Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTGGGATTTCCGAATCAAGGGCTAAAGATGTTGGTTCCTTTGTCACTCGCTTGCGAATTAACAAACATGGAGTTCGCCTGCGAGGTTCATCCATAACGAAGGTCTCTGCATCCTTCCCCCAGTCTGCTCCAAACACTATTTCGGTACCTTCTCCTATTTCTTCTTTAAATGCATCTCCTGTTATACCTGCGTCTAATGAGTACTCCACTTCATCTTCCTCTACTGCCGCATCTAGTATGAATAATGTTCTCCTTATGCACTCTGATCATTCTCCCATGCATTCTATTGAGTCTCCTAATAACAATACTGTTGCTCATTCTCCTAGGTCCTCTACCTCTACTGAGGACAATGTTCCTCTTGCTCATTTGCTACAACGAACCAAGAAACATCATTCTCCTACTCCTACTCATAACCCTGTCCCTGATCATGATCCTGAAACCGAGACTGTCCCCACAAACATACCAGATCAGCCTACTCCTCAAAGCAAAACAAAAACAAAAAACAAGCGTGTTTCTAGAAAATCAGGTCGTCGTAAAATTCCTCCCCAGGTTCCCTTTGTCCCTATAGATGGAGTTTCCTTTCACCATGAGGAAAACGTCCACAAGTGGAAGTTTGTGGTCCATAGGCGTCTTGCTGATGAATGTGAGGTCTTGGACGATCATCATTCGTGCCTTGCTGTTATGAACTTAATCTCCAAAACTCATTTACTTACTACTGTTTCTAAACTTGGTCCTTTCTACCCAAAATTGATTCGAGAAATGATTGTCAATATTTCTTCCACCTTTAAGGACCCCAGTAGTCCTGACTTCCATACGATCCATGTTCGAGGTTTTTGTTTTAATATCTTTCCTGAGTTCATCAATTCTGCTCTTGGAATTACTATTTCCCCTGATCTGTTTGCTAGCACCCCTACACCTGACGAGTTAGCCACTAAACTAACCGAAGGTACTGTTTCTTAGTGGTCCTCCAATGGTCATCTAATGGTTGCCCGCTTAAGTGTTAAGTATGTCATTCTTCACAAGATTGGTATACACTGTTGGGTCCCTTCTCTTCACGCCTCTACTATTTCCCCTTCCTTAGCCAACTTAATTTTCCTGATTGGTACAAGTCGCCAAGTTGATTTTGGTACCTTTGTTGTCAACCAATTAAAAAGACATATTGACTCTTTTGCACTTAAGCTTCCCATAAGCCTTCCTCGTTTCTTCAGTACTTTACTTCTGTCCCAGTACCCAAATATCTTTCAACCCAATGAGGCTCTTGGTCAGTCCCCTTCCAAGCTGCAATTGAGTTACAGGTTATTTCAGGGATGTCATGTTCCTAACATTGAGCACACAATTCGTCATCCTGCTGCTGCCAACCTTCCACATCCTGATGATCTTCGAAGTCCAAATGGAGGCTTATTACTTCCTCCGTCCATTGCTAATCAGACTCTTCAAGTTTTATCTTCAGAATCTCGAAGTCTTAGTGGTATCATTCAAGACCTCACTAAACGAAGGAGACTTATTGACTCTGTGGTCTCCACTCTTCGTTTGATTCTCCCTGCCAATGAGGAAGCTCAGGAGGAAAATCTGACCGCCTAG
mRNA sequence
ATGGCTGTTGGGATTTCCGAATCAAGGGCTAAAGATGTTGGTTCCTTTGTCACTCGCTTGCGAATTAACAAACATGGAGTTCGCCTGCGAGGTTCATCCATAACGAAGGTCTCTGCATCCTTCCCCCAGTCTGCTCCAAACACTATTTCGGTACCTTCTCCTATTTCTTCTTTAAATGCATCTCCTGTTATACCTGCGTCTAATGAGTACTCCACTTCATCTTCCTCTACTGCCGCATCTAGTATGAATAATGTTCTCCTTATGCACTCTGATCATTCTCCCATGCATTCTATTGAGTCTCCTAATAACAATACTGTTGCTCATTCTCCTAGGTCCTCTACCTCTACTGAGGACAATGTTCCTCTTGCTCATTTGCTACAACGAACCAAGAAACATCATTCTCCTACTCCTACTCATAACCCTGTCCCTGATCATGATCCTGAAACCGAGACTGTCCCCACAAACATACCAGATCAGCCTACTCCTCAAAGCAAAACAAAAACAAAAAACAAGCGTGTTTCTAGAAAATCAGGTCGTCGTAAAATTCCTCCCCAGGTTCCCTTTGTCCCTATAGATGGAGTTTCCTTTCACCATGAGGAAAACGTCCACAAGTGGAAGTTTGTGGTCCATAGGCGTCTTGCTGATGAATGTGAGGTCTTGGACGATCATCATTCGTGCCTTGCTGTTATGAACTTAATCTCCAAAACTCATTTACTTACTACTGTTTCTAAACTTGGTCCTTTCTACCCAAAATTGATTCGAGAAATGATTGTCAATATTTCTTCCACCTTTAAGGACCCCAGTAGTCCTGACTTCCATACGATCCATGTTCGAGGTTTTTGTTTTAATATCTTTCCTGAGTTCATCAATTCTGCTCTTGGAATTACTATTTCCCCTGATCTGTTTGCTAGCACCCCTACACCTGACGAGTTAGCCACTAAACTAACCGAAGCCAACTTAATTTTCCTGATTGGTACAAGTCGCCAAGTTGATTTTGGTACCTTTGTTGTCAACCAATTAAAAAGACATATTGACTCTTTTGCACTTAAGCTTCCCATAAGCCTTCCTCGTTTCTTCAGTACTTTACTTCTGTCCCAGTACCCAAATATCTTTCAACCCAATGAGGCTCTTGGTCAGTCCCCTTCCAAGCTGCAATTGAGTTACAGGTTATTTCAGGGATGTCATGTTCCTAACATTGAGCACACAATTCGTCATCCTGCTGCTGCCAACCTTCCACATCCTGATGATCTTCGAAGTCCAAATGGAGGCTTATTACTTCCTCCGTCCATTGCTAATCAGACTCTTCAAGTTTTATCTTCAGAATCTCGAAGTCTTAGTGGTATCATTCAAGACCTCACTAAACGAAGGAGACTTATTGACTCTGTGGTCTCCACTCTTCGTTTGATTCTCCCTGCCAATGAGGAAGCTCAGGAGGAAAATCTGACCGCCTAG
Coding sequence (CDS)
ATGGCTGTTGGGATTTCCGAATCAAGGGCTAAAGATGTTGGTTCCTTTGTCACTCGCTTGCGAATTAACAAACATGGAGTTCGCCTGCGAGGTTCATCCATAACGAAGGTCTCTGCATCCTTCCCCCAGTCTGCTCCAAACACTATTTCGGTACCTTCTCCTATTTCTTCTTTAAATGCATCTCCTGTTATACCTGCGTCTAATGAGTACTCCACTTCATCTTCCTCTACTGCCGCATCTAGTATGAATAATGTTCTCCTTATGCACTCTGATCATTCTCCCATGCATTCTATTGAGTCTCCTAATAACAATACTGTTGCTCATTCTCCTAGGTCCTCTACCTCTACTGAGGACAATGTTCCTCTTGCTCATTTGCTACAACGAACCAAGAAACATCATTCTCCTACTCCTACTCATAACCCTGTCCCTGATCATGATCCTGAAACCGAGACTGTCCCCACAAACATACCAGATCAGCCTACTCCTCAAAGCAAAACAAAAACAAAAAACAAGCGTGTTTCTAGAAAATCAGGTCGTCGTAAAATTCCTCCCCAGGTTCCCTTTGTCCCTATAGATGGAGTTTCCTTTCACCATGAGGAAAACGTCCACAAGTGGAAGTTTGTGGTCCATAGGCGTCTTGCTGATGAATGTGAGGTCTTGGACGATCATCATTCGTGCCTTGCTGTTATGAACTTAATCTCCAAAACTCATTTACTTACTACTGTTTCTAAACTTGGTCCTTTCTACCCAAAATTGATTCGAGAAATGATTGTCAATATTTCTTCCACCTTTAAGGACCCCAGTAGTCCTGACTTCCATACGATCCATGTTCGAGGTTTTTGTTTTAATATCTTTCCTGAGTTCATCAATTCTGCTCTTGGAATTACTATTTCCCCTGATCTGTTTGCTAGCACCCCTACACCTGACGAGTTAGCCACTAAACTAACCGAAGCCAACTTAATTTTCCTGATTGGTACAAGTCGCCAAGTTGATTTTGGTACCTTTGTTGTCAACCAATTAAAAAGACATATTGACTCTTTTGCACTTAAGCTTCCCATAAGCCTTCCTCGTTTCTTCAGTACTTTACTTCTGTCCCAGTACCCAAATATCTTTCAACCCAATGAGGCTCTTGGTCAGTCCCCTTCCAAGCTGCAATTGAGTTACAGGTTATTTCAGGGATGTCATGTTCCTAACATTGAGCACACAATTCGTCATCCTGCTGCTGCCAACCTTCCACATCCTGATGATCTTCGAAGTCCAAATGGAGGCTTATTACTTCCTCCGTCCATTGCTAATCAGACTCTTCAAGTTTTATCTTCAGAATCTCGAAGTCTTAGTGGTATCATTCAAGACCTCACTAAACGAAGGAGACTTATTGACTCTGTGGTCTCCACTCTTCGTTTGATTCTCCCTGCCAATGAGGAAGCTCAGGAGGAAAATCTGACCGCCTAG
Protein sequence
MAVGISESRAKDVGSFVTRLRINKHGVRLRGSSITKVSASFPQSAPNTISVPSPISSLNASPVIPASNEYSTSSSSTAASSMNNVLLMHSDHSPMHSIESPNNNTVAHSPRSSTSTEDNVPLAHLLQRTKKHHSPTPTHNPVPDHDPETETVPTNIPDQPTPQSKTKTKNKRVSRKSGRRKIPPQVPFVPIDGVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAVMNLISKTHLLTTVSKLGPFYPKLIREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFINSALGITISPDLFASTPTPDELATKLTEANLIFLIGTSRQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLLSQYPNIFQPNEALGQSPSKLQLSYRLFQGCHVPNIEHTIRHPAAANLPHPDDLRSPNGGLLLPPSIANQTLQVLSSESRSLSGIIQDLTKRRRLIDSVVSTLRLILPANEEAQEENLTA
Homology
BLAST of PI0024363 vs. ExPASy TrEMBL
Match:
A0A5D3B7L1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002300 PE=4 SV=1)
HSP 1 Score: 244.2 bits (622), Expect = 1.1e-60
Identity = 144/343 (41.98%), Postives = 205/343 (59.77%), Query Frame = 0
Query: 75 SSTAASSMNNVLLMHSDHSPMHSIES-PNNNTVAHSPRSSTSTEDNV-PLAHLLQRTKKH 134
SS S + ++ + H+ + + S P T A S + +D V P+A +
Sbjct: 309 SSPIQSPIPDIAALFDSHAALPTASSIPERGTDARSEETPFDNDDGVEPVA-----PGDY 368
Query: 135 HSPTPTHNPVPDHDPETETVPTNIPDQPTPQSKTKTKNKR-VSRKSGRRKIPPQVPFVPI 194
+ P + V DP + P+++P + P K + +R ++ K+GR+KIP +P VPI
Sbjct: 369 NDEVPVADTV---DPGAQQEPSSVPTELKPARKKGQQIRRNITTKAGRKKIPLNIPSVPI 428
Query: 195 DGVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAVMNLISKTHLLTTVSKLGPFYPK 254
DG+SFH EEN+H+WKFVV RR+ADE + D HHSC+++MNLI K L T+S + PFYP+
Sbjct: 429 DGISFHLEENIHRWKFVVQRRIADEVNISDKHHSCVSIMNLIEKARLSKTISDVYPFYPQ 488
Query: 255 LIREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFINSALGITISPDLFASTPTPDEL 314
LIRE IVN+ + DPSSPD+ T+H+RGF F I P IN +G +S + S+ + D L
Sbjct: 489 LIREFIVNLPTNVNDPSSPDYLTVHIRGFKFTISPTMINGFMGNVVSINFSPSSSSTDVL 548
Query: 315 ATKLTEANL-------IFLIGTSRQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLL 374
A++L+ L I + S +VD G F+ NQL RH+ SF +KLPI+LPRFFS LLL
Sbjct: 549 ASELSRVTLSSWPVNGIPAVVLSVKVDAGAFIYNQLLRHVGSFGVKLPIALPRFFSDLLL 608
Query: 375 SQYPNIFQPNEALGQSPSKLQLSYRLFQGCHVPNIEHTIRHPA 408
+ +A G P L LSYRLFQG HVP+I+H + HP+
Sbjct: 609 HLNAVVLTTLDAPGPDPKTLTLSYRLFQGSHVPDIDHDV-HPS 642
BLAST of PI0024363 vs. ExPASy TrEMBL
Match:
A0A5A7V603 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001610 PE=4 SV=1)
HSP 1 Score: 236.1 bits (601), Expect = 3.0e-58
Identity = 143/384 (37.24%), Postives = 207/384 (53.91%), Query Frame = 0
Query: 144 DHDPETE--TVP----TNIPDQPT-----PQSKTKTKNKRVSRKSGRRKIPPQVPFVPID 203
D+ P TE TVP T+I D T P T+ +S K+GR+KIPP VPFVPID
Sbjct: 562 DYVPRTEEKTVPEATSTSIEDHSTFHAKHPSDHRSTEEPVISTKAGRQKIPPNVPFVPID 621
Query: 204 GVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAVMNLISKTHLLTTVSKLGPFYPKL 263
GVSFH EE+ HKW +VV RR+ADE ++D ++S A+++LI L+ TVSK+GPFYP+L
Sbjct: 622 GVSFHSEEDAHKWNYVVKRRIADEANIVDQYNSYPAILDLIRNVRLIRTVSKVGPFYPRL 681
Query: 264 IREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFINSALGITISPDLFASTPTPDELA 323
+RE+IVN+ S F DPS+ ++ +H+RG FN+ PE +N+ LG+++ D S PTP+ LA
Sbjct: 682 MRELIVNLPSDFNDPSADEYQKVHIRGVYFNMSPELLNTYLGLSLPADYAVSYPTPERLA 741
Query: 324 TKLTEANL---------------------------------------------IFLIGTS 383
+LT + ++L+GT
Sbjct: 742 EELTGGTIPVWPVDGQLQVAYLTIKYSILHRIRISNWIPSTHAFTILTSLGHFVYLVGTG 801
Query: 384 RQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLLSQYPNIFQPNEALGQSPSKLQLS 443
+V+ F+ N L RH+D+FA+ +PI PR S LL+Q + +G P + L
Sbjct: 802 VKVNASEFIFNHLLRHVDTFAIHIPICFPRILSEFLLAQQSTNLTSLDTIGTGPRVIPLK 861
Query: 444 YRLFQGCHVPNI----EHTIRHPAAANLPHPDDLRSPNGGLLLPPSIANQTLQVLSSESR 468
LFQG ++P+I ++ + A HP + + L L S+ N LQ L +ES
