PI0024575 (gene) Melon (PI 482460) v1

Overview


Name	PI0024575
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr03: 16263620 .. 16265275 (+)
RNA-Seq Expression	PI0024575
Synteny	PI0024575

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCCCTTTTGATAAGCAATCTAACACTTTGATGAGGTATTTGACCTCCAAACCCAATCCATCCCGCGAAGTACCAAAAACCCAGAGTTTTGATGGTCCTGTATCAGAACTAACCCTTTCTCGCAGGAAGGCAAAAAGTAAAGAGTTGGGAAATTTTGCAGGAAGGCAACTTCGAATCCAAGGTCTTGACGCTGACTTGGAAGATGAAGATGTTGTCGATCTGATGGAACTCCATCACACGTCCATCTCTCCTCATCTACGCTTCCTTTCGGTCGTGTGTTCAAGTCCCAACCTCAACATTTTTTATTTTCCTTCTTCATTTGGTCGACCCAATCTGACGACCCACATGCAACCCAATTCATCATCTTCCCAAAATAAACTGCCAATTTGTAGTTTTTTGCCCTTACTTCCATTCTTGTAATAATTCTTTCATTTTACCTCAACAAAGAATTATTTTTGCTGAAAAAATGAGTTCTTTCTTCAACCCATCTTCAAGAAATCCTCTCATGGGCTAAGGTAAATTCTTGGGACTCTTAGGGCTTTTAAGTGCTATGCTTTCTTTGAGAAAATAATTTTCTTTTAGTCTTTTCAATTTTTATTTGATTGTTCTTGCTTCCCCTTGCATTTTCTTTGAAATTCAATGTAAAAAGTTAGGTTTTTCATCAATTTTACATTGAATTTCTTTGCAAAAATTCTAAAGTGCTGAACTTAATCTTTGAACTGCAATGGTTTAATATGTTCAATTTTTTGTTTGAAATTGTCTTTAATTTCTTGCATAATTTTGTTACATATGAATATTGAAGTGGGCAATAATTTTGTTAAGGGTAGTGGCTATCCCCTCCTTAGCAAATCTCGAATAGAATAACTTTTGTGTTAATTTGAACGTGTTTTGGTTTCTGAGATTGATCATGTTTTGCTTGAGATTAAATGATTTAATTGTAAAATTTTCATTCTTGCATATTCCTTAAAAGATTGATTAAATTTCATTTTCAATGATTAGAATCATAGCAATTGCCCAAGAAAAAGTCTCTTTACTAAAAATTGAGAGAGAAACTAATACTGATTTCCTCTTGTCACCAATCATCCTTTGCTTTTTTCTGTTTGAAATTGCTTCCAAGAACCTCCCCCCCCCCCCCCATTTCTAATATTGTCTTAGATCTTGAAGTTGCTAACTTTTTTGTTTATGATTTTTAAGTCTTAAAACTTTAAAGCGCTCTCTTGGGTTCAACACCTCTCTTCCACATACTACTCACATTGTACAATTTGGTAAGAAGGGTTAAAAATAATTTTGAGACCTAATGGAGGTGGTATCTCCAAACCCTTATCTTTTATCTAGGTTTCTTAAATTCTTGAATTCTTTTTAAACTAAATAGATCTTTTTTCTTGTATTCTTGTGTCAAAATCATCGTTTCTTTAGTATACAAAGCATATTCCTTTTTTTAATAATACGACTCACTTCAAATTAGCCCTTCTCATTGAGCCAGAAAGTCAGCAGTTTGTTAGATTTGCTCGACAGTTATTCCAATCAGTAGGATCAGTGCTTTGTGATCTAGAGAAGAAGTATGGCATAGAGCGACTTAAGGCCCTAGGTGCCCTAATTCTCGAGGGTTCTATAGATCAGGTCGATGTCGAGGCATGGTTGAGCTGCTAA

mRNA sequence

ATGGCCTCCCCTTTTGATAAGCAATCTAACACTTTGATGAGGTATTTGACCTCCAAACCCAATCCATCCCGCGAAGTACCAAAAACCCAGAGTTTTGATGGTCCTGTATCAGAACTAACCCTTTCTCGCAGGAAGGCAAAAAGTAAAGAGTTGGGAAATTTTGCAGGAAGGCAACTTCGAATCCAAGGTCTTGACGCTGACTTGGAAGATGAAGATGTTGTCGATCTGATGGAACTCCATCACACGTCCATCTCTCCTCATCTACGCTTCCTTTCGGTCGTGTGTTCAATTCTTTCTTCAACCCATCTTCAAGAAATCCTCTCATGGGCTAAGTATACAAAGCATATTCCTTTTTTTAATAATACGACTCACTTCAAATTAGCCCTTCTCATTGAGCCAGAAAGTCAGCAGTTTGTTAGATTTGCTCGACAGTTATTCCAATCAGTAGGATCAGTGCTTTGTGATCTAGAGAAGAAGTATGGCATAGAGCGACTTAAGGCCCTAGGTGCCCTAATTCTCGAGGGTTCTATAGATCAGGTCGATGTCGAGGCATGGTTGAGCTGCTAA

Coding sequence (CDS)

ATGGCCTCCCCTTTTGATAAGCAATCTAACACTTTGATGAGGTATTTGACCTCCAAACCCAATCCATCCCGCGAAGTACCAAAAACCCAGAGTTTTGATGGTCCTGTATCAGAACTAACCCTTTCTCGCAGGAAGGCAAAAAGTAAAGAGTTGGGAAATTTTGCAGGAAGGCAACTTCGAATCCAAGGTCTTGACGCTGACTTGGAAGATGAAGATGTTGTCGATCTGATGGAACTCCATCACACGTCCATCTCTCCTCATCTACGCTTCCTTTCGGTCGTGTGTTCAATTCTTTCTTCAACCCATCTTCAAGAAATCCTCTCATGGGCTAAGTATACAAAGCATATTCCTTTTTTTAATAATACGACTCACTTCAAATTAGCCCTTCTCATTGAGCCAGAAAGTCAGCAGTTTGTTAGATTTGCTCGACAGTTATTCCAATCAGTAGGATCAGTGCTTTGTGATCTAGAGAAGAAGTATGGCATAGAGCGACTTAAGGCCCTAGGTGCCCTAATTCTCGAGGGTTCTATAGATCAGGTCGATGTCGAGGCATGGTTGAGCTGCTAA

Protein sequence

MASPFDKQSNTLMRYLTSKPNPSREVPKTQSFDGPVSELTLSRRKAKSKELGNFAGRQLRIQGLDADLEDEDVVDLMELHHTSISPHLRFLSVVCSILSSTHLQEILSWAKYTKHIPFFNNTTHFKLALLIEPESQQFVRFARQLFQSVGSVLCDLEKKYGIERLKALGALILEGSIDQVDVEAWLSC

Homology

[Close]

BLAST of PI0024575 vs. ExPASy TrEMBL
Match: A0A5A7T7M3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2612G00090 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-05
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 116 IPFFNNTTHFKLALLIEPESQQFVRFARQLFQSVGSVLCDLEKKYGIERLKALGALILEG 175
           +P  N   +  L    E E +Q+ +FA++  +++G    D EKKYGI+R + LGA + EG
Sbjct: 53  LPRNNLRRNLALQYQAETEEKQYHKFAQRFMRTMGPTSGDPEKKYGIKRHRNLGATVFEG 112

Query: 176 SIDQVDVEAWLSC 189
           S D  D E+WL C
Sbjct: 113 SRDPADSESWLHC 125

[Close]

BLAST of PI0024575 vs. ExPASy TrEMBL
Match: A0A5A7SKG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00920 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-05
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 134 ESQQFVRFARQLFQSVGSVLCDLEKKYGIERLKALGALILEGSIDQVDVEAWLS 188
           E + F + A++L   V     DLEKKYGIER+KALGA   +G++D V+VEAWL+
Sbjct: 109 EERIFNKIAQRLADGVRLAQADLEKKYGIERMKALGATPFKGTVDSVEVEAWLT 162

[Close]

BLAST of PI0024575 vs. ExPASy TrEMBL
Match: A0A5A7SRT9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold478G00220 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.7e-04
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 135 SQQFVRFARQLFQSVGSVLCDLEKKYGIERLKALGALILEGSIDQVDVEAWLS 188
           ++QFVR A+++ +       D EK YGIERLK LGA + EGSID  D E WL+
Sbjct: 24  NEQFVRTAQEIERPEKGEPSDPEKAYGIERLKKLGATVFEGSIDPADAENWLN 76

[Close]

BLAST of PI0024575 vs. ExPASy TrEMBL
Match: A0A5A7V5X4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001720 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.7e-04
Identity = 24/54 (44.44%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 134 ESQQFVRFARQLFQSVGSVLCDLEKKYGIERLKALGALILEGSIDQVDVEAWLS 188
           E + + +  ++L +S+ SV    +KK+ IERLK+LGA++ EGS D +DVE WL+
Sbjct: 2   EERGYQQMVQKLVESLSSVQARSKKKHNIERLKSLGAVVFEGSTDPIDVEVWLN 55

[Close]

BLAST of PI0024575 vs. ExPASy TrEMBL
Match: A0A5D3BPE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00320 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.7e-04
Identity = 24/54 (44.44%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 134 ESQQFVRFARQLFQSVGSVLCDLEKKYGIERLKALGALILEGSIDQVDVEAWLS 188
           E + + +  ++L +S+ SV    +KK+ IERLK+LGA++ EGS D +DVE WL+
Sbjct: 2   EERGYQQMVQKLVESLSSVQARSKKKHNIERLKSLGAVVFEGSTDPIDVEVWLN 55

[Close]

BLAST of PI0024575 vs. NCBI nr
Match: WP_217833179.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-05
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 131 IEPESQQFVRFARQLFQSVGSVLCDLEKKYGIERLKALGALILEGSIDQVDVEA 185
           +  E Q F R A++L  S+GSV  D EKKY IERLKALGA   EG++D V+ EA
Sbjct: 13  VNVEEQLFTRIAQRLAASIGSVESDPEKKYSIERLKALGATTFEGTVDPVEAEA 66

[Close]

BLAST of PI0024575 vs. NCBI nr
Match: KAA0038868.1 (uncharacterized protein E6C27_scaffold1170G00200 [Cucumis melo var. makuwa] >TYJ96005.1 uncharacterized protein E5676_scaffold2612G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-05
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 116 IPFFNNTTHFKLALLIEPESQQFVRFARQLFQSVGSVLCDLEKKYGIERLKALGALILEG 175
           +P  N   +  L    E E +Q+ +FA++  +++G    D EKKYGI+R + LGA + EG
Sbjct: 53  LPRNNLRRNLALQYQAETEEKQYHKFAQRFMRTMGPTSGDPEKKYGIKRHRNLGATVFEG 112

Query: 176 SIDQVDVEAWLSC 189
           S D  D E+WL C
Sbjct: 113 SRDPADSESWLHC 125

[Close]

BLAST of PI0024575 vs. NCBI nr
Match: KAA0025769.1 (hypothetical protein E6C27_scaffold34G00120 [Cucumis melo var. makuwa] >TYK09684.1 hypothetical protein E5676_scaffold447G00920 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-05
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 134 ESQQFVRFARQLFQSVGSVLCDLEKKYGIERLKALGALILEGSIDQVDVEAWLS 188
           E + F + A++L   V     DLEKKYGIER+KALGA   +G++D V+VEAWL+
Sbjct: 109 EERIFNKIAQRLADGVRLAQADLEKKYGIERMKALGATPFKGTVDSVEVEAWLT 162

[Close]

BLAST of PI0024575 vs. NCBI nr
Match: XP_038896416.1 (uncharacterized protein LOC120084680 [Benincasa hispida])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 134 ESQQFVRFARQLFQSVGSVLCDLEKKYGIERLKALGALILEGSIDQVDVEAWL 187
           E + F R  ++L  SVGS+  D EKK+GIERLKALGA   +G+ D +D E WL
Sbjct: 2   EDRVFDRITQRLAASVGSIQNDPEKKFGIERLKALGATTFDGTTDPLDAEIWL 54

[Close]

BLAST of PI0024575 vs. NCBI nr
Match: XP_038887090.1 (uncharacterized protein LOC120077268 [Benincasa hispida])

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-04
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 140 RFARQLFQSVGSVLCDLEKKYGIERLKALGALILEGSIDQVDVEAWL 187
           + A++L  SVGSV  D+EKKYGIER KALGA+  EG+ +  + E WL
Sbjct: 25  KIAQRLATSVGSVRADIEKKYGIERFKALGAVTFEGTANPAEAELWL 71

The following BLAST results are available for this feature:

BLAST of PI0024575 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024575 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T7M3	2.0e-05	39.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SKG0	2.0e-05	51.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SRT9	3.7e-04	50.94	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold47...	[more]
A0A5A7V5X4	3.7e-04	44.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BPE1	3.7e-04	44.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0024575 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833179.1	1.4e-05	55.56	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
KAA0038868.1	4.1e-05	39.73	uncharacterized protein E6C27_scaffold1170G00200 [Cucumis melo var. makuwa] >TYJ...	[more]
KAA0025769.1	4.1e-05	51.85	hypothetical protein E6C27_scaffold34G00120 [Cucumis melo var. makuwa] >TYK09684...	[more]
XP_038896416.1	1.2e-04	52.83	uncharacterized protein LOC120084680 [Benincasa hispida]	[more]
XP_038887090.1	2.0e-04	55.32	uncharacterized protein LOC120077268 [Benincasa hispida]	[more]

BLAST of PI0024575 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024575.1	PI0024575.1	mRNA