PI0024453 (gene) Melon (PI 482460) v1

Overview


Name	PI0024453
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr01: 14532652 .. 14533273 (+)
RNA-Seq Expression	PI0024453
Synteny	PI0024453

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACAGATGGGCAAGTCCCACGTAAACCGATTGGTAGAGATTGAAGAGCAGATGCTCTACCTGGTGGAAGTTTTGGACGCCGTCCGCTTCTTGGAAAACCGGATTCAAGAAATTTTTGAGAAAGTTGACGTTATTATGCGGTAACTGGTCGCCTCGACAGATTACCTGTAAGTGAGCCATTTACAATAGTTGACACTCTAAAGGCAAAAGCTGCAAAAACTGGTAACTACGAGCGTGGGGACAGTCAACGGGCTCTGTTGCCCACACAGAAGAACGGGTTGGCAAGCTAGATAGCTCCCAAAAGTCGATTGTTGAGATGATAAATGGCATGTCAAAGGATTTTTGTGCCGCTCTTGACGTCGTCGTCAGGAATGAGATCATAGATGTGAGCACAAGGGTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAGCTGGAGGAGCAATACAAGTTAACAGAGTGAAGATCCCTAAACTCAAACCCTTCTGTGGGGCAAGAGATGCAAAAGCCTTGGAGAACTTCATATTTGATCTCGAACAATACTTCCAGGCCACGAACACAGTTGCAAAAGAAGCGAAAGTGACAATAGCAACGATGTATTTAGTAAAGGGATGA

mRNA sequence

ATGAAACAGATGGGCAAGTCCCACGTAAACCGATTGGTAGAGATTGAAGAGCAGATGCTCTACCTGGTGGAAGTTTTGGACGCCGTCCGCTTCTTGGAAAACCGGATTCAAGAAATTTTTGAGAAAGTTGACGTTATTATGCGATTACCTGTAAGTGAGCCATTTACAATAGTTGACACTCTAAAGGCAAAAGCTGCAAAAACTGAAGAACGGGTTGGCAAGCTAGATAGCTCCCAAAAGTCGATTGTTGAGATGATAAATGGCATGTCAAAGGATTTTTGTGCCGCTCTTGACGTCGTCGTCAGGAATGAGATCATAGATGTGAGCACAAGGGTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAGCTGGAGGAGCAATACAAGTTAACAGAGTGAAGATCCCTAAACTCAAACCCTTCTGTGGGGCAAGAGATGCAAAAGCCTTGGAGAACTTCATATTTGATCTCGAACAATACTTCCAGGCCACGAACACAGTTGCAAAAGAAGCGAAAGTGACAATAGCAACGATGTATTTAGTAAAGGGATGA

Coding sequence (CDS)

ATGAAACAGATGGGCAAGTCCCACGTAAACCGATTGGTAGAGATTGAAGAGCAGATGCTCTACCTGGTGGAAGTTTTGGACGCCGTCCGCTTCTTGGAAAACCGGATTCAAGAAATTTTTGAGAAAGTTGACGTTATTATGCGATTACCTGTAAGTGAGCCATTTACAATAGTTGACACTCTAAAGGCAAAAGCTGCAAAAACTGAAGAACGGGTTGGCAAGCTAGATAGCTCCCAAAAGTCGATTGTTGAGATGATAAATGGCATGTCAAAGGATTTTTGTGCCGCTCTTGACGTCGTCGTCAGGAATGAGATCATAGATGTGAGCACAAGGGTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAGCTGGAGGAGCAATACAAGTTAACAGAGTGAAGATCCCTAAACTCAAACCCTTCTGTGGGGCAAGAGATGCAAAAGCCTTGGAGAACTTCATATTTGATCTCGAACAATACTTCCAGGCCACGAACACAGTTGCAAAAGAAGCGAAAGTGACAATAGCAACGATGTATTTAGTAAAGGGATGA

Protein sequence

MKQMGKSHVNRLVEIEEQMLYLVEVLDAVRFLENRIQEIFEKVDVIMRLPVSEPFTIVDTLKAKAAKTEERVGKLDSSQKSIVEMINGMSKDFCAALDVVVRNEIIDVSTRVNLTMRAMANQAPAGGAIQVNRVKIPKLKPFCGARDAKALENFIFDLEQYFQATNTVAKEAKVTIATMYLVKG

Homology

[Close]

BLAST of PI0024453 vs. ExPASy TrEMBL
Match: A0A5A7TU46 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001680 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 9.5e-53
Identity = 123/202 (60.89%), Postives = 151/202 (74.75%), Query Frame = 0


Query: 5   GKSHVNRLVEIEEQMLYLVEVLDAVRFLENRIQEIFEKVDVIMRL-------PVSEPFTI 64
           GK+  +RLVE+EEQMLYLVEV D++R+LE+R++EIFEK + I  +       P+ E  T 
Sbjct: 8   GKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEIFEKTNTIDAVAGRVEGFPIQELMTR 67

Query: 65  VDTLK------------------AKAAKTEERVGKLDSSQKSIVEMINGMSKDFCAALDV 124
           VD L+                     A  EERV +LDSSQK+++EMINGMS+DF A LD 
Sbjct: 68  VDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD- 127

Query: 125 VVRNEIIDVSTRVNLTMRAMANQAPAGGAIQVNRVKIPKLKPFCGARDAKALENFIFDLE 182
           VVRNEI DV+ R++LTMRAMANQAPAGGAI V+RVKIP+ KPFCGARDAKALEN+IFDLE
Sbjct: 128 VVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLE 187

[Close]

BLAST of PI0024453 vs. ExPASy TrEMBL
Match: A0A5A7SZS9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00960 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.1e-52
Identity = 122/202 (60.40%), Postives = 150/202 (74.26%), Query Frame = 0


Query: 5   GKSHVNRLVEIEEQMLYLVEVLDAVRFLENRIQEIFEKVDVIMRL-------PVSEPFTI 64
           GK+  +RLVE+EEQMLYLVEV D++R+LE+R+ EIFEK + I  +       P+ E  T 
Sbjct: 8   GKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEIFEKTNTIDAVAGRVEGFPIQELMTR 67

Query: 65  VDTLK------------------AKAAKTEERVGKLDSSQKSIVEMINGMSKDFCAALDV 124
           VD L+                     A  EERV +LDSSQK+++EMINGMS+DF A LD 
Sbjct: 68  VDALETTIKIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD- 127

Query: 125 VVRNEIIDVSTRVNLTMRAMANQAPAGGAIQVNRVKIPKLKPFCGARDAKALENFIFDLE 182
           VVRNEI+DV+ R++LTMRAMAN APAGGAI V+RVKIP+ KPFCGARDAKALEN+IFDLE
Sbjct: 128 VVRNEIVDVNARLSLTMRAMANHAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLE 187

[Close]

BLAST of PI0024453 vs. ExPASy TrEMBL
Match: A0A5A7SKW3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005100 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.8e-52
Identity = 122/202 (60.40%), Postives = 150/202 (74.26%), Query Frame = 0


Query: 5   GKSHVNRLVEIEEQMLYLVEVLDAVRFLENRIQEIFEKVDVIMRL-------PVSEPFTI 64
           GK+  +RLVE+EEQMLYLVEV D++R+LE+R++EIF+K + I  +       P+ E  T 
Sbjct: 8   GKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEIFQKTNTIDAVTGRVEGFPIQELMTR 67

Query: 65  VDTLK------------------AKAAKTEERVGKLDSSQKSIVEMINGMSKDFCAALDV 124
           VD L+                     A  EERV +LDSSQK+++EMINGMS+DF A LD 
Sbjct: 68  VDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD- 127

Query: 125 VVRNEIIDVSTRVNLTMRAMANQAPAGGAIQVNRVKIPKLKPFCGARDAKALENFIFDLE 182
           VVRNEI DV+ R+NLTMRAMANQAPAGGAI V+RVKIP+ KPFCGARDAKALEN+IFDLE
Sbjct: 128 VVRNEIADVNARLNLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLE 187

[Close]

BLAST of PI0024453 vs. ExPASy TrEMBL
Match: A0A5A7VFC8 (Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00350 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 6.2e-52
Identity = 122/202 (60.40%), Postives = 147/202 (72.77%), Query Frame = 0


Query: 5   GKSHVNRLVEIEEQMLYLVEVLDAVRFLENRIQEIFEKVDV-------IMRLPVSEPFTI 64
           GKS  +RLVEIEEQMLYLVEV D++R+LE+R+ EI EK+D        I  LP+ E    
Sbjct: 8   GKSQKDRLVEIEEQMLYLVEVPDSIRYLESRLDEISEKIDTIDAVAGRIEGLPIQELLAR 67

Query: 65  VDTLKAK------------------AAKTEERVGKLDSSQKSIVEMINGMSKDFCAALDV 124
           V+TL+A                    A  EERV +LDSSQK+++EMINGMS+DF   LD 
Sbjct: 68  VETLEANTNVGRTINYERGESSSGFTAHMEERVSELDSSQKALLEMINGMSEDFRVTLD- 127

Query: 125 VVRNEIIDVSTRVNLTMRAMANQAPAGGAIQVNRVKIPKLKPFCGARDAKALENFIFDLE 182
           VVRN+I DV+ R+NL MRAMANQAPAGG I V++VKIP+ KPFCGARDAK LEN+IFDLE
Sbjct: 128 VVRNKIADVNARLNLMMRAMANQAPAGGVISVSKVKIPEPKPFCGARDAKTLENYIFDLE 187

[Close]

BLAST of PI0024453 vs. ExPASy TrEMBL
Match: A0A5A7SW95 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001980 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 6.2e-52
Identity = 122/202 (60.40%), Postives = 151/202 (74.75%), Query Frame = 0


Query: 5   GKSHVNRLVEIEEQMLYLVEVLDAVRFLENRIQEIFEKVDVIMRL-------PVSEPFTI 64
           GK+  +RLVE+EEQMLYLVEV D++R+LE+R++EI EK ++I  +       P+ E  T 
Sbjct: 8   GKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNMIDAVAGRVEGFPIQELMTR 67

Query: 65  VDTLK------------------AKAAKTEERVGKLDSSQKSIVEMINGMSKDFCAALDV 124
           VD L+                     A  EERV +LDSSQK+++EMINGMS+DF A LD 
Sbjct: 68  VDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD- 127

Query: 125 VVRNEIIDVSTRVNLTMRAMANQAPAGGAIQVNRVKIPKLKPFCGARDAKALENFIFDLE 182
           VVRNEI DV+ R++LTMRAMANQAPAGGAI V+RVKIP+ KPFCGARDAKALEN+IFDLE
Sbjct: 128 VVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLE 187

[Close]

BLAST of PI0024453 vs. NCBI nr
Match: KAA0046982.1 (uncharacterized protein E6C27_scaffold230G001680 [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 2.0e-52
Identity = 123/202 (60.89%), Postives = 151/202 (74.75%), Query Frame = 0


Query: 5   GKSHVNRLVEIEEQMLYLVEVLDAVRFLENRIQEIFEKVDVIMRL-------PVSEPFTI 64
           GK+  +RLVE+EEQMLYLVEV D++R+LE+R++EIFEK + I  +       P+ E  T 
Sbjct: 8   GKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEIFEKTNTIDAVAGRVEGFPIQELMTR 67

Query: 65  VDTLK------------------AKAAKTEERVGKLDSSQKSIVEMINGMSKDFCAALDV 124
           VD L+                     A  EERV +LDSSQK+++EMINGMS+DF A LD 
Sbjct: 68  VDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD- 127

Query: 125 VVRNEIIDVSTRVNLTMRAMANQAPAGGAIQVNRVKIPKLKPFCGARDAKALENFIFDLE 182
           VVRNEI DV+ R++LTMRAMANQAPAGGAI V+RVKIP+ KPFCGARDAKALEN+IFDLE
Sbjct: 128 VVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLE 187

[Close]

BLAST of PI0024453 vs. NCBI nr
Match: KAA0035456.1 (uncharacterized protein E6C27_scaffold285G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 4.4e-52
Identity = 122/202 (60.40%), Postives = 150/202 (74.26%), Query Frame = 0


Query: 5   GKSHVNRLVEIEEQMLYLVEVLDAVRFLENRIQEIFEKVDVIMRL-------PVSEPFTI 64
           GK+  +RLVE+EEQMLYLVEV D++R+LE+R+ EIFEK + I  +       P+ E  T 
Sbjct: 8   GKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEIFEKTNTIDAVAGRVEGFPIQELMTR 67

Query: 65  VDTLK------------------AKAAKTEERVGKLDSSQKSIVEMINGMSKDFCAALDV 124
           VD L+                     A  EERV +LDSSQK+++EMINGMS+DF A LD 
Sbjct: 68  VDALETTIKIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD- 127

Query: 125 VVRNEIIDVSTRVNLTMRAMANQAPAGGAIQVNRVKIPKLKPFCGARDAKALENFIFDLE 182
           VVRNEI+DV+ R++LTMRAMAN APAGGAI V+RVKIP+ KPFCGARDAKALEN+IFDLE
Sbjct: 128 VVRNEIVDVNARLSLTMRAMANHAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLE 187

[Close]

BLAST of PI0024453 vs. NCBI nr
Match: KAA0031722.1 (uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa])

HSP 1 Score: 214.9 bits (546), Expect = 5.7e-52
Identity = 122/202 (60.40%), Postives = 150/202 (74.26%), Query Frame = 0


Query: 5   GKSHVNRLVEIEEQMLYLVEVLDAVRFLENRIQEIFEKVDVIMRL-------PVSEPFTI 64
           GK+  +RLVE+EEQMLYLVEV D++R+LE+R++EIF+K + I  +       P+ E  T 
Sbjct: 8   GKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEIFQKTNTIDAVTGRVEGFPIQELMTR 67

Query: 65  VDTLK------------------AKAAKTEERVGKLDSSQKSIVEMINGMSKDFCAALDV 124
           VD L+                     A  EERV +LDSSQK+++EMINGMS+DF A LD 
Sbjct: 68  VDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD- 127

Query: 125 VVRNEIIDVSTRVNLTMRAMANQAPAGGAIQVNRVKIPKLKPFCGARDAKALENFIFDLE 182
           VVRNEI DV+ R+NLTMRAMANQAPAGGAI V+RVKIP+ KPFCGARDAKALEN+IFDLE
Sbjct: 128 VVRNEIADVNARLNLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLE 187

[Close]

BLAST of PI0024453 vs. NCBI nr
Match: KAA0035532.1 (uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa])

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-51
Identity = 122/202 (60.40%), Postives = 151/202 (74.75%), Query Frame = 0


Query: 5   GKSHVNRLVEIEEQMLYLVEVLDAVRFLENRIQEIFEKVDVIMRL-------PVSEPFTI 64
           GK+  +RLVE+EEQMLYLVEV D++R+LE+R++EI EK ++I  +       P+ E  T 
Sbjct: 8   GKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNMIDAVAGRVEGFPIQELMTR 67

Query: 65  VDTLK------------------AKAAKTEERVGKLDSSQKSIVEMINGMSKDFCAALDV 124
           VD L+                     A  EERV +LDSSQK+++EMINGMS+DF A LD 
Sbjct: 68  VDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD- 127

Query: 125 VVRNEIIDVSTRVNLTMRAMANQAPAGGAIQVNRVKIPKLKPFCGARDAKALENFIFDLE 182
           VVRNEI DV+ R++LTMRAMANQAPAGGAI V+RVKIP+ KPFCGARDAKALEN+IFDLE
Sbjct: 128 VVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDLE 187

[Close]

BLAST of PI0024453 vs. NCBI nr
Match: TYK03099.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-51
Identity = 122/203 (60.10%), Postives = 151/203 (74.38%), Query Frame = 0


Query: 4   MGKSHVNRLVEIEEQMLYLVEVLDAVRFLENRIQEIFEKVDVIMRL-------PVSEPFT 63
           +GK+  +RLVE+EEQMLYLVEV D++R+LE+R++EI EK + I  +       P+ E  T
Sbjct: 7   LGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFPIQELMT 66

Query: 64  IVDTLK------------------AKAAKTEERVGKLDSSQKSIVEMINGMSKDFCAALD 123
            VD L+                     A  EERV +LDSSQK+++EMINGMS+DF A LD
Sbjct: 67  RVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSEDFRATLD 126

Query: 124 VVVRNEIIDVSTRVNLTMRAMANQAPAGGAIQVNRVKIPKLKPFCGARDAKALENFIFDL 182
            VVRNEI DV+ R++LTMRAMANQAPAGGAI V+RVKIP+ KPFCGARDAKALEN+IFDL
Sbjct: 127 -VVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALENYIFDL 186

The following BLAST results are available for this feature:

BLAST of PI0024453 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024453 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TU46	9.5e-53	60.89	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SZS9	2.1e-52	60.40	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SKW3	2.8e-52	60.40	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7VFC8	6.2e-52	60.40	Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7SW95	6.2e-52	60.40	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of PI0024453 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046982.1	2.0e-52	60.89	uncharacterized protein E6C27_scaffold230G001680 [Cucumis melo var. makuwa]	[more]
KAA0035456.1	4.4e-52	60.40	uncharacterized protein E6C27_scaffold285G00960 [Cucumis melo var. makuwa]	[more]
KAA0031722.1	5.7e-52	60.40	uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa]	[more]
KAA0035532.1	1.3e-51	60.40	uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa]	[more]
TYK03099.1	1.3e-51	60.10	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of PI0024453 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024453.1	PI0024453.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0008233	peptidase activity