PI0024542 (gene) Melon (PI 482460) v1

Overview
NamePI0024542
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Descriptionclassical arabinogalactan protein 1-like
Locationchr01: 1725677 .. 1726230 (-)
RNA-Seq ExpressionPI0024542
SyntenyPI0024542
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTCCCAACTTCACAAAACTCTCTCTCTCTCCATCCATCAATGGCTTCCCTACGCATCACACTTATGGCACTAACGGCGCTGTTCTTGATCACCTCCACCCTCGCCCAGTCTCCGGCGCCGTCGCCGAAGAAATCACCCCACCCACACTCTCCCTCTTCCCATTCCCCTAACCTTTCTCACAAATCGGTGCCTTCACCTTCGCCTTCACTGTCGCCTTCTCCAGTCGCTTCTTCTCCACTCCCTCCGGCCAATTCTCCTGCACCTGCCGCCAATGATGCTATTACCAATACTTTCGCCGTCGCGGCTTCTCTCTTGGCCGCCATCTCCGCCGCTGCTTTCCTCTTCTAGATCTCCACTTTACTCCGCTCCTTCCTCCACTTTCTCTTCCACAGATTTCTCCTTTCTATGTGCTAATTACATTTCTGTCTCCCTTTTATTTTAATTTTTTTCTTGCTGCATAATTTCTAAGGTTTGGCGGAGTTTTGAGTTTGTATAACATTCTCTTTTCTATTTGAATTTATCATATAAATTATATTCATACTTATTCTAAT

mRNA sequence

CAATTCCCAACTTCACAAAACTCTCTCTCTCTCCATCCATCAATGGCTTCCCTACGCATCACACTTATGGCACTAACGGCGCTGTTCTTGATCACCTCCACCCTCGCCCAGTCTCCGGCGCCGTCGCCGAAGAAATCACCCCACCCACACTCTCCCTCTTCCCATTCCCCTAACCTTTCTCACAAATCGGTGCCTTCACCTTCGCCTTCACTGTCGCCTTCTCCAGTCGCTTCTTCTCCACTCCCTCCGGCCAATTCTCCTGCACCTGCCGCCAATGATGCTATTACCAATACTTTCGCCGTCGCGGCTTCTCTCTTGGCCGCCATCTCCGCCGCTGCTTTCCTCTTCTAGATCTCCACTTTACTCCGCTCCTTCCTCCACTTTCTCTTCCACAGATTTCTCCTTTCTATGTGCTAATTACATTTCTGTCTCCCTTTTATTTTAATTTTTTTCTTGCTGCATAATTTCTAAGGTTTGGCGGAGTTTTGAGTTTGTATAACATTCTCTTTTCTATTTGAATTTATCATATAAATTATATTCATACTTATTCTAAT

Coding sequence (CDS)

ATGGCTTCCCTACGCATCACACTTATGGCACTAACGGCGCTGTTCTTGATCACCTCCACCCTCGCCCAGTCTCCGGCGCCGTCGCCGAAGAAATCACCCCACCCACACTCTCCCTCTTCCCATTCCCCTAACCTTTCTCACAAATCGGTGCCTTCACCTTCGCCTTCACTGTCGCCTTCTCCAGTCGCTTCTTCTCCACTCCCTCCGGCCAATTCTCCTGCACCTGCCGCCAATGATGCTATTACCAATACTTTCGCCGTCGCGGCTTCTCTCTTGGCCGCCATCTCCGCCGCTGCTTTCCTCTTCTAG

Protein sequence

MASLRITLMALTALFLITSTLAQSPAPSPKKSPHPHSPSSHSPNLSHKSVPSPSPSLSPSPVASSPLPPANSPAPAANDAITNTFAVAASLLAAISAAAFLF
Homology
[Close]
BLAST of PI0024542 vs. ExPASy TrEMBL
Match: A0A0A0K7F2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064070 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-24
Identity = 87/107 (81.31%), Postives = 90/107 (84.11%), Query Frame = 0 

Query: 1   MASLRITLMALTALFLITSTLAQSPAPSPKKS--PHPHSPSSH-SPNLSHKSVPSPSPSL 60
           MASL ITLMALTALFLITST AQSPAPSPKKS  PH HSPS H SP LSHKSV SPSPS 
Sbjct: 1   MASLPITLMALTALFLITSTFAQSPAPSPKKSHHPHSHSPSPHNSPILSHKSVSSPSPSP 60

Query: 61  SPSPVASSPLPPANSPAPAA--NDAITNTFAVAASLLAAISAAAFLF 103
           SPSPVASS LPPAN+ APA   NDAITNTFAV+ASL  A+SAAAFLF
Sbjct: 61  SPSPVASSSLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF 107

[Close]
BLAST of PI0024542 vs. ExPASy TrEMBL
Match: A0A6J1CJM5 (classical arabinogalactan protein 1-like OS=Momordica charantia OX=3673 GN=LOC111012223 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.1e-05
Identity = 55/108 (50.93%), Postives = 66/108 (61.11%), Query Frame = 0 

Query: 1   MASLRITLMALTALFLITSTLAQSPAPSPKKSPHPHSPS--SHSPNLSHKSVPSPS---- 60
           MAS+R T++AL AL LITS  AQ    SPKK  H  SPS  + SP +S KS PSP+    
Sbjct: 1   MASVRFTVLALMALILITSAAAQ----SPKKHSHAASPSPAADSPRVSPKSAPSPATGKH 60

Query: 61  -----PSLSPSPV---ASSPLPPANSPAPAANDAITNTFAVAASLLAA 95
                PS SPSP    +S   PPA++PA A N A +N+FAVA SL AA
Sbjct: 61  SLAGPPSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLFAA 104

[Close]
BLAST of PI0024542 vs. NCBI nr
Match: XP_011659718.1 (classical arabinogalactan protein 10 [Cucumis sativus] >KGN43746.1 hypothetical protein Csa_017283 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-24
Identity = 87/107 (81.31%), Postives = 90/107 (84.11%), Query Frame = 0 

Query: 1   MASLRITLMALTALFLITSTLAQSPAPSPKKS--PHPHSPSSH-SPNLSHKSVPSPSPSL 60
           MASL ITLMALTALFLITST AQSPAPSPKKS  PH HSPS H SP LSHKSV SPSPS 
Sbjct: 1   MASLPITLMALTALFLITSTFAQSPAPSPKKSHHPHSHSPSPHNSPILSHKSVSSPSPSP 60

Query: 61  SPSPVASSPLPPANSPAPAA--NDAITNTFAVAASLLAAISAAAFLF 103
           SPSPVASS LPPAN+ APA   NDAITNTFAV+ASL  A+SAAAFLF
Sbjct: 61  SPSPVASSSLPPANALAPALLFNDAITNTFAVSASLFTAVSAAAFLF 107

[Close]
BLAST of PI0024542 vs. NCBI nr
Match: XP_022141985.1 (classical arabinogalactan protein 1-like [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-04
Identity = 55/108 (50.93%), Postives = 66/108 (61.11%), Query Frame = 0 

Query: 1   MASLRITLMALTALFLITSTLAQSPAPSPKKSPHPHSPS--SHSPNLSHKSVPSPS---- 60
           MAS+R T++AL AL LITS  AQ    SPKK  H  SPS  + SP +S KS PSP+    
Sbjct: 1   MASVRFTVLALMALILITSAAAQ----SPKKHSHAASPSPAADSPRVSPKSAPSPATGKH 60

Query: 61  -----PSLSPSPV---ASSPLPPANSPAPAANDAITNTFAVAASLLAA 95
                PS SPSP    +S   PPA++PA A N A +N+FAVA SL AA
Sbjct: 61  SLAGPPSSSPSPALPPSSISSPPADAPAAAGNTAASNSFAVAGSLFAA 104

The following BLAST results are available for this feature:
BLAST of PI0024542 vs.
Match NameE-valueIdentityDescription
BLAST of PI0024542 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7F21.0e-2481.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064070 PE=4 SV=1[more]
A0A6J1CJM59.1e-0550.93classical arabinogalactan protein 1-like OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of PI0024542 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659718.12.1e-2481.31classical arabinogalactan protein 10 [Cucumis sativus] >KGN43746.1 hypothetical ... [more]
XP_022141985.11.9e-0450.93classical arabinogalactan protein 1-like [Momordica charantia][more]
BLAST of PI0024542 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0024542.1PI0024542.1mRNA