PI0024363 (gene) Melon (PI 482460) v1

Overview
NamePI0024363
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationchr11: 22938510 .. 22940096 (+)
RNA-Seq ExpressionPI0024363
SyntenyPI0024363
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTGGGATTTCCGAATCAAGGGCTAAAGATGTTGGTTCCTTTGTCACTCGCTTGCGAATTAACAAACATGGAGTTCGCCTGCGAGGTTCATCCATAACGAAGGTCTCTGCATCCTTCCCCCAGTCTGCTCCAAACACTATTTCGGTACCTTCTCCTATTTCTTCTTTAAATGCATCTCCTGTTATACCTGCGTCTAATGAGTACTCCACTTCATCTTCCTCTACTGCCGCATCTAGTATGAATAATGTTCTCCTTATGCACTCTGATCATTCTCCCATGCATTCTATTGAGTCTCCTAATAACAATACTGTTGCTCATTCTCCTAGGTCCTCTACCTCTACTGAGGACAATGTTCCTCTTGCTCATTTGCTACAACGAACCAAGAAACATCATTCTCCTACTCCTACTCATAACCCTGTCCCTGATCATGATCCTGAAACCGAGACTGTCCCCACAAACATACCAGATCAGCCTACTCCTCAAAGCAAAACAAAAACAAAAAACAAGCGTGTTTCTAGAAAATCAGGTCGTCGTAAAATTCCTCCCCAGGTTCCCTTTGTCCCTATAGATGGAGTTTCCTTTCACCATGAGGAAAACGTCCACAAGTGGAAGTTTGTGGTCCATAGGCGTCTTGCTGATGAATGTGAGGTCTTGGACGATCATCATTCGTGCCTTGCTGTTATGAACTTAATCTCCAAAACTCATTTACTTACTACTGTTTCTAAACTTGGTCCTTTCTACCCAAAATTGATTCGAGAAATGATTGTCAATATTTCTTCCACCTTTAAGGACCCCAGTAGTCCTGACTTCCATACGATCCATGTTCGAGGTTTTTGTTTTAATATCTTTCCTGAGTTCATCAATTCTGCTCTTGGAATTACTATTTCCCCTGATCTGTTTGCTAGCACCCCTACACCTGACGAGTTAGCCACTAAACTAACCGAAGGTACTGTTTCTTAGTGGTCCTCCAATGGTCATCTAATGGTTGCCCGCTTAAGTGTTAAGTATGTCATTCTTCACAAGATTGGTATACACTGTTGGGTCCCTTCTCTTCACGCCTCTACTATTTCCCCTTCCTTAGCCAACTTAATTTTCCTGATTGGTACAAGTCGCCAAGTTGATTTTGGTACCTTTGTTGTCAACCAATTAAAAAGACATATTGACTCTTTTGCACTTAAGCTTCCCATAAGCCTTCCTCGTTTCTTCAGTACTTTACTTCTGTCCCAGTACCCAAATATCTTTCAACCCAATGAGGCTCTTGGTCAGTCCCCTTCCAAGCTGCAATTGAGTTACAGGTTATTTCAGGGATGTCATGTTCCTAACATTGAGCACACAATTCGTCATCCTGCTGCTGCCAACCTTCCACATCCTGATGATCTTCGAAGTCCAAATGGAGGCTTATTACTTCCTCCGTCCATTGCTAATCAGACTCTTCAAGTTTTATCTTCAGAATCTCGAAGTCTTAGTGGTATCATTCAAGACCTCACTAAACGAAGGAGACTTATTGACTCTGTGGTCTCCACTCTTCGTTTGATTCTCCCTGCCAATGAGGAAGCTCAGGAGGAAAATCTGACCGCCTAG

mRNA sequence

ATGGCTGTTGGGATTTCCGAATCAAGGGCTAAAGATGTTGGTTCCTTTGTCACTCGCTTGCGAATTAACAAACATGGAGTTCGCCTGCGAGGTTCATCCATAACGAAGGTCTCTGCATCCTTCCCCCAGTCTGCTCCAAACACTATTTCGGTACCTTCTCCTATTTCTTCTTTAAATGCATCTCCTGTTATACCTGCGTCTAATGAGTACTCCACTTCATCTTCCTCTACTGCCGCATCTAGTATGAATAATGTTCTCCTTATGCACTCTGATCATTCTCCCATGCATTCTATTGAGTCTCCTAATAACAATACTGTTGCTCATTCTCCTAGGTCCTCTACCTCTACTGAGGACAATGTTCCTCTTGCTCATTTGCTACAACGAACCAAGAAACATCATTCTCCTACTCCTACTCATAACCCTGTCCCTGATCATGATCCTGAAACCGAGACTGTCCCCACAAACATACCAGATCAGCCTACTCCTCAAAGCAAAACAAAAACAAAAAACAAGCGTGTTTCTAGAAAATCAGGTCGTCGTAAAATTCCTCCCCAGGTTCCCTTTGTCCCTATAGATGGAGTTTCCTTTCACCATGAGGAAAACGTCCACAAGTGGAAGTTTGTGGTCCATAGGCGTCTTGCTGATGAATGTGAGGTCTTGGACGATCATCATTCGTGCCTTGCTGTTATGAACTTAATCTCCAAAACTCATTTACTTACTACTGTTTCTAAACTTGGTCCTTTCTACCCAAAATTGATTCGAGAAATGATTGTCAATATTTCTTCCACCTTTAAGGACCCCAGTAGTCCTGACTTCCATACGATCCATGTTCGAGGTTTTTGTTTTAATATCTTTCCTGAGTTCATCAATTCTGCTCTTGGAATTACTATTTCCCCTGATCTGTTTGCTAGCACCCCTACACCTGACGAGTTAGCCACTAAACTAACCGAAGCCAACTTAATTTTCCTGATTGGTACAAGTCGCCAAGTTGATTTTGGTACCTTTGTTGTCAACCAATTAAAAAGACATATTGACTCTTTTGCACTTAAGCTTCCCATAAGCCTTCCTCGTTTCTTCAGTACTTTACTTCTGTCCCAGTACCCAAATATCTTTCAACCCAATGAGGCTCTTGGTCAGTCCCCTTCCAAGCTGCAATTGAGTTACAGGTTATTTCAGGGATGTCATGTTCCTAACATTGAGCACACAATTCGTCATCCTGCTGCTGCCAACCTTCCACATCCTGATGATCTTCGAAGTCCAAATGGAGGCTTATTACTTCCTCCGTCCATTGCTAATCAGACTCTTCAAGTTTTATCTTCAGAATCTCGAAGTCTTAGTGGTATCATTCAAGACCTCACTAAACGAAGGAGACTTATTGACTCTGTGGTCTCCACTCTTCGTTTGATTCTCCCTGCCAATGAGGAAGCTCAGGAGGAAAATCTGACCGCCTAG

Coding sequence (CDS)

ATGGCTGTTGGGATTTCCGAATCAAGGGCTAAAGATGTTGGTTCCTTTGTCACTCGCTTGCGAATTAACAAACATGGAGTTCGCCTGCGAGGTTCATCCATAACGAAGGTCTCTGCATCCTTCCCCCAGTCTGCTCCAAACACTATTTCGGTACCTTCTCCTATTTCTTCTTTAAATGCATCTCCTGTTATACCTGCGTCTAATGAGTACTCCACTTCATCTTCCTCTACTGCCGCATCTAGTATGAATAATGTTCTCCTTATGCACTCTGATCATTCTCCCATGCATTCTATTGAGTCTCCTAATAACAATACTGTTGCTCATTCTCCTAGGTCCTCTACCTCTACTGAGGACAATGTTCCTCTTGCTCATTTGCTACAACGAACCAAGAAACATCATTCTCCTACTCCTACTCATAACCCTGTCCCTGATCATGATCCTGAAACCGAGACTGTCCCCACAAACATACCAGATCAGCCTACTCCTCAAAGCAAAACAAAAACAAAAAACAAGCGTGTTTCTAGAAAATCAGGTCGTCGTAAAATTCCTCCCCAGGTTCCCTTTGTCCCTATAGATGGAGTTTCCTTTCACCATGAGGAAAACGTCCACAAGTGGAAGTTTGTGGTCCATAGGCGTCTTGCTGATGAATGTGAGGTCTTGGACGATCATCATTCGTGCCTTGCTGTTATGAACTTAATCTCCAAAACTCATTTACTTACTACTGTTTCTAAACTTGGTCCTTTCTACCCAAAATTGATTCGAGAAATGATTGTCAATATTTCTTCCACCTTTAAGGACCCCAGTAGTCCTGACTTCCATACGATCCATGTTCGAGGTTTTTGTTTTAATATCTTTCCTGAGTTCATCAATTCTGCTCTTGGAATTACTATTTCCCCTGATCTGTTTGCTAGCACCCCTACACCTGACGAGTTAGCCACTAAACTAACCGAAGCCAACTTAATTTTCCTGATTGGTACAAGTCGCCAAGTTGATTTTGGTACCTTTGTTGTCAACCAATTAAAAAGACATATTGACTCTTTTGCACTTAAGCTTCCCATAAGCCTTCCTCGTTTCTTCAGTACTTTACTTCTGTCCCAGTACCCAAATATCTTTCAACCCAATGAGGCTCTTGGTCAGTCCCCTTCCAAGCTGCAATTGAGTTACAGGTTATTTCAGGGATGTCATGTTCCTAACATTGAGCACACAATTCGTCATCCTGCTGCTGCCAACCTTCCACATCCTGATGATCTTCGAAGTCCAAATGGAGGCTTATTACTTCCTCCGTCCATTGCTAATCAGACTCTTCAAGTTTTATCTTCAGAATCTCGAAGTCTTAGTGGTATCATTCAAGACCTCACTAAACGAAGGAGACTTATTGACTCTGTGGTCTCCACTCTTCGTTTGATTCTCCCTGCCAATGAGGAAGCTCAGGAGGAAAATCTGACCGCCTAG

Protein sequence

MAVGISESRAKDVGSFVTRLRINKHGVRLRGSSITKVSASFPQSAPNTISVPSPISSLNASPVIPASNEYSTSSSSTAASSMNNVLLMHSDHSPMHSIESPNNNTVAHSPRSSTSTEDNVPLAHLLQRTKKHHSPTPTHNPVPDHDPETETVPTNIPDQPTPQSKTKTKNKRVSRKSGRRKIPPQVPFVPIDGVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAVMNLISKTHLLTTVSKLGPFYPKLIREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFINSALGITISPDLFASTPTPDELATKLTEANLIFLIGTSRQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLLSQYPNIFQPNEALGQSPSKLQLSYRLFQGCHVPNIEHTIRHPAAANLPHPDDLRSPNGGLLLPPSIANQTLQVLSSESRSLSGIIQDLTKRRRLIDSVVSTLRLILPANEEAQEENLTA
Homology
BLAST of PI0024363 vs. ExPASy TrEMBL
Match: A0A5D3B7L1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002300 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-60
Identity = 144/343 (41.98%), Postives = 205/343 (59.77%), Query Frame = 0

Query: 75  SSTAASSMNNVLLMHSDHSPMHSIES-PNNNTVAHSPRSSTSTEDNV-PLAHLLQRTKKH 134
           SS   S + ++  +   H+ + +  S P   T A S  +    +D V P+A        +
Sbjct: 309 SSPIQSPIPDIAALFDSHAALPTASSIPERGTDARSEETPFDNDDGVEPVA-----PGDY 368

Query: 135 HSPTPTHNPVPDHDPETETVPTNIPDQPTPQSKTKTKNKR-VSRKSGRRKIPPQVPFVPI 194
           +   P  + V   DP  +  P+++P +  P  K   + +R ++ K+GR+KIP  +P VPI
Sbjct: 369 NDEVPVADTV---DPGAQQEPSSVPTELKPARKKGQQIRRNITTKAGRKKIPLNIPSVPI 428

Query: 195 DGVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAVMNLISKTHLLTTVSKLGPFYPK 254
           DG+SFH EEN+H+WKFVV RR+ADE  + D HHSC+++MNLI K  L  T+S + PFYP+
Sbjct: 429 DGISFHLEENIHRWKFVVQRRIADEVNISDKHHSCVSIMNLIEKARLSKTISDVYPFYPQ 488

Query: 255 LIREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFINSALGITISPDLFASTPTPDEL 314
           LIRE IVN+ +   DPSSPD+ T+H+RGF F I P  IN  +G  +S +   S+ + D L
Sbjct: 489 LIREFIVNLPTNVNDPSSPDYLTVHIRGFKFTISPTMINGFMGNVVSINFSPSSSSTDVL 548

Query: 315 ATKLTEANL-------IFLIGTSRQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLL 374
           A++L+   L       I  +  S +VD G F+ NQL RH+ SF +KLPI+LPRFFS LLL
Sbjct: 549 ASELSRVTLSSWPVNGIPAVVLSVKVDAGAFIYNQLLRHVGSFGVKLPIALPRFFSDLLL 608

Query: 375 SQYPNIFQPNEALGQSPSKLQLSYRLFQGCHVPNIEHTIRHPA 408
                +    +A G  P  L LSYRLFQG HVP+I+H + HP+
Sbjct: 609 HLNAVVLTTLDAPGPDPKTLTLSYRLFQGSHVPDIDHDV-HPS 642

BLAST of PI0024363 vs. ExPASy TrEMBL
Match: A0A5A7V603 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001610 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.0e-58
Identity = 143/384 (37.24%), Postives = 207/384 (53.91%), Query Frame = 0

Query: 144 DHDPETE--TVP----TNIPDQPT-----PQSKTKTKNKRVSRKSGRRKIPPQVPFVPID 203
           D+ P TE  TVP    T+I D  T     P     T+   +S K+GR+KIPP VPFVPID
Sbjct: 562 DYVPRTEEKTVPEATSTSIEDHSTFHAKHPSDHRSTEEPVISTKAGRQKIPPNVPFVPID 621

Query: 204 GVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAVMNLISKTHLLTTVSKLGPFYPKL 263
           GVSFH EE+ HKW +VV RR+ADE  ++D ++S  A+++LI    L+ TVSK+GPFYP+L
Sbjct: 622 GVSFHSEEDAHKWNYVVKRRIADEANIVDQYNSYPAILDLIRNVRLIRTVSKVGPFYPRL 681

Query: 264 IREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFINSALGITISPDLFASTPTPDELA 323
           +RE+IVN+ S F DPS+ ++  +H+RG  FN+ PE +N+ LG+++  D   S PTP+ LA
Sbjct: 682 MRELIVNLPSDFNDPSADEYQKVHIRGVYFNMSPELLNTYLGLSLPADYAVSYPTPERLA 741

Query: 324 TKLTEANL---------------------------------------------IFLIGTS 383
            +LT   +                                             ++L+GT 
Sbjct: 742 EELTGGTIPVWPVDGQLQVAYLTIKYSILHRIRISNWIPSTHAFTILTSLGHFVYLVGTG 801

Query: 384 RQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLLSQYPNIFQPNEALGQSPSKLQLS 443
            +V+   F+ N L RH+D+FA+ +PI  PR  S  LL+Q        + +G  P  + L 
Sbjct: 802 VKVNASEFIFNHLLRHVDTFAIHIPICFPRILSEFLLAQQSTNLTSLDTIGTGPRVIPLK 861

Query: 444 YRLFQGCHVPNI----EHTIRHPAAANLPHPDDLRSPNGGLLLPPSIANQTLQVLSSESR 468
             LFQG ++P+I    ++     + A   HP    + +  L L  S+ N  LQ L +ES 
Sbjct: 862 MHLFQGSYIPDIVVEFDNAPGGTSIAATTHP----TVSHPLTLSVSLVNLLLQALIAESC 921

BLAST of PI0024363 vs. ExPASy TrEMBL
Match: A0A1S3CND8 (uncharacterized protein LOC103502436 OS=Cucumis melo OX=3656 GN=LOC103502436 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.8e-56
Identity = 134/342 (39.18%), Postives = 189/342 (55.26%), Query Frame = 0

Query: 111 RSSTSTEDNVPLAHLLQRTKKHHSPTPTHNPV-PDHDPETETVPTNIPDQPTPQSKTKTK 170
           RS  +  DNV    L+     H+   P  + + P    +T +VPT   ++ + + K +  
Sbjct: 53  RSEETPLDNVDGVELVV-PSDHNDEVPVADTIDPSAQQQTPSVPT---ERKSSRKKGQQL 112

Query: 171 NKRVSRKSGRRKIPPQVPFVPIDGVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAV 230
            + ++ K+GR+KIP  +P VPI G+SFHHEENV +WKFVV RR+ADE  + + HHSC+++
Sbjct: 113 RRNITTKAGRKKIPLNIPSVPIYGISFHHEENVQRWKFVVQRRIADEVNISNKHHSCVSI 172

Query: 231 MNLISKTHLLTTVSKLGPFYPKLIREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFI 290
           +NLI K  L  T+S +G  YPKLIR+ IVN+S+ F DPSSPD+ T+H+RGF F I P  I
Sbjct: 173 INLIEKAGLSKTISNVGSIYPKLIRKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVI 232

Query: 291 NSALGITISPDLFASTPTPDELATKLTEANL----------------------------- 350
           N  LG  +S +   S+P+ D LA+ L+   L                             
Sbjct: 233 NGFLGNDVSINFSPSSPSTDVLASVLSGGALSLWLVDGIPAIALSVNYAILHKIGIANWF 292

Query: 351 ---------------IFLIGTSRQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLLS 408
                          ++ I    +VD G F+ NQL RH+ SF +KL I+LPRFFS LLL 
Sbjct: 293 PSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLH 352

BLAST of PI0024363 vs. ExPASy TrEMBL
Match: A0A5D3BB19 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00310 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.9e-56
Identity = 135/355 (38.03%), Postives = 191/355 (53.80%), Query Frame = 0

Query: 98  IESPNNNTVAHSPRSSTSTEDNVPLAHLLQRTKKHHSPTPTHNPV-PDHDPETETVPTNI 157
           ++ P   T A S  +     D V L         H+   P  + + P    +T +VPT  
Sbjct: 59  LDIPEGGTEARSEETPLDNVDGVELV----VPSDHNDEVPVADTIDPSAQQQTPSVPT-- 118

Query: 158 PDQPTPQSKTKTKNKRVSRKSGRRKIPPQVPFVPIDGVSFHHEENVHKWKFVVHRRLADE 217
            ++ + + K +   + ++ K+GR+KIP  +P VPI G+SFHHEENV +WKFVV RR+ADE
Sbjct: 119 -ERKSSRKKGQQLRRNITTKAGRKKIPLNIPSVPIYGISFHHEENVQRWKFVVQRRIADE 178

Query: 218 CEVLDDHHSCLAVMNLISKTHLLTTVSKLGPFYPKLIREMIVNISSTFKDPSSPDFHTIH 277
             + + HHSC++++NLI K  L  T+S +G  YPKLIR+ IVN+S+ F DPSSPD+ T+H
Sbjct: 179 VNISNKHHSCVSIINLIEKAGLSKTISNVGSIYPKLIRKFIVNLSADFNDPSSPDYQTVH 238

Query: 278 VRGFCFNIFPEFINSALGITISPDLFASTPTPDELATKLTEANL---------------- 337
           +RGF F I P  IN  LG  +S +   S+P+ D LA+ L+   L                
Sbjct: 239 IRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGALSLWLVDGIPAIALSVN 298

Query: 338 ----------------------------IFLIGTSRQVDFGTFVVNQLKRHIDSFALKLP 397
                                       ++ I    +VD G F+ NQL RH+ SF +KL 
Sbjct: 299 YAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLS 358

Query: 398 ISLPRFFSTLLLSQYPNIFQPNEALGQSPSKLQLSYRLFQGCHVPNIEHTIRHPA 408
           I+LPRFFS LLL  Y  +   ++A    P  L LSYRLFQ  HVP+I+H + HP+
Sbjct: 359 IALPRFFSDLLLHLYAAVLTTSDAPSPDPKTLSLSYRLFQDSHVPDIDHDV-HPS 405

BLAST of PI0024363 vs. ExPASy TrEMBL
Match: A0A1S3CJS2 (uncharacterized protein LOC103501750 OS=Cucumis melo OX=3656 GN=LOC103501750 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-55
Identity = 167/513 (32.55%), Postives = 250/513 (48.73%), Query Frame = 0

Query: 33  SITKVSASFPQSAPNTISVPSPISSLNASPVIPA-------SNEYSTSSSST-------- 92
           S  +VS+   +S P T+  P+P SS + +P IP        SN+    SSST        
Sbjct: 22  SQAEVSSRLSESMPETVDSPNPTSSSSHAPNIPETIVSDMDSNDLDDESSSTEGVFVPTP 81

Query: 93  AASSMNNVLLMHSDHSPMHSIESPNNNTVAHSPRSSTSTEDNVPLAHLLQRTKKHHSPTP 152
                +N+    S HSP   I SP +  +   P ++ +          L RT  ++    
Sbjct: 82  GIHHTSNIQPGPSIHSPF--IRSPISEPLPSKPNTAHAIVPGEVSIEPLVRTDVYNDEDE 141

Query: 153 THNPVPD-HDPETETVPTN----------IPDQPTPQSKTKTKNKRVSRKSGRRKIPPQV 212
            + P P  H  E   V  N          IP +  P  K   +N+R +  +GR+KIPP++
Sbjct: 142 LNPPNPKVHSEEFSDVADNNLTASPASYAIPVESQPAKKKSQQNRR-NITAGRKKIPPKI 201

Query: 213 PFVPIDGVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAVMNLISKTHLLTTVSKLG 272
             V IDG+SFHHEENV +WKF+V RRLAD   V   H SC+++MNLI    L  T+S +G
Sbjct: 202 SSVLIDGISFHHEENVQRWKFMVQRRLADGVNVSVKHQSCISIMNLIEMAGLSKTISNVG 261

Query: 273 PFYPKLIREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFINSALGITISPDLFASTP 332
           PFYP+LI++ IVN+   F DPSS D+ T+H+RGF F I    IN  LG  ++ D   S+P
Sbjct: 262 PFYPQLIKKFIVNLPDEFNDPSSSDYQTVHIRGFKFIISTAVINGFLGNFVALDCSLSSP 321

Query: 333 TPDELATKLTEANL--------------------------------------------IF 392
           + + LA  L+   L                                            ++
Sbjct: 322 SKEVLAFVLSGGTLSSWLVNGILVVALSVKYAILHKISIANWFPSSYASSVSAALGTFLY 381

Query: 393 LIGTSRQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLLSQYPNIFQPNEALGQSPS 452
            I    +VD G F+ N+L RH+  F +K+PI+LPRFFS++LL     +   ++ALG +P 
Sbjct: 382 RICNDDKVDTGAFIHNKLLRHVGLFGVKIPIALPRFFSSMLLHLNVVVITASDALGPNPK 441

Query: 453 KLQLSYRLFQGCHVPNIEHTIRHPAAANLPHPDDLRSPNGGLLLPPSIANQTLQVLSSES 476
            L LSYRLFQG HVP+I+  +     + +    D      G  +   +A++ +  L+ ES
Sbjct: 442 TLSLSYRLFQGSHVPDIDRDVHPSRGSGIFDSSDWDESADGFFVDRELASRIVNSLTVES 501

BLAST of PI0024363 vs. NCBI nr
Match: KAA0036856.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95920.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 244.2 bits (622), Expect = 2.3e-60
Identity = 144/343 (41.98%), Postives = 205/343 (59.77%), Query Frame = 0

Query: 75  SSTAASSMNNVLLMHSDHSPMHSIES-PNNNTVAHSPRSSTSTEDNV-PLAHLLQRTKKH 134
           SS   S + ++  +   H+ + +  S P   T A S  +    +D V P+A        +
Sbjct: 309 SSPIQSPIPDIAALFDSHAALPTASSIPERGTDARSEETPFDNDDGVEPVA-----PGDY 368

Query: 135 HSPTPTHNPVPDHDPETETVPTNIPDQPTPQSKTKTKNKR-VSRKSGRRKIPPQVPFVPI 194
           +   P  + V   DP  +  P+++P +  P  K   + +R ++ K+GR+KIP  +P VPI
Sbjct: 369 NDEVPVADTV---DPGAQQEPSSVPTELKPARKKGQQIRRNITTKAGRKKIPLNIPSVPI 428

Query: 195 DGVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAVMNLISKTHLLTTVSKLGPFYPK 254
           DG+SFH EEN+H+WKFVV RR+ADE  + D HHSC+++MNLI K  L  T+S + PFYP+
Sbjct: 429 DGISFHLEENIHRWKFVVQRRIADEVNISDKHHSCVSIMNLIEKARLSKTISDVYPFYPQ 488

Query: 255 LIREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFINSALGITISPDLFASTPTPDEL 314
           LIRE IVN+ +   DPSSPD+ T+H+RGF F I P  IN  +G  +S +   S+ + D L
Sbjct: 489 LIREFIVNLPTNVNDPSSPDYLTVHIRGFKFTISPTMINGFMGNVVSINFSPSSSSTDVL 548

Query: 315 ATKLTEANL-------IFLIGTSRQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLL 374
           A++L+   L       I  +  S +VD G F+ NQL RH+ SF +KLPI+LPRFFS LLL
Sbjct: 549 ASELSRVTLSSWPVNGIPAVVLSVKVDAGAFIYNQLLRHVGSFGVKLPIALPRFFSDLLL 608

Query: 375 SQYPNIFQPNEALGQSPSKLQLSYRLFQGCHVPNIEHTIRHPA 408
                +    +A G  P  L LSYRLFQG HVP+I+H + HP+
Sbjct: 609 HLNAVVLTTLDAPGPDPKTLTLSYRLFQGSHVPDIDHDV-HPS 642

BLAST of PI0024363 vs. NCBI nr
Match: KAA0063048.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 6.3e-58
Identity = 143/384 (37.24%), Postives = 207/384 (53.91%), Query Frame = 0

Query: 144 DHDPETE--TVP----TNIPDQPT-----PQSKTKTKNKRVSRKSGRRKIPPQVPFVPID 203
           D+ P TE  TVP    T+I D  T     P     T+   +S K+GR+KIPP VPFVPID
Sbjct: 562 DYVPRTEEKTVPEATSTSIEDHSTFHAKHPSDHRSTEEPVISTKAGRQKIPPNVPFVPID 621

Query: 204 GVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAVMNLISKTHLLTTVSKLGPFYPKL 263
           GVSFH EE+ HKW +VV RR+ADE  ++D ++S  A+++LI    L+ TVSK+GPFYP+L
Sbjct: 622 GVSFHSEEDAHKWNYVVKRRIADEANIVDQYNSYPAILDLIRNVRLIRTVSKVGPFYPRL 681

Query: 264 IREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFINSALGITISPDLFASTPTPDELA 323
           +RE+IVN+ S F DPS+ ++  +H+RG  FN+ PE +N+ LG+++  D   S PTP+ LA
Sbjct: 682 MRELIVNLPSDFNDPSADEYQKVHIRGVYFNMSPELLNTYLGLSLPADYAVSYPTPERLA 741

Query: 324 TKLTEANL---------------------------------------------IFLIGTS 383
            +LT   +                                             ++L+GT 
Sbjct: 742 EELTGGTIPVWPVDGQLQVAYLTIKYSILHRIRISNWIPSTHAFTILTSLGHFVYLVGTG 801

Query: 384 RQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLLSQYPNIFQPNEALGQSPSKLQLS 443
            +V+   F+ N L RH+D+FA+ +PI  PR  S  LL+Q        + +G  P  + L 
Sbjct: 802 VKVNASEFIFNHLLRHVDTFAIHIPICFPRILSEFLLAQQSTNLTSLDTIGTGPRVIPLK 861

Query: 444 YRLFQGCHVPNI----EHTIRHPAAANLPHPDDLRSPNGGLLLPPSIANQTLQVLSSESR 468
             LFQG ++P+I    ++     + A   HP    + +  L L  S+ N  LQ L +ES 
Sbjct: 862 MHLFQGSYIPDIVVEFDNAPGGTSIAATTHP----TVSHPLTLSVSLVNLLLQALIAESC 921

BLAST of PI0024363 vs. NCBI nr
Match: XP_008464590.1 (PREDICTED: uncharacterized protein LOC103502436 [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 5.9e-56
Identity = 134/342 (39.18%), Postives = 189/342 (55.26%), Query Frame = 0

Query: 111 RSSTSTEDNVPLAHLLQRTKKHHSPTPTHNPV-PDHDPETETVPTNIPDQPTPQSKTKTK 170
           RS  +  DNV    L+     H+   P  + + P    +T +VPT   ++ + + K +  
Sbjct: 53  RSEETPLDNVDGVELVV-PSDHNDEVPVADTIDPSAQQQTPSVPT---ERKSSRKKGQQL 112

Query: 171 NKRVSRKSGRRKIPPQVPFVPIDGVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAV 230
            + ++ K+GR+KIP  +P VPI G+SFHHEENV +WKFVV RR+ADE  + + HHSC+++
Sbjct: 113 RRNITTKAGRKKIPLNIPSVPIYGISFHHEENVQRWKFVVQRRIADEVNISNKHHSCVSI 172

Query: 231 MNLISKTHLLTTVSKLGPFYPKLIREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFI 290
           +NLI K  L  T+S +G  YPKLIR+ IVN+S+ F DPSSPD+ T+H+RGF F I P  I
Sbjct: 173 INLIEKAGLSKTISNVGSIYPKLIRKFIVNLSADFNDPSSPDYQTVHIRGFKFTISPTVI 232

Query: 291 NSALGITISPDLFASTPTPDELATKLTEANL----------------------------- 350
           N  LG  +S +   S+P+ D LA+ L+   L                             
Sbjct: 233 NGFLGNDVSINFSPSSPSTDVLASVLSGGALSLWLVDGIPAIALSVNYAILHKIGIANWF 292

Query: 351 ---------------IFLIGTSRQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLLS 408
                          ++ I    +VD G F+ NQL RH+ SF +KL I+LPRFFS LLL 
Sbjct: 293 PSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLSIALPRFFSDLLLH 352

BLAST of PI0024363 vs. NCBI nr
Match: TYJ96199.1 (uncharacterized protein E5676_scaffold261G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 228.8 bits (582), Expect = 1.0e-55
Identity = 135/355 (38.03%), Postives = 191/355 (53.80%), Query Frame = 0

Query: 98  IESPNNNTVAHSPRSSTSTEDNVPLAHLLQRTKKHHSPTPTHNPV-PDHDPETETVPTNI 157
           ++ P   T A S  +     D V L         H+   P  + + P    +T +VPT  
Sbjct: 59  LDIPEGGTEARSEETPLDNVDGVELV----VPSDHNDEVPVADTIDPSAQQQTPSVPT-- 118

Query: 158 PDQPTPQSKTKTKNKRVSRKSGRRKIPPQVPFVPIDGVSFHHEENVHKWKFVVHRRLADE 217
            ++ + + K +   + ++ K+GR+KIP  +P VPI G+SFHHEENV +WKFVV RR+ADE
Sbjct: 119 -ERKSSRKKGQQLRRNITTKAGRKKIPLNIPSVPIYGISFHHEENVQRWKFVVQRRIADE 178

Query: 218 CEVLDDHHSCLAVMNLISKTHLLTTVSKLGPFYPKLIREMIVNISSTFKDPSSPDFHTIH 277
             + + HHSC++++NLI K  L  T+S +G  YPKLIR+ IVN+S+ F DPSSPD+ T+H
Sbjct: 179 VNISNKHHSCVSIINLIEKAGLSKTISNVGSIYPKLIRKFIVNLSADFNDPSSPDYQTVH 238

Query: 278 VRGFCFNIFPEFINSALGITISPDLFASTPTPDELATKLTEANL---------------- 337
           +RGF F I P  IN  LG  +S +   S+P+ D LA+ L+   L                
Sbjct: 239 IRGFKFTISPTVINGFLGNDVSINFSPSSPSTDVLASVLSGGALSLWLVDGIPAIALSVN 298

Query: 338 ----------------------------IFLIGTSRQVDFGTFVVNQLKRHIDSFALKLP 397
                                       ++ I    +VD G F+ NQL RH+ SF +KL 
Sbjct: 299 YAILHKIGIANWFPSSHASSVSTALGTFLYCICNDDRVDAGAFIYNQLLRHVGSFGVKLS 358

Query: 398 ISLPRFFSTLLLSQYPNIFQPNEALGQSPSKLQLSYRLFQGCHVPNIEHTIRHPA 408
           I+LPRFFS LLL  Y  +   ++A    P  L LSYRLFQ  HVP+I+H + HP+
Sbjct: 359 IALPRFFSDLLLHLYAAVLTTSDAPSPDPKTLSLSYRLFQDSHVPDIDHDV-HPS 405

BLAST of PI0024363 vs. NCBI nr
Match: XP_008463658.1 (PREDICTED: uncharacterized protein LOC103501750 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 2.2e-55
Identity = 167/513 (32.55%), Postives = 250/513 (48.73%), Query Frame = 0

Query: 33  SITKVSASFPQSAPNTISVPSPISSLNASPVIPA-------SNEYSTSSSST-------- 92
           S  +VS+   +S P T+  P+P SS + +P IP        SN+    SSST        
Sbjct: 22  SQAEVSSRLSESMPETVDSPNPTSSSSHAPNIPETIVSDMDSNDLDDESSSTEGVFVPTP 81

Query: 93  AASSMNNVLLMHSDHSPMHSIESPNNNTVAHSPRSSTSTEDNVPLAHLLQRTKKHHSPTP 152
                +N+    S HSP   I SP +  +   P ++ +          L RT  ++    
Sbjct: 82  GIHHTSNIQPGPSIHSPF--IRSPISEPLPSKPNTAHAIVPGEVSIEPLVRTDVYNDEDE 141

Query: 153 THNPVPD-HDPETETVPTN----------IPDQPTPQSKTKTKNKRVSRKSGRRKIPPQV 212
            + P P  H  E   V  N          IP +  P  K   +N+R +  +GR+KIPP++
Sbjct: 142 LNPPNPKVHSEEFSDVADNNLTASPASYAIPVESQPAKKKSQQNRR-NITAGRKKIPPKI 201

Query: 213 PFVPIDGVSFHHEENVHKWKFVVHRRLADECEVLDDHHSCLAVMNLISKTHLLTTVSKLG 272
             V IDG+SFHHEENV +WKF+V RRLAD   V   H SC+++MNLI    L  T+S +G
Sbjct: 202 SSVLIDGISFHHEENVQRWKFMVQRRLADGVNVSVKHQSCISIMNLIEMAGLSKTISNVG 261

Query: 273 PFYPKLIREMIVNISSTFKDPSSPDFHTIHVRGFCFNIFPEFINSALGITISPDLFASTP 332
           PFYP+LI++ IVN+   F DPSS D+ T+H+RGF F I    IN  LG  ++ D   S+P
Sbjct: 262 PFYPQLIKKFIVNLPDEFNDPSSSDYQTVHIRGFKFIISTAVINGFLGNFVALDCSLSSP 321

Query: 333 TPDELATKLTEANL--------------------------------------------IF 392
           + + LA  L+   L                                            ++
Sbjct: 322 SKEVLAFVLSGGTLSSWLVNGILVVALSVKYAILHKISIANWFPSSYASSVSAALGTFLY 381

Query: 393 LIGTSRQVDFGTFVVNQLKRHIDSFALKLPISLPRFFSTLLLSQYPNIFQPNEALGQSPS 452
            I    +VD G F+ N+L RH+  F +K+PI+LPRFFS++LL     +   ++ALG +P 
Sbjct: 382 RICNDDKVDTGAFIHNKLLRHVGLFGVKIPIALPRFFSSMLLHLNVVVITASDALGPNPK 441

Query: 453 KLQLSYRLFQGCHVPNIEHTIRHPAAANLPHPDDLRSPNGGLLLPPSIANQTLQVLSSES 476
            L LSYRLFQG HVP+I+  +     + +    D      G  +   +A++ +  L+ ES
Sbjct: 442 TLSLSYRLFQGSHVPDIDRDVHPSRGSGIFDSSDWDESADGFFVDRELASRIVNSLTVES 501

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3B7L11.1e-6041.98Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G... [more]
A0A5A7V6033.0e-5837.24Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G... [more]
A0A1S3CND82.8e-5639.18uncharacterized protein LOC103502436 OS=Cucumis melo OX=3656 GN=LOC103502436 PE=... [more]
A0A5D3BB194.9e-5638.03Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CJS21.1e-5532.55uncharacterized protein LOC103501750 OS=Cucumis melo OX=3656 GN=LOC103501750 PE=... [more]
Match NameE-valueIdentityDescription
KAA0036856.12.3e-6041.98gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95920.1 gag-pol polyprotein [... [more]
KAA0063048.16.3e-5837.24gag-pol polyprotein [Cucumis melo var. makuwa][more]
XP_008464590.15.9e-5639.18PREDICTED: uncharacterized protein LOC103502436 [Cucumis melo][more]
TYJ96199.11.0e-5538.03uncharacterized protein E5676_scaffold261G00310 [Cucumis melo var. makuwa][more]
XP_008463658.12.2e-5532.55PREDICTED: uncharacterized protein LOC103501750 [Cucumis melo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..186

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0024363.1PI0024363.1mRNA