PI0024358 (gene) Melon (PI 482460) v1

Overview
NamePI0024358
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Locationchr03: 22184680 .. 22185991 (-)
RNA-Seq ExpressionPI0024358
SyntenyPI0024358
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCGTTGCCGAGGAGCGACGGTAAGTACTTTTAAACTCTTTTAGGTTTTAAAAATTTTCTTTTACTTAGTTTCTTGATTCTATATTCAATTCATAAAAAAAAAAAAAAAAGAGAGAGTTATCTTGCATATTCTTTTTCTCTCCCTTACTTTGCATGTCCCGCTCTTCTAATCCTCACTTAGAATTTTTTGAAGACCTTAATAGAGAAGTGCGTAGAATTAGGAGAGAAAGGAGAAAAGAAATTAATCAACCATTTCCTCAAGAGCCTACTTTAGAAAATCAAAACCTTGATAGACAAGCCATGAGCCAAGTTAGAGAGAAAACTCTTAGAGAACTTTCTGAATCTGATGAAGACCAAAGGCCCCTATGTATAGTAATTCCCCCAACAACTCAACCCTTCGAGCTAAAACCTGGACTAATCCACCTTTTACCAATTTATAAGGGTAGCTCAGGTGAAGACCCTCATAAACATCTTAAGGATTTCCATATGGTTTGTGACTCTATGAGACCCCACGAAGTTTCTGAAGAACAACTTAACCTTAGAGCCTTTCCATTTTCCTTAACCGATTCGGCCAAACGATGGCTTTATTACTTAGAACCAGGGTCTATCACAACTTGGGGAGGACTTAAAAAAAATTCTTAGAAAAATTCTTTCCCGCCTCTAGAGCAAATAACATTAGGAAAGAAATCAACGGAATTAGGCAAGCCTTTGGGGAGTCTTTGTCAGAATATTGGGAACGTTTCAAGGAGCTTTGCGCTAGTTTTCCCCATCATCACATTTCTGACCCCTCTTTAATACAGTATTTTTATTCTGGACTACTAACCACGTATAGAAATATAGTAGATGCTGCAGCAGGTGGTGCCCTAGCTGATAAAACCCCTACTGAAGCAAGAGAGCTAATTTCCCGGATGGCTGAAAATTCACAAAATTTTGGCAACAGAGCATCCGAGCTCGACAATTCCTTAACAAAGGAGGTAAGTGAACTTAAATCACAