYFQKPI 128

Query: 127 VIYDPII 134
           V+YDPII
Sbjct: 129 VVYDPII 135

[Close]

BLAST of PI0024706 vs. NCBI nr
Match: ADN34145.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 215.7 bits (548), Expect = 2.9e-52
Identity = 113/144 (78.47%), Postives = 124/144 (86.11%), Query Frame = 0


Query: 7   RGKAISTSLKGSRLTSSLNYAPSPMSADQYTMDLGFTTVTRSKARLSGIQIESPTESSTP 66
           RG+  STS KG R +SS N  PSPMSA QYTMDLGFT VTRS++RLS I I SPTESSTP
Sbjct: 9   RGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESSTP 68

Query: 67  PRPSANLVRPSGGVTQMRPPASPQSNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQKQV 126
           PRPS NL+RPSGGV QMRPPASP SN ESSTPPTTYSQAVT +KRF+PRPEIK+YFQK +
Sbjct: 69  PRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEIKSYFQKSI 128

Query: 127 VIYDPIIEPEYQSLTLDETVSKIF 151
           V+YDPIIEPEYQSLTL+E VSKIF
Sbjct: 129 VVYDPIIEPEYQSLTLEEMVSKIF 152

[Close]

BLAST of PI0024706 vs. NCBI nr
Match: KAA0026217.1 (hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK30739.1 hypothetical protein E5676_scaffold343G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-51
Identity = 111/146 (76.03%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 7   RGKAISTSLKGSRLTSSLNYAPSPMSADQYTMDLGFTTVTRSKARLSGIQIESPTESSTP 66
           RG+  STS KG+RL+SS N APSPMSADQY MDLGFT VTRS++RLSGI I  PTESSTP
Sbjct: 9   RGRTNSTSSKGNRLSSSSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGIGFPTESSTP 68

Query: 67  PRPSANLVRPSGGVTQMRPPASPQSNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQKQV 126
           PRPSANL+RP G V QM+PPASP SN +SSTPPTTYSQAVTP+KRF+PRP+IK YFQK +
Sbjct: 69  PRPSANLIRPFGRVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPKIKFYFQKSI 128

Query: 127 VIYDPIIEPEYQSLTLDETVSKIFHE 153
           V+YDP IE EYQSLTL+E VSKIF E
Sbjct: 129 VVYDPTIELEYQSLTLEEAVSKIFPE 154

[Close]

BLAST of PI0024706 vs. NCBI nr
Match: KAA0043136.1 (putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 212.6 bits (540), Expect = 2.4e-51
Identity = 112/146 (76.71%), Postives = 123/146 (84.25%), Query Frame = 0


Query: 7   RGKAISTSLKGSRLTSSLNYAPSPMSADQYTMDLGFTTVTRSKARLSGIQIESPTESSTP 66
           RG+  STS KG+R  SS N APSP+SADQY MDLGFTTVTR  +R  GI I SPTESSTP
Sbjct: 9   RGRTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTP 68

Query: 67  PRPSANLVRPSGGVTQMRPPASPQSNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQKQV 126
           PRPS NL+RPS GV QMRPPASP SN ESSTPPTTYSQAVTP+KRF+PRPEIK+YFQK +
Sbjct: 69  PRPSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPEIKSYFQKPI 128

Query: 127 VIYDPIIEPEYQSLTLDETVSKIFHE 153
           V+YDPIIE EYQSLT +ETVSKIF E
Sbjct: 129 VVYDPIIELEYQSLTSEETVSKIFPE 154

[Close]

BLAST of PI0024706 vs. NCBI nr
Match: KAE8646253.1 (hypothetical protein Csa_023844, partial [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.5e-48
Identity = 108/142 (76.06%), Postives = 122/142 (85.92%), Query Frame = 0


Query: 9   KAISTSLKGSRLTSSLNYAPSPMSADQYTMDLGFTTVTRSKARLSGIQIESPTESSTPPR 68
           +A STS +G+R +SS N APSPMSADQY MDLGFTTVTRS+AR S IQI SPT+SSTPPR
Sbjct: 1   RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR 60

Query: 69  PSANLVRPSGGVTQMRPPASPQSNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQKQVVI 128
            SANL+RPS  V QMRP ASP SN ESSTPPTTYSQ +TP+KRF+PR EIK+YFQK V++
Sbjct: 61  TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIV 120

Query: 129 YDPIIEPEYQSLTLDETVSKIF 151
           YD IIEPEYQSLTL+ETVSKIF
Sbjct: 121 YDSIIEPEYQSLTLEETVSKIF 142

[Close]

BLAST of PI0024706 vs. NCBI nr
Match: KAA0066421.1 (hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK00863.1 hypothetical protein E5676_scaffold602G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 3.4e-45
Identity = 96/120 (80.00%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 31  MSADQYTMDLGFTTVTRSKARLSGIQIESPTESSTPPRPSANLVRPSGGVTQMRPPASPQ 90
           MSADQY MDLGFTTVTRS++R S I+IES TESSTPPRPSANL+RP GG  QMRPPASP 
Sbjct: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPS 60

Query: 91  SNMESSTPPTTYSQAVTPEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTLDETVSKIF 150
           SN ESSTPPTTYSQ VTP+KRF+PRPEIK+YFQK +V+YD IIEPEYQS+TL++TVSKIF
Sbjct: 61  SNRESSTPPTTYSQTVTPDKRFVPRPEIKSYFQKSIVVYDLIIEPEYQSITLEKTVSKIF 120

The following BLAST results are available for this feature:

BLAST of PI0024706 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024706 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GCE6	1.4e-52	78.47	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3E4J4	6.9e-52	76.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TM80	1.2e-51	76.71	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3BM67	1.6e-45	80.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CKX1	1.8e-44	76.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0024706 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34145.1	2.9e-52	78.47	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAA0026217.1	1.4e-51	76.03	hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK3073...	[more]
KAA0043136.1	2.4e-51	76.71	putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative...	[more]
KAE8646253.1	1.5e-48	76.06	hypothetical protein Csa_023844, partial [Cucumis sativus]	[more]
KAA0066421.1	3.4e-45	80.00	hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK0086...	[more]

BLAST of PI0024706 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024706.1	PI0024706.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding