PI0024393 (gene) Melon (PI 482460) v1

Overview


Name	PI0024393
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DUF4283 domain-containing protein
Location	chr12: 7990050 .. 7991693 (-)
RNA-Seq Expression	PI0024393
Synteny	PI0024393

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTGAAATATTACTCTTCTGATTCTGATACAACGAGGAGAACTTATGCAAGTGTTCTCTCAGACAACATTTCCTCCAACTTAAGCGAAGCAGGTTTCTCTTCTGACTCGGATAGATTTTTGCAAGAGAAAAAAAGAAAGGAAAAGAGTCTTGCATACTTTGAGAAAGACACTCAGATAAACTTAAAGAATGTTGTTGTCATTACAAGGAGCTGTTTTCACGATGAATGGCACAAAATCAAACACAACCTCAGGAAGCAAATTGAAGTCAACTTCTCTCTCAAACCTTTCCACCCAGAAAAAGCCATTCTAACCTTCCAAGATAAGGAGCATGCAAAGCTTCTTTGCAGCAATAATGGAAACAGAGGATGGTCTACAGTGGGAAAGTTCTTTGTCAAATTTGAGAAATGGTCAGAAACTACACATTCCCTACATAGACTCATTCCGAGCTATGGTGGCTAGACCTCTTTCAGAGGAGTTCCTCTTCATCTATGGAAATATGATACGTTCAAAAAAATTGGAGCTGCTTGTGGAGGATTTGTTGCCGTAGCAAAAGTTACAATGGAGAAGAAGGAATTGCTGGAAGCCAAGATAAAGATTAAATACAATTACACAGGCTTTATCCCAGCAAATGTTGGCATCACAGATGAGAGTGGTGAACACTTTGTGATACAGACTGTCTGTAAATCTGACAGCAAGTGGCTTGTAGAAAGAAACATAAATATCCATGGCACCTTCAAAAGACAAGCTGCGGTAAGTTTCAACGAGTTTAACCTAGAAGAGGAGATGTATAACTTCGCCGGAAATGTTGCAATTCCACCGAAAAATTGTGAATCTACAAAATCTGAAGTATTAAAGACAGAAATGACAGAAAATCTTGCAAAAACCAAGATTCCACACTCTGCCTATCATGAAAAGTCTGACAAAACCACCAAAATAACAGAAAAACGGCTTGACAAAAGGAAGCAATTAATGGCAGATGATGATGATACTGACAGCCAGCTAACAAGGTTTAGCTAAAAAAGAAAGGTGTCCTTCACCTCTTCTAAAAACAAAACCTTCTTCTTCAATCTCAATTTTGCCCCAGCAAAGCATCTTTGCATTAAAAGCCCTGCGGAAAAAAACAATAATGGCACACTTGAGGACCCACCAATGCACAAGAGAAAATTTGTGAAAAAATATTACAGAATCAAGGGCAAATACAACCAAATCTTTGACTCAGGTAAAGAATTAAATGAAGGATTAAATCTTTAGGTGGATTTAGGCCATCTGTCAACCATAGAAGATGACCAAAAAATGGAAATTGTTGACAGCCCAAAGGAATTAAAAGAAGGATCAAGTCCTGAAGGTGGAAATATTCTGCTGGCACATGCCTCACAGTCCCAAACTGAATTGATCAAAGACAACTCCGATCCAATGAACACAAGTGATGAAGAGGATTTCAGAATTACCAAAGTCAAAGAAAGTAGTGTGGAAGAAGAAGAAAAATTCAAGAAACATCTGATCATCTGGCTAAAAGAAAATAATTTAAAACTTGCTCCTTCTATAAATCAAAGCTTGCCAAGCTCCTCAAATAGTGAACAGATAAGAATCAGTGGAGGAGAAGAACAAAGATCCTCGGGAAGCAATGTTGTTAAATGA

mRNA sequence

ATGGAGGTGAAATATTACTCTTCTGATTCTGATACAACGAGGAGAACTTATGCAAGTGTTCTCTCAGACAACATTTCCTCCAACTTAAGCGAAGCAGGTTTCTCTTCTGACTCGGATAGATTTTTGCAAGAGAAAAAAAGAAAGGAAAAGAGTCTTGCATACTTTGAGAAAGACACTCAGATAAACTTAAAGAATGTTGTTGTCATTACAAGGAGCTGTTTTCACGATGAATGGCACAAAATCAAACACAACCTCAGGAAGCAAATTGAAGTCAACTTCTCTCTCAAACCTTTCCACCCAGAAAAAGCCATTCTAACCTTCCAAGATAAGGAGCATGCAAAGCTTCTTTGCAGCAATAATGGAAACAGAGGATGGTCTACAGTGGGAAAGTTCTTTGTCAAATTTGAGAAATGCAAGTGGCTTGTAGAAAGAAACATAAATATCCATGGCACCTTCAAAAGACAAGCTGCGGTAAGTTTCAACGAGTTTAACCTAGAAGAGGAGATGTATAACTTCGCCGGAAATGTTGCAATTCCACCGAAAAATTGTGAATCTACAAAATCTGAAGTATTAAAGACAGAAATGACAGAAAATCTTGCAAAAACCAAGATTCCACACTCTGCCTATCATGAAAAGTCTGACAAAACCACCAAAATAACAGAAAAACGGCTTGACAAAAGGAAGCAATTAATGGCAGATGATGATGATACTGACAGCCAGCTAACAAGCCCTGCGGAAAAAAACAATAATGGCACACTTGAGGACCCACCAATGCACAAGAGAAAATTTGTGAAAAAATATTACAGAATCAAGGGCAAATACAACCAAATCTTTGACTCAGGCCATCTGTCAACCATAGAAGATGACCAAAAAATGGAAATTGTTGACAGCCCAAAGGAATTAAAAGAAGGATCAAGTCCTGAAGGTGGAAATATTCTGCTGGCACATGCCTCACAGTCCCAAACTGAATTGATCAAAGACAACTCCGATCCAATGAACACAAGTGATGAAGAGGATTTCAGAATTACCAAAGTCAAAGAAAGTAGTGTGGAAGAAGAAGAAAAATTCAAGAAACATCTGATCATCTGGCTAAAAGAAAATAATTTAAAACTTGCTCCTTCTATAAATCAAAGCTTGCCAAGCTCCTCAAATAGTGAACAGATAAGAATCAGTGGAGGAGAAGAACAAAGATCCTCGGGAAGCAATGTTGTTAAATGA

Coding sequence (CDS)

ATGGAGGTGAAATATTACTCTTCTGATTCTGATACAACGAGGAGAACTTATGCAAGTGTTCTCTCAGACAACATTTCCTCCAACTTAAGCGAAGCAGGTTTCTCTTCTGACTCGGATAGATTTTTGCAAGAGAAAAAAAGAAAGGAAAAGAGTCTTGCATACTTTGAGAAAGACACTCAGATAAACTTAAAGAATGTTGTTGTCATTACAAGGAGCTGTTTTCACGATGAATGGCACAAAATCAAACACAACCTCAGGAAGCAAATTGAAGTCAACTTCTCTCTCAAACCTTTCCACCCAGAAAAAGCCATTCTAACCTTCCAAGATAAGGAGCATGCAAAGCTTCTTTGCAGCAATAATGGAAACAGAGGATGGTCTACAGTGGGAAAGTTCTTTGTCAAATTTGAGAAATGCAAGTGGCTTGTAGAAAGAAACATAAATATCCATGGCACCTTCAAAAGACAAGCTGCGGTAAGTTTCAACGAGTTTAACCTAGAAGAGGAGATGTATAACTTCGCCGGAAATGTTGCAATTCCACCGAAAAATTGTGAATCTACAAAATCTGAAGTATTAAAGACAGAAATGACAGAAAATCTTGCAAAAACCAAGATTCCACACTCTGCCTATCATGAAAAGTCTGACAAAACCACCAAAATAACAGAAAAACGGCTTGACAAAAGGAAGCAATTAATGGCAGATGATGATGATACTGACAGCCAGCTAACAAGCCCTGCGGAAAAAAACAATAATGGCACACTTGAGGACCCACCAATGCACAAGAGAAAATTTGTGAAAAAATATTACAGAATCAAGGGCAAATACAACCAAATCTTTGACTCAGGCCATCTGTCAACCATAGAAGATGACCAAAAAATGGAAATTGTTGACAGCCCAAAGGAATTAAAAGAAGGATCAAGTCCTGAAGGTGGAAATATTCTGCTGGCACATGCCTCACAGTCCCAAACTGAATTGATCAAAGACAACTCCGATCCAATGAACACAAGTGATGAAGAGGATTTCAGAATTACCAAAGTCAAAGAAAGTAGTGTGGAAGAAGAAGAAAAATTCAAGAAACATCTGATCATCTGGCTAAAAGAAAATAATTTAAAACTTGCTCCTTCTATAAATCAAAGCTTGCCAAGCTCCTCAAATAGTGAACAGATAAGAATCAGTGGAGGAGAAGAACAAAGATCCTCGGGAAGCAATGTTGTTAAATGA

Protein sequence

MEVKYYSSDSDTTRRTYASVLSDNISSNLSEAGFSSDSDRFLQEKKRKEKSLAYFEKDTQINLKNVVVITRSCFHDEWHKIKHNLRKQIEVNFSLKPFHPEKAILTFQDKEHAKLLCSNNGNRGWSTVGKFFVKFEKCKWLVERNINIHGTFKRQAAVSFNEFNLEEEMYNFAGNVAIPPKNCESTKSEVLKTEMTENLAKTKIPHSAYHEKSDKTTKITEKRLDKRKQLMADDDDTDSQLTSPAEKNNNGTLEDPPMHKRKFVKKYYRIKGKYNQIFDSGHLSTIEDDQKMEIVDSPKELKEGSSPEGGNILLAHASQSQTELIKDNSDPMNTSDEEDFRITKVKESSVEEEEKFKKHLIIWLKENNLKLAPSINQSLPSSSNSEQIRISGGEEQRSSGSNVVK

Homology

[Close]

BLAST of PI0024393 vs. ExPASy TrEMBL
Match: A0A5D3DFM9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00270 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-27
Identity = 145/509 (28.49%), Postives = 222/509 (43.61%), Query Frame = 0


Query: 6   YSSDSDTTRRTYASVLSDNISSNLSEAGFSSDSDRFLQEKKRKEKSLAYFEKDTQI--NL 65
           +SSDSD++R++YA  LSD+ S   ++  + S SD    +   +  S   F+  T    + 
Sbjct: 112 FSSDSDSSRKSYAKALSDS-SEEENKKRYKSTSD----DSSSRRSSTIGFKPFTLSGDSF 171

Query: 66  KNVVVITRSCFHDEWHKIKHNLRKQIEVNFSLKPFHPEKAILTFQDKEHAKLLCSNNGNR 125
           +  V++TR CFHD+W++I  +LRKQ E+ FS KPF  +KA L F + +HAKLLCSN    
Sbjct: 172 EKTVIVTRRCFHDDWNRIMFSLRKQSEIAFSYKPFQADKAFL-FLNPDHAKLLCSNKSAN 231

Query: 126 GWSTVGKF------FVKFE----------------------------------------- 185
           GWSTVG +      FV+ +                                         
Sbjct: 232 GWSTVGNYQRDSASFVELQYFSKHWFGLWRIPCVVKETMQMEKLIDAKIKVRYNYIGFVP 291

Query: 186 ---------------------KCKWLVERNINIHGTFKRQAAVSFNEFNLEEEMYNFAGN 245
                                K +WLVERN+ +HGTFK +AA  F++ N   E Y + G 
Sbjct: 292 ASVLITDNQGENFILTTVPPTKARWLVERNVRVHGTFKTKAADEFDQHNPLAEAYTYNGF 351

Query: 246 VAIPPKNCESTKS----EVLKTE--MTENLAKTKIPHSAYHEKSDKTTKITEKRLDKRKQ 305
            AIP    EST++      L ++     N  + K  +S+  E      +++E+R +K K 
Sbjct: 352 QAIP---LESTRTRGDYSFLNSDKHSVSNHTQAKKNNSSESEYDPFDQQLSERRKEKGKV 411

Query: 306 LMADDDDTD-----------------------SQLTSPAEKNNNG------TLEDP---- 365
           ++  +D                             +S  EKN  G      T+ DP    
Sbjct: 412 ILLINDQDHGHYSKRSKRISNRKVSFLSPGCIQSYSSNTEKNIEGKSLEISTINDPFEKR 471

Query: 366 --PMHKRKFVKKYYRIKGKYNQIFDSGHLSTI---EDDQKMEI-VD----SPKELKEGSS 384
             P  K K +K  YRIK   ++  +   LS     E  ++M + VD    SP +    S 
Sbjct: 472 WSPRQKSK-IKLTYRIKNDPHEFNEDQKLSLKEYGEGSKQMNLSVDMGPISPLDSMLQSE 531

[Close]

BLAST of PI0024393 vs. ExPASy TrEMBL
Match: A0A5D3BKT8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005570 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-23
Identity = 138/538 (25.65%), Postives = 220/538 (40.89%), Query Frame = 0


Query: 6   YSSDSDTTRRTYASVLSDNISSNLSEAGFSSDSDRFLQEKKRKEKSLAYFEKDTQIN-LK 65
           +SSDSD++R++YA VLSD+ S + ++  + + SD       R+  S+ +       N  +
Sbjct: 125 FSSDSDSSRKSYAKVLSDS-SEDDNKKRYKATSD---DSSSRRSSSIGFKPFTLSGNSFE 184

Query: 66  NVVVITRSCFHDEWHKIKHNLRKQIEVNFSLKPFHPEKAILTFQDKEHAKLLCSNNGNRG 125
             V+ITR CFHD+W++I  +LRKQ E+ FS KPF  +KAIL F + +HAKLLCSN G  G
Sbjct: 185 KTVIITRRCFHDDWNRIMFSLRKQSEIAFSYKPFQADKAIL-FLNSDHAKLLCSNKGANG 244

Query: 126 WSTVGKFFVKFE------------------------------------------------ 185
           WSTVG + VKFE                                                
Sbjct: 245 WSTVGNYQVKFESWDSNLHSFHSVIPSYGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDV 304

Query: 186 -----------------------------------------------KCKWLVERNINIH 245
                                                          + +WLVERN+ +H
Sbjct: 305 AKETMQMDKLIDAKIKVRYNYTGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVH 364

Query: 246 GTFKRQAAVSFNEFNLEEEMYNFAGNVAIPPKNCESTKSEVLKTEMTENLA---KTKIPH 305
           G+F+ +AA  F++ N   E Y + G  AIPP+   +     +      +++   + K  +
Sbjct: 365 GSFRTKAADEFDQHNHLAETYTYNGFQAIPPEPTRTHGDYSIHNSDKHSISYHTQAKKNN 424

Query: 306 SAYHEKSDKTTKITEKRLDKRKQLMADDDDTDSQLTSPAEKNNN---------------- 365
           S+  E      +++++R +K K ++  +D      +  +++ +N                
Sbjct: 425 SSESEYDPFDQQLSDRRKEKGKAILIINDQNHGHYSKRSKRISNRKVSFLSPGGIQSNSS 484

Query: 366 -------------GTLED------PPMHKRKFVKKYYRIKGKYNQIFDSGHLS---TIED 385
                         T+ D       P  K K  K  YRIK    +  +  +LS   T E 
Sbjct: 485 NTEINTKGKSLEISTINDQFEKRWSPRQKTK-TKLTYRIKKDPQESTEDHNLSLKETGEG 544

[Close]

BLAST of PI0024393 vs. ExPASy TrEMBL
Match: A0A5A7TEP0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00440 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.5e-23
Identity = 135/508 (26.57%), Postives = 206/508 (40.55%), Query Frame = 0


Query: 7   SSDSDTTRRTYASVLS--DNISSNLSEAGFSSDSDRFLQEKK---RKEKSLAYFEKDTQI 66
           S+DS++ R+TYA V+S   +  S+ S+A  +S   RFL   K   RKE      E+   I
Sbjct: 159 STDSESPRKTYAEVVSSFSSSESDYSKAKNTSSLKRFLPAMKSEIRKE------ERKNDI 218

Query: 67  NLKNVVVITRSCFHDEWHKIKHNLRKQI---EVNFSLKPFHPEKAILTFQDKEHAKLLCS 126
           + +  ++++R CFHD+W KI   LR+Q    E  F   PFH +KA+L  +DK+ AKLLC 
Sbjct: 219 DWEKTIILSRRCFHDDWDKIIDRLREQTDKKESCFCYVPFHADKALLFIKDKDLAKLLCK 278

Query: 127 NNGNRGWSTVGKFFVKFEK----------------------------------------C 186
           NN   GW+TVG F+VKFEK                                        C
Sbjct: 279 NN---GWTTVGPFYVKFEKWSKSVHADTKVIPSYGGWTRFRGIPLHIWNLNTFIHIGEAC 338

Query: 187 -------------------------------------------------------KWLVE 246
                                                                  +WL E
Sbjct: 339 GGFIDAAPESVNKIELTEALIKVKENYTGFLPAFIQIHDEEGHVFIIQIVTHPEGRWLRE 398

Query: 247 RNINIHGTFKRQAAVSFNEFNLEEEMYNFAGNVAIPPK--NCESTK--SEVLKTEMTENL 306
           RN +IHG+FK+ AA +FNEFN   E + F  N+A+  K    ES+K  S+ +  +  +  
Sbjct: 399 RNPSIHGSFKKTAAENFNEFNPYAEQFTFRRNLAVISKLDLSESSKNGSKQMNADRKKGP 458

Query: 307 AKT----------KIPHSAYHEKSDKTTKITEKRLDKRKQLMADDDDTDSQLTSPAEKNN 366
            KT           + ++    KS + T  T+K++ + K    + +      TS   +  
Sbjct: 459 TKTIKKFNKTLGSPMSYAKMEAKSKRPTPSTKKKVYRVKSQSTEGE------TSQTNRQK 518

Query: 367 NGTLEDPPMHKRKFVKKYYRIKGKYNQIFDSGHLSTIEDDQKMEIVDSPKELKEGSSPEG 394
           +    DP                ++  + D GH+S + D              + S PE 
Sbjct: 519 DKGKVDP---------------NEFKLVVDLGHISPLSD-------------TDFSCPES 578

[Close]

BLAST of PI0024393 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.9e-23
Identity = 138/537 (25.70%), Postives = 218/537 (40.60%), Query Frame = 0


Query: 6   YSSDSDTTRRTYASVLSDNISSNLSEAGFSSDSDRFLQEKKRKEKSLAYFEKDTQIN-LK 65
           +SSDSD++R++YA VLSD+ S + ++  + + SD       R+  S+ +       N  +
Sbjct: 125 FSSDSDSSRKSYAKVLSDS-SEDDNKKRYKATSD---DSSSRRSSSIGFKPFTLSGNSFE 184

Query: 66  NVVVITRSCFHDEWHKIKHNLRKQIEVNFSLKPFHPEKAILTFQDKEHAKLLCSNNGNRG 125
             V+ITR CFHD+W++I  +LRKQ E+ FS KPF  +KAIL F + +HAKLLCSN G  G
Sbjct: 185 KTVIITRRCFHDDWNRIMFSLRKQSEIAFSYKPFQADKAIL-FLNPDHAKLLCSNKGANG 244

Query: 126 WSTVGKFFVKFE------------------------------------------------ 185
           WSTVG + VKFE                                                
Sbjct: 245 WSTVGNYQVKFESWDSNLHSFHSVIPSYGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDV 304

Query: 186 -----------------------------------------------KCKWLVERNINIH 245
                                                          + +WLVERN+ +H
Sbjct: 305 AKETMQMDKLIDAKIKVRYNYIGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVH 364

Query: 246 GTFKRQAAVSFNEFNLEEEMYNFAGNVAIPPKNCESTKSEVLKTEMTENLA---KTKIPH 305
           G+F+ +AA  F++ N   E Y + G  AIPP+   +     +      +++   + K  +
Sbjct: 365 GSFRTKAADEFDQHNHLAETYTYNGFQAIPPEPTRTHGDYSIHNSDKHSISYHTQAKKNN 424

Query: 306 SAYHEKSDKTTKITEKRLDKRKQLMADDDDTDSQLTSPAEKNNN---------------- 365
           S+  E      +++++R +K K ++  +D      +  +++ +N                
Sbjct: 425 SSESEYDPFDQQLSDRRKEKGKAILIINDQDHGHYSKRSKRISNRKVSFLSPGGIQSNSS 484

Query: 366 -------------GTLED------PPMHKRKFVKKYYRIKGKYNQIFDSGHLS---TIED 384
                         T+ D       P  K K  K  YRIK    +  +   LS   T E 
Sbjct: 485 NTEINTKGKSLEISTINDQFEKRWSPRQKTK-TKLTYRIKKDPQESTEDHKLSLKETGEG 544

[Close]

BLAST of PI0024393 vs. ExPASy TrEMBL
Match: A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.9e-23
Identity = 138/537 (25.70%), Postives = 218/537 (40.60%), Query Frame = 0


Query: 6   YSSDSDTTRRTYASVLSDNISSNLSEAGFSSDSDRFLQEKKRKEKSLAYFEKDTQIN-LK 65
           +SSDSD++R++YA VLSD+ S + ++  + + SD       R+  S+ +       N  +
Sbjct: 125 FSSDSDSSRKSYAKVLSDS-SEDDNKKRYKATSD---DSSSRRSSSIGFKPFTLSGNSFE 184

Query: 66  NVVVITRSCFHDEWHKIKHNLRKQIEVNFSLKPFHPEKAILTFQDKEHAKLLCSNNGNRG 125
             V+ITR CFHD+W++I  +LRKQ E+ FS KPF  +KAIL F + +HAKLLCSN G  G
Sbjct: 185 KTVIITRRCFHDDWNRIMFSLRKQSEIAFSYKPFQADKAIL-FLNPDHAKLLCSNKGANG 244

Query: 126 WSTVGKFFVKFE------------------------------------------------ 185
           WSTVG + VKFE                                                
Sbjct: 245 WSTVGNYQVKFESWDSNLHSFHSVIPSYGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDV 304

Query: 186 -----------------------------------------------KCKWLVERNINIH 245
                                                          + +WLVERN+ +H
Sbjct: 305 AKETMQMDKLIDAKIKVRYNYIGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVH 364

Query: 246 GTFKRQAAVSFNEFNLEEEMYNFAGNVAIPPKNCESTKSEVLKTEMTENLA---KTKIPH 305
           G+F+ +AA  F++ N   E Y + G  AIPP+   +     +      +++   + K  +
Sbjct: 365 GSFRTKAADEFDQHNHLAETYTYNGFQAIPPEPTRTHGDYSIHNSDKHSISYHTQAKKNN 424

Query: 306 SAYHEKSDKTTKITEKRLDKRKQLMADDDDTDSQLTSPAEKNNN---------------- 365
           S+  E      +++++R +K K ++  +D      +  +++ +N                
Sbjct: 425 SSESEYDPFDQQLSDRRKEKGKAILIINDQDHGHYSKRSKRISNRKVSFLSPGGIQSNSS 484

Query: 366 -------------GTLED------PPMHKRKFVKKYYRIKGKYNQIFDSGHLS---TIED 384
                         T+ D       P  K K  K  YRIK    +  +   LS   T E 
Sbjct: 485 NTEINTKGKSLEISTINDQFEKRWSPRQKTK-TKLTYRIKKDPQESTEDHKLSLKETGEG 544

[Close]

BLAST of PI0024393 vs. NCBI nr
Match: KAA0035247.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK22402.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 2.8e-27
Identity = 145/509 (28.49%), Postives = 222/509 (43.61%), Query Frame = 0


Query: 6   YSSDSDTTRRTYASVLSDNISSNLSEAGFSSDSDRFLQEKKRKEKSLAYFEKDTQI--NL 65
           +SSDSD++R++YA  LSD+ S   ++  + S SD    +   +  S   F+  T    + 
Sbjct: 112 FSSDSDSSRKSYAKALSDS-SEEENKKRYKSTSD----DSSSRRSSTIGFKPFTLSGDSF 171

Query: 66  KNVVVITRSCFHDEWHKIKHNLRKQIEVNFSLKPFHPEKAILTFQDKEHAKLLCSNNGNR 125
           +  V++TR CFHD+W++I  +LRKQ E+ FS KPF  +KA L F + +HAKLLCSN    
Sbjct: 172 EKTVIVTRRCFHDDWNRIMFSLRKQSEIAFSYKPFQADKAFL-FLNPDHAKLLCSNKSAN 231

Query: 126 GWSTVGKF------FVKFE----------------------------------------- 185
           GWSTVG +      FV+ +                                         
Sbjct: 232 GWSTVGNYQRDSASFVELQYFSKHWFGLWRIPCVVKETMQMEKLIDAKIKVRYNYIGFVP 291

Query: 186 ---------------------KCKWLVERNINIHGTFKRQAAVSFNEFNLEEEMYNFAGN 245
                                K +WLVERN+ +HGTFK +AA  F++ N   E Y + G 
Sbjct: 292 ASVLITDNQGENFILTTVPPTKARWLVERNVRVHGTFKTKAADEFDQHNPLAEAYTYNGF 351

Query: 246 VAIPPKNCESTKS----EVLKTE--MTENLAKTKIPHSAYHEKSDKTTKITEKRLDKRKQ 305
            AIP    EST++      L ++     N  + K  +S+  E      +++E+R +K K 
Sbjct: 352 QAIP---LESTRTRGDYSFLNSDKHSVSNHTQAKKNNSSESEYDPFDQQLSERRKEKGKV 411

Query: 306 LMADDDDTD-----------------------SQLTSPAEKNNNG------TLEDP---- 365
           ++  +D                             +S  EKN  G      T+ DP    
Sbjct: 412 ILLINDQDHGHYSKRSKRISNRKVSFLSPGCIQSYSSNTEKNIEGKSLEISTINDPFEKR 471

Query: 366 --PMHKRKFVKKYYRIKGKYNQIFDSGHLSTI---EDDQKMEI-VD----SPKELKEGSS 384
             P  K K +K  YRIK   ++  +   LS     E  ++M + VD    SP +    S 
Sbjct: 472 WSPRQKSK-IKLTYRIKNDPHEFNEDQKLSLKEYGEGSKQMNLSVDMGPISPLDSMLQSE 531

[Close]

BLAST of PI0024393 vs. NCBI nr
Match: KAA0056838.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99341.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 4.2e-23
Identity = 138/538 (25.65%), Postives = 220/538 (40.89%), Query Frame = 0


Query: 6   YSSDSDTTRRTYASVLSDNISSNLSEAGFSSDSDRFLQEKKRKEKSLAYFEKDTQIN-LK 65
           +SSDSD++R++YA VLSD+ S + ++  + + SD       R+  S+ +       N  +
Sbjct: 125 FSSDSDSSRKSYAKVLSDS-SEDDNKKRYKATSD---DSSSRRSSSIGFKPFTLSGNSFE 184

Query: 66  NVVVITRSCFHDEWHKIKHNLRKQIEVNFSLKPFHPEKAILTFQDKEHAKLLCSNNGNRG 125
             V+ITR CFHD+W++I  +LRKQ E+ FS KPF  +KAIL F + +HAKLLCSN G  G
Sbjct: 185 KTVIITRRCFHDDWNRIMFSLRKQSEIAFSYKPFQADKAIL-FLNSDHAKLLCSNKGANG 244

Query: 126 WSTVGKFFVKFE------------------------------------------------ 185
           WSTVG + VKFE                                                
Sbjct: 245 WSTVGNYQVKFESWDSNLHSFHSVIPSYGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDV 304

Query: 186 -----------------------------------------------KCKWLVERNINIH 245
                                                          + +WLVERN+ +H
Sbjct: 305 AKETMQMDKLIDAKIKVRYNYTGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVH 364

Query: 246 GTFKRQAAVSFNEFNLEEEMYNFAGNVAIPPKNCESTKSEVLKTEMTENLA---KTKIPH 305
           G+F+ +AA  F++ N   E Y + G  AIPP+   +     +      +++   + K  +
Sbjct: 365 GSFRTKAADEFDQHNHLAETYTYNGFQAIPPEPTRTHGDYSIHNSDKHSISYHTQAKKNN 424

Query: 306 SAYHEKSDKTTKITEKRLDKRKQLMADDDDTDSQLTSPAEKNNN---------------- 365
           S+  E      +++++R +K K ++  +D      +  +++ +N                
Sbjct: 425 SSESEYDPFDQQLSDRRKEKGKAILIINDQNHGHYSKRSKRISNRKVSFLSPGGIQSNSS 484

Query: 366 -------------GTLED------PPMHKRKFVKKYYRIKGKYNQIFDSGHLS---TIED 385
                         T+ D       P  K K  K  YRIK    +  +  +LS   T E 
Sbjct: 485 NTEINTKGKSLEISTINDQFEKRWSPRQKTK-TKLTYRIKKDPQESTEDHNLSLKETGEG 544

[Close]

BLAST of PI0024393 vs. NCBI nr
Match: KAA0041398.1 (hypothetical protein E6C27_scaffold206G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 7.2e-23
Identity = 135/508 (26.57%), Postives = 206/508 (40.55%), Query Frame = 0


Query: 7   SSDSDTTRRTYASVLS--DNISSNLSEAGFSSDSDRFLQEKK---RKEKSLAYFEKDTQI 66
           S+DS++ R+TYA V+S   +  S+ S+A  +S   RFL   K   RKE      E+   I
Sbjct: 159 STDSESPRKTYAEVVSSFSSSESDYSKAKNTSSLKRFLPAMKSEIRKE------ERKNDI 218

Query: 67  NLKNVVVITRSCFHDEWHKIKHNLRKQI---EVNFSLKPFHPEKAILTFQDKEHAKLLCS 126
           + +  ++++R CFHD+W KI   LR+Q    E  F   PFH +KA+L  +DK+ AKLLC 
Sbjct: 219 DWEKTIILSRRCFHDDWDKIIDRLREQTDKKESCFCYVPFHADKALLFIKDKDLAKLLCK 278

Query: 127 NNGNRGWSTVGKFFVKFEK----------------------------------------C 186
           NN   GW+TVG F+VKFEK                                        C
Sbjct: 279 NN---GWTTVGPFYVKFEKWSKSVHADTKVIPSYGGWTRFRGIPLHIWNLNTFIHIGEAC 338

Query: 187 -------------------------------------------------------KWLVE 246
                                                                  +WL E
Sbjct: 339 GGFIDAAPESVNKIELTEALIKVKENYTGFLPAFIQIHDEEGHVFIIQIVTHPEGRWLRE 398

Query: 247 RNINIHGTFKRQAAVSFNEFNLEEEMYNFAGNVAIPPK--NCESTK--SEVLKTEMTENL 306
           RN +IHG+FK+ AA +FNEFN   E + F  N+A+  K    ES+K  S+ +  +  +  
Sbjct: 399 RNPSIHGSFKKTAAENFNEFNPYAEQFTFRRNLAVISKLDLSESSKNGSKQMNADRKKGP 458

Query: 307 AKT----------KIPHSAYHEKSDKTTKITEKRLDKRKQLMADDDDTDSQLTSPAEKNN 366
            KT           + ++    KS + T  T+K++ + K    + +      TS   +  
Sbjct: 459 TKTIKKFNKTLGSPMSYAKMEAKSKRPTPSTKKKVYRVKSQSTEGE------TSQTNRQK 518

Query: 367 NGTLEDPPMHKRKFVKKYYRIKGKYNQIFDSGHLSTIEDDQKMEIVDSPKELKEGSSPEG 394
           +    DP                ++  + D GH+S + D              + S PE 
Sbjct: 519 DKGKVDP---------------NEFKLVVDLGHISPLSD-------------TDFSCPES 578

[Close]

BLAST of PI0024393 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-22
Identity = 138/537 (25.70%), Postives = 218/537 (40.60%), Query Frame = 0


Query: 6   YSSDSDTTRRTYASVLSDNISSNLSEAGFSSDSDRFLQEKKRKEKSLAYFEKDTQIN-LK 65
           +SSDSD++R++YA VLSD+ S + ++  + + SD       R+  S+ +       N  +
Sbjct: 125 FSSDSDSSRKSYAKVLSDS-SEDDNKKRYKATSD---DSSSRRSSSIGFKPFTLSGNSFE 184

Query: 66  NVVVITRSCFHDEWHKIKHNLRKQIEVNFSLKPFHPEKAILTFQDKEHAKLLCSNNGNRG 125
             V+ITR CFHD+W++I  +LRKQ E+ FS KPF  +KAIL F + +HAKLLCSN G  G
Sbjct: 185 KTVIITRRCFHDDWNRIMFSLRKQSEIAFSYKPFQADKAIL-FLNPDHAKLLCSNKGANG 244

Query: 126 WSTVGKFFVKFE------------------------------------------------ 185
           WSTVG + VKFE                                                
Sbjct: 245 WSTVGNYQVKFESWDSNLHSFHSVIPSYGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDV 304

Query: 186 -----------------------------------------------KCKWLVERNINIH 245
                                                          + +WLVERN+ +H
Sbjct: 305 AKETMQMDKLIDAKIKVRYNYIGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVH 364

Query: 246 GTFKRQAAVSFNEFNLEEEMYNFAGNVAIPPKNCESTKSEVLKTEMTENLA---KTKIPH 305
           G+F+ +AA  F++ N   E Y + G  AIPP+   +     +      +++   + K  +
Sbjct: 365 GSFRTKAADEFDQHNHLAETYTYNGFQAIPPEPTRTHGDYSIHNSDKHSISYHTQAKKNN 424

Query: 306 SAYHEKSDKTTKITEKRLDKRKQLMADDDDTDSQLTSPAEKNNN---------------- 365
           S+  E      +++++R +K K ++  +D      +  +++ +N                
Sbjct: 425 SSESEYDPFDQQLSDRRKEKGKAILIINDQDHGHYSKRSKRISNRKVSFLSPGGIQSNSS 484

Query: 366 -------------GTLED------PPMHKRKFVKKYYRIKGKYNQIFDSGHLS---TIED 384
                         T+ D       P  K K  K  YRIK    +  +   LS   T E 
Sbjct: 485 NTEINTKGKSLEISTINDQFEKRWSPRQKTK-TKLTYRIKKDPQESTEDHKLSLKETGEG 544

[Close]

BLAST of PI0024393 vs. NCBI nr
Match: KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-22
Identity = 138/537 (25.70%), Postives = 218/537 (40.60%), Query Frame = 0


Query: 6   YSSDSDTTRRTYASVLSDNISSNLSEAGFSSDSDRFLQEKKRKEKSLAYFEKDTQIN-LK 65
           +SSDSD++R++YA VLSD+ S + ++  + + SD       R+  S+ +       N  +
Sbjct: 125 FSSDSDSSRKSYAKVLSDS-SEDDNKKRYKATSD---DSSSRRSSSIGFKPFTLSGNSFE 184

Query: 66  NVVVITRSCFHDEWHKIKHNLRKQIEVNFSLKPFHPEKAILTFQDKEHAKLLCSNNGNRG 125
             V+ITR CFHD+W++I  +LRKQ E+ FS KPF  +KAIL F + +HAKLLCSN G  G
Sbjct: 185 KTVIITRRCFHDDWNRIMFSLRKQSEIAFSYKPFQADKAIL-FLNPDHAKLLCSNKGANG 244

Query: 126 WSTVGKFFVKFE------------------------------------------------ 185
           WSTVG + VKFE                                                
Sbjct: 245 WSTVGNYQVKFESWDSNLHSFHSVIPSYGGWLRFRGIPLHLWNYNTFQHIGSACGGFLDV 304

Query: 186 -----------------------------------------------KCKWLVERNINIH 245
                                                          + +WLVERN+ +H
Sbjct: 305 AKETMQMDKLIDAKIKVRYNYIGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVH 364

Query: 246 GTFKRQAAVSFNEFNLEEEMYNFAGNVAIPPKNCESTKSEVLKTEMTENLA---KTKIPH 305
           G+F+ +AA  F++ N   E Y + G  AIPP+   +     +      +++   + K  +
Sbjct: 365 GSFRTKAADEFDQHNHLAETYTYNGFQAIPPEPTRTHGDYSIHNSDKHSISYHTQAKKNN 424

Query: 306 SAYHEKSDKTTKITEKRLDKRKQLMADDDDTDSQLTSPAEKNNN---------------- 365
           S+  E      +++++R +K K ++  +D      +  +++ +N                
Sbjct: 425 SSESEYDPFDQQLSDRRKEKGKAILIINDQDHGHYSKRSKRISNRKVSFLSPGGIQSNSS 484

Query: 366 -------------GTLED------PPMHKRKFVKKYYRIKGKYNQIFDSGHLS---TIED 384
                         T+ D       P  K K  K  YRIK    +  +   LS   T E 
Sbjct: 485 NTEINTKGKSLEISTINDQFEKRWSPRQKTK-TKLTYRIKKDPQESTEDHKLSLKETGEG 544

The following BLAST results are available for this feature:

BLAST of PI0024393 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024393 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DFM9	1.4e-27	28.49	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BKT8	2.0e-23	25.65	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TEP0	3.5e-23	26.57	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7US62	5.9e-23	25.70	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3CA17	5.9e-23	25.70	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of PI0024393 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035247.1	2.8e-27	28.49	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK224...	[more]
KAA0056838.1	4.2e-23	25.65	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993...	[more]
KAA0041398.1	7.2e-23	26.57	hypothetical protein E6C27_scaffold206G00440 [Cucumis melo var. makuwa]	[more]
TYK08190.1	1.2e-22	25.70	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0057507.1	1.2e-22	25.70	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0024393 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 374..405
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024393.1	PI0024393.1	mRNA