Sbjct: 862 MHLFQGSYIPDIVVEFDNAPGGTSIAATTHP----TVSHPLTLSVSLVNLLLQALIAESC 921
BLAST of PI0024363 vs. ExPASy TrEMBL
Match:
A0A1S3CND8 (uncharacterized protein LOC103502436 OS=Cucumis melo OX=3656 GN=LOC103502436 PE=4 SV=1)
HSP 1 Score: 229.6 bits (584), Expect = 2.8e-56
Identity = 134/342 (39.18%), Postives = 189/342 (55.26%), Query Frame = 0
Query: 111 RSSTSTEDNVPLAHLLQRTKKHHSPTPTHNPV-PDHDPETETVPTNIPDQPTPQSKTKTK 170
RS + DNV L+ H+ P + + P +T +VPT ++ + + K +
Sbjct: 53 RSEETPLDNVDGVELVV-PSDHNDEVPVADTIDPSAQQQTPSVPT---ERKSSRKKGQQL 112
Query: 171 NKRVSRKSGRRKIPPQVPFVPIDGVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAV 230
+ ++ K+GR+KIP +P VPI G+SFHHEENV +WKFVV RR+ADE + + HHSC+++
Sbjct: 113 RRNITTKAGRKKIPLNIPSVPIYGISFHHEENVQRWKFVVQRRIADEVNISNKHHSCVSI 172
Query: 231 MNLISKTHLLTTVSKLGPFYPKLIREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFI 290
+NLI K L T+S +G YPKLIR+ IVN+S+ F DPSSPD+ T+H+RGF F I P I
Sbjct: 173 INLIEKAGLSKTISNVGSIYPKLIRKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVI 232
Query: 291 NSALGITISPDLFASTPTPDELATKLTEANL----------------------------- 350
N LG +S + S+P+ D LA+ L+ L
Sbjct: 233 NGFLGNDVSINFSPSSPSTDVLASVLSGGALSLWLVDGIPAIALSVNYAILHKIGIANWF 292
Query: 351 ---------------IFLIGTSRQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLLS 408
++ I +VD G F+ NQL RH+ SF +KL I+LPRFFS LLL
Sbjct: 293 PSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLH 352
BLAST of PI0024363 vs. ExPASy TrEMBL
Match:
A0A5D3BB19 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00310 PE=4 SV=1)
HSP 1 Score: 228.8 bits (582), Expect = 4.9e-56
Identity = 135/355 (38.03%), Postives = 191/355 (53.80%), Query Frame = 0
Query: 98 IESPNNNTVAHSPRSSTSTEDNVPLAHLLQRTKKHHSPTPTHNPV-PDHDPETETVPTNI 157
++ P T A S + D V L H+ P + + P +T +VPT
Sbjct: 59 LDIPEGGTEARSEETPLDNVDGVELV----VPSDHNDEVPVADTIDPSAQQQTPSVPT-- 118
Query: 158 PDQPTPQSKTKTKNKRVSRKSGRRKIPPQVPFVPIDGVSFHHEENVHKWKFVVHRRLADE 217
++ + + K + + ++ K+GR+KIP +P VPI G+SFHHEENV +WKFVV RR+ADE
Sbjct: 119 -ERKSSRKKGQQLRRNITTKAGRKKIPLNIPSVPIYGISFHHEENVQRWKFVVQRRIADE 178
Query: 218 CEVLDDHHSCLAVMNLISKTHLLTTVSKLGPFYPKLIREMIVNISSTFKDPSSPDFHTIH 277
+ + HHSC++++NLI K L T+S +G YPKLIR+ IVN+S+ F DPSSPD+ T+H
Sbjct: 179 VNISNKHHSCVSIINLIEKAGLSKTISNVGSIYPKLIRKFIVNLSADFNDPSSPDYQTVH 238
Query: 278 VRGFCFNIFPEFINSALGITISPDLFASTPTPDELATKLTEANL---------------- 337
+RGF F I P IN LG +S + S+P+ D LA+ L+ L
Sbjct: 239 IRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGALSLWLVDGIPAIALSVN 298
Query: 338 ----------------------------IFLIGTSRQVDFGTFVVNQLKRHIDSFALKLP 397
++ I +VD G F+ NQL RH+ SF +KL
Sbjct: 299 YAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLS 358
Query: 398 ISLPRFFSTLLLSQYPNIFQPNEALGQSPSKLQLSYRLFQGCHVPNIEHTIRHPA 408
I+LPRFFS LLL Y + ++A P L LSYRLFQ HVP+I+H + HP+
Sbjct: 359 IALPRFFSDLLLHLYAAVLTTSDAPSPDPKTLSLSYRLFQDSHVPDIDHDV-HPS 405
BLAST of PI0024363 vs. ExPASy TrEMBL
Match:
A0A1S3CJS2 (uncharacterized protein LOC103501750 OS=Cucumis melo OX=3656 GN=LOC103501750 PE=4 SV=1)
HSP 1 Score: 227.6 bits (579), Expect = 1.1e-55
Identity = 167/513 (32.55%), Postives = 250/513 (48.73%), Query Frame = 0
Query: 33 SITKVSASFPQSAPNTISVPSPISSLNASPVIPA-------SNEYSTSSSST-------- 92
S +VS+ +S P T+ P+P SS + +P IP SN+ SSST
Sbjct: 22 SQAEVSSRLSESMPETVDSPNPTSSSSHAPNIPETIVSDMDSNDLDDESSSTEGVFVPTP 81
Query: 93 AASSMNNVLLMHSDHSPMHSIESPNNNTVAHSPRSSTSTEDNVPLAHLLQRTKKHHSPTP 152
+N+ S HSP I SP + + P ++ + L RT ++
Sbjct: 82 GIHHTSNIQPGPSIHSPF--IRSPISEPLPSKPNTAHAIVPGEVSIEPLVRTDVYNDEDE 141
Query: 153 THNPVPD-HDPETETVPTN----------IPDQPTPQSKTKTKNKRVSRKSGRRKIPPQV 212
+ P P H E V N IP + P K +N+R + +GR+KIPP++
Sbjct: 142 LNPPNPKVHSEEFSDVADNNLTASPASYAIPVESQPAKKKSQQNRR-NITAGRKKIPPKI 201
Query: 213 PFVPIDGVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAVMNLISKTHLLTTVSKLG 272
V IDG+SFHHEENV +WKF+V RRLAD V H SC+++MNLI L T+S +G
Sbjct: 202 SSVLIDGISFHHEENVQRWKFMVQRRLADGVNVSVKHQSCISIMNLIEMAGLSKTISNVG 261
Query: 273 PFYPKLIREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFINSALGITISPDLFASTP 332
PFYP+LI++ IVN+ F DPSS D+ T+H+RGF F I IN LG ++ D S+P
Sbjct: 262 PFYPQLIKKFIVNLPDEFNDPSSSDYQTVHIRGFKFIISTAVINGFLGNFVALDCSLSSP 321
Query: 333 TPDELATKLTEANL--------------------------------------------IF 392
+ + LA L+ L ++
Sbjct: 322 SKEVLAFVLSGGTLSSWLVNGILVVALSVKYAILHKISIANWFPSSYASSVSAALGTFLY 381
Query: 393 LIGTSRQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLLSQYPNIFQPNEALGQSPS 452
I +VD G F+ N+L RH+ F +K+PI+LPRFFS++LL + ++ALG +P
Sbjct: 382 RICNDDKVDTGAFIHNKLLRHVGLFGVKIPIALPRFFSSMLLHLNVVVITASDALGPNPK 441
Query: 453 KLQLSYRLFQGCHVPNIEHTIRHPAAANLPHPDDLRSPNGGLLLPPSIANQTLQVLSSES 476
L LSYRLFQG HVP+I+ + + + D G + +A++ + L+ ES
Sbjct: 442 TLSLSYRLFQGSHVPDIDRDVHPSRGSGIFDSSDWDESADGFFVDRELASRIVNSLTVES 501
BLAST of PI0024363 vs. NCBI nr
Match:
KAA0036856.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95920.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 244.2 bits (622), Expect = 2.3e-60
Identity = 144/343 (41.98%), Postives = 205/343 (59.77%), Query Frame = 0
Query: 75 SSTAASSMNNVLLMHSDHSPMHSIES-PNNNTVAHSPRSSTSTEDNV-PLAHLLQRTKKH 134
SS S + ++ + H+ + + S P T A S + +D V P+A +
Sbjct: 309 SSPIQSPIPDIAALFDSHAALPTASSIPERGTDARSEETPFDNDDGVEPVA-----PGDY 368
Query: 135 HSPTPTHNPVPDHDPETETVPTNIPDQPTPQSKTKTKNKR-VSRKSGRRKIPPQVPFVPI 194
+ P + V DP + P+++P + P K + +R ++ K+GR+KIP +P VPI
Sbjct: 369 NDEVPVADTV---DPGAQQEPSSVPTELKPARKKGQQIRRNITTKAGRKKIPLNIPSVPI 428
Query: 195 DGVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAVMNLISKTHLLTTVSKLGPFYPK 254
DG+SFH EEN+H+WKFVV RR+ADE + D HHSC+++MNLI K L T+S + PFYP+
Sbjct: 429 DGISFHLEENIHRWKFVVQRRIADEVNISDKHHSCVSIMNLIEKARLSKTISDVYPFYPQ 488
Query: 255 LIREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFINSALGITISPDLFASTPTPDEL 314
LIRE IVN+ + DPSSPD+ T+H+RGF F I P IN +G +S + S+ + D L
Sbjct: 489 LIREFIVNLPTNVNDPSSPDYLTVHIRGFKFTISPTMINGFMGNVVSINFSPSSSSTDVL 548
Query: 315 ATKLTEANL-------IFLIGTSRQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLL 374
A++L+ L I + S +VD G F+ NQL RH+ SF +KLPI+LPRFFS LLL
Sbjct: 549 ASELSRVTLSSWPVNGIPAVVLSVKVDAGAFIYNQLLRHVGSFGVKLPIALPRFFSDLLL 608
Query: 375 SQYPNIFQPNEALGQSPSKLQLSYRLFQGCHVPNIEHTIRHPA 408
+ +A G P L LSYRLFQG HVP+I+H + HP+
Sbjct: 609 HLNAVVLTTLDAPGPDPKTLTLSYRLFQGSHVPDIDHDV-HPS 642
BLAST of PI0024363 vs. NCBI nr
Match:
KAA0063048.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 236.1 bits (601), Expect = 6.3e-58
Identity = 143/384 (37.24%), Postives = 207/384 (53.91%), Query Frame = 0
Query: 144 DHDPETE--TVP----TNIPDQPT-----PQSKTKTKNKRVSRKSGRRKIPPQVPFVPID 203
D+ P TE TVP T+I D T P T+ +S K+GR+KIPP VPFVPID
Sbjct: 562 DYVPRTEEKTVPEATSTSIEDHSTFHAKHPSDHRSTEEPVISTKAGRQKIPPNVPFVPID 621
Query: 204 GVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAVMNLISKTHLLTTVSKLGPFYPKL 263
GVSFH EE+ HKW +VV RR+ADE ++D ++S A+++LI L+ TVSK+GPFYP+L
Sbjct: 622 GVSFHSEEDAHKWNYVVKRRIADEANIVDQYNSYPAILDLIRNVRLIRTVSKVGPFYPRL 681
Query: 264 IREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFINSALGITISPDLFASTPTPDELA 323
+RE+IVN+ S F DPS+ ++ +H+RG FN+ PE +N+ LG+++ D S PTP+ LA
Sbjct: 682 MRELIVNLPSDFNDPSADEYQKVHIRGVYFNMSPELLNTYLGLSLPADYAVSYPTPERLA 741
Query: 324 TKLTEANL---------------------------------------------IFLIGTS 383
+LT + ++L+GT
Sbjct: 742 EELTGGTIPVWPVDGQLQVAYLTIKYSILHRIRISNWIPSTHAFTILTSLGHFVYLVGTG 801
Query: 384 RQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLLSQYPNIFQPNEALGQSPSKLQLS 443
+V+ F+ N L RH+D+FA+ +PI PR S LL+Q + +G P + L
Sbjct: 802 VKVNASEFIFNHLLRHVDTFAIHIPICFPRILSEFLLAQQSTNLTSLDTIGTGPRVIPLK 861
Query: 444 YRLFQGCHVPNI----EHTIRHPAAANLPHPDDLRSPNGGLLLPPSIANQTLQVLSSESR 468
LFQG ++P+I ++ + A HP + + L L S+ N LQ L +ES
Sbjct: 862 MHLFQGSYIPDIVVEFDNAPGGTSIAATTHP----TVSHPLTLSVSLVNLLLQALIAESC 921
BLAST of PI0024363 vs. NCBI nr
Match:
XP_008464590.1 (PREDICTED: uncharacterized protein LOC103502436 [Cucumis melo])
HSP 1 Score: 229.6 bits (584), Expect = 5.9e-56
Identity = 134/342 (39.18%), Postives = 189/342 (55.26%), Query Frame = 0
Query: 111 RSSTSTEDNVPLAHLLQRTKKHHSPTPTHNPV-PDHDPETETVPTNIPDQPTPQSKTKTK 170
RS + DNV L+ H+ P + + P +T +VPT ++ + + K +
Sbjct: 53 RSEETPLDNVDGVELVV-PSDHNDEVPVADTIDPSAQQQTPSVPT---ERKSSRKKGQQL 112
Query: 171 NKRVSRKSGRRKIPPQVPFVPIDGVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAV 230
+ ++ K+GR+KIP +P VPI G+SFHHEENV +WKFVV RR+ADE + + HHSC+++
Sbjct: 113 RRNITTKAGRKKIPLNIPSVPIYGISFHHEENVQRWKFVVQRRIADEVNISNKHHSCVSI 172
Query: 231 MNLISKTHLLTTVSKLGPFYPKLIREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFI 290
+NLI K L T+S +G YPKLIR+ IVN+S+ F DPSSPD+ T+H+RGF F I P I
Sbjct: 173 INLIEKAGLSKTISNVGSIYPKLIRKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVI 232
Query: 291 NSALGITISPDLFASTPTPDELATKLTEANL----------------------------- 350
N LG +S + S+P+ D LA+ L+ L
Sbjct: 233 NGFLGNDVSINFSPSSPSTDVLASVLSGGALSLWLVDGIPAIALSVNYAILHKIGIANWF 292
Query: 351 ---------------IFLIGTSRQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLLS 408
++ I +VD G F+ NQL RH+ SF +KL I+LPRFFS LLL
Sbjct: 293 PSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLH 352
BLAST of PI0024363 vs. NCBI nr
Match:
TYJ96199.1 (uncharacterized protein E5676_scaffold261G00310 [Cucumis melo var. makuwa])
HSP 1 Score: 228.8 bits (582), Expect = 1.0e-55
Identity = 135/355 (38.03%), Postives = 191/355 (53.80%), Query Frame = 0
Query: 98 IESPNNNTVAHSPRSSTSTEDNVPLAHLLQRTKKHHSPTPTHNPV-PDHDPETETVPTNI 157
++ P T A S + D V L H+ P + + P +T +VPT
Sbjct: 59 LDIPEGGTEARSEETPLDNVDGVELV----VPSDHNDEVPVADTIDPSAQQQTPSVPT-- 118
Query: 158 PDQPTPQSKTKTKNKRVSRKSGRRKIPPQVPFVPIDGVSFHHEENVHKWKFVVHRRLADE 217
++ + + K + + ++ K+GR+KIP +P VPI G+SFHHEENV +WKFVV RR+ADE
Sbjct: 119 -ERKSSRKKGQQLRRNITTKAGRKKIPLNIPSVPIYGISFHHEENVQRWKFVVQRRIADE 178
Query: 218 CEVLDDHHSCLAVMNLISKTHLLTTVSKLGPFYPKLIREMIVNISSTFKDPSSPDFHTIH 277
+ + HHSC++++NLI K L T+S +G YPKLIR+ IVN+S+ F DPSSPD+ T+H
Sbjct: 179 VNISNKHHSCVSIINLIEKAGLSKTISNVGSIYPKLIRKFIVNLSADFNDPSSPDYQTVH 238
Query: 278 VRGFCFNIFPEFINSALGITISPDLFASTPTPDELATKLTEANL---------------- 337
+RGF F I P IN LG +S + S+P+ D LA+ L+ L
Sbjct: 239 IRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGALSLWLVDGIPAIALSVN 298
Query: 338 ----------------------------IFLIGTSRQVDFGTFVVNQLKRHIDSFALKLP 397
++ I +VD G F+ NQL RH+ SF +KL
Sbjct: 299 YAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLS 358
Query: 398 ISLPRFFSTLLLSQYPNIFQPNEALGQSPSKLQLSYRLFQGCHVPNIEHTIRHPA 408
I+LPRFFS LLL Y + ++A P L LSYRLFQ HVP+I+H + HP+
Sbjct: 359 IALPRFFSDLLLHLYAAVLTTSDAPSPDPKTLSLSYRLFQDSHVPDIDHDV-HPS 405
BLAST of PI0024363 vs. NCBI nr
Match:
XP_008463658.1 (PREDICTED: uncharacterized protein LOC103501750 [Cucumis melo])
HSP 1 Score: 227.6 bits (579), Expect = 2.2e-55
Identity = 167/513 (32.55%), Postives = 250/513 (48.73%), Query Frame = 0
Query: 33 SITKVSASFPQSAPNTISVPSPISSLNASPVIPA-------SNEYSTSSSST-------- 92
S +VS+ +S P T+ P+P SS + +P IP SN+ SSST
Sbjct: 22 SQAEVSSRLSESMPETVDSPNPTSSSSHAPNIPETIVSDMDSNDLDDESSSTEGVFVPTP 81
Query: 93 AASSMNNVLLMHSDHSPMHSIESPNNNTVAHSPRSSTSTEDNVPLAHLLQRTKKHHSPTP 152
+N+ S HSP I SP + + P ++ + L RT ++
Sbjct: 82 GIHHTSNIQPGPSIHSPF--IRSPISEPLPSKPNTAHAIVPGEVSIEPLVRTDVYNDEDE 141
Query: 153 THNPVPD-HDPETETVPTN----------IPDQPTPQSKTKTKNKRVSRKSGRRKIPPQV 212
+ P P H E V N IP + P K +N+R + +GR+KIPP++
Sbjct: 142 LNPPNPKVHSEEFSDVADNNLTASPASYAIPVESQPAKKKSQQNRR-NITAGRKKIPPKI 201
Query: 213 PFVPIDGVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAVMNLISKTHLLTTVSKLG 272
V IDG+SFHHEENV +WKF+V RRLAD V H SC+++MNLI L T+S +G
Sbjct: 202 SSVLIDGISFHHEENVQRWKFMVQRRLADGVNVSVKHQSCISIMNLIEMAGLSKTISNVG 261
Query: 273 PFYPKLIREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFINSALGITISPDLFASTP 332
PFYP+LI++ IVN+ F DPSS D+ T+H+RGF F I IN LG ++ D S+P
Sbjct: 262 PFYPQLIKKFIVNLPDEFNDPSSSDYQTVHIRGFKFIISTAVINGFLGNFVALDCSLSSP 321
Query: 333 TPDELATKLTEANL--------------------------------------------IF 392
+ + LA L+ L ++
Sbjct: 322 SKEVLAFVLSGGTLSSWLVNGILVVALSVKYAILHKISIANWFPSSYASSVSAALGTFLY 381
Query: 393 LIGTSRQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLLSQYPNIFQPNEALGQSPS 452
I +VD G F+ N+L RH+ F +K+PI+LPRFFS++LL + ++ALG +P
Sbjct: 382 RICNDDKVDTGAFIHNKLLRHVGLFGVKIPIALPRFFSSMLLHLNVVVITASDALGPNPK 441
Query: 453 KLQLSYRLFQGCHVPNIEHTIRHPAAANLPHPDDLRSPNGGLLLPPSIANQTLQVLSSES 476
L LSYRLFQG HVP+I+ + + + D G + +A++ + L+ ES
Sbjct: 442 TLSLSYRLFQGSHVPDIDRDVHPSRGSGIFDSSDWDESADGFFVDRELASRIVNSLTVES 501
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3B7L1 | 1.1e-60 | 41.98 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G... | [more] |
A0A5A7V603 | 3.0e-58 | 37.24 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G... | [more] |
A0A1S3CND8 | 2.8e-56 | 39.18 | uncharacterized protein LOC103502436 OS=Cucumis melo OX=3656 GN=LOC103502436 PE=... | [more] |
A0A5D3BB19 | 4.9e-56 | 38.03 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3CJS2 | 1.1e-55 | 32.55 | uncharacterized protein LOC103501750 OS=Cucumis melo OX=3656 GN=LOC103501750 PE=... | [more] |
Match Name | E-value | Identity | Description | |
KAA0036856.1 | 2.3e-60 | 41.98 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95920.1 gag-pol polyprotein [... | [more] |
KAA0063048.1 | 6.3e-58 | 37.24 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
XP_008464590.1 | 5.9e-56 | 39.18 | PREDICTED: uncharacterized protein LOC103502436 [Cucumis melo] | [more] |
TYJ96199.1 | 1.0e-55 | 38.03 | uncharacterized protein E5676_scaffold261G00310 [Cucumis melo var. makuwa] | [more] |
XP_008463658.1 | 2.2e-55 | 32.55 | PREDICTED: uncharacterized protein LOC103501750 [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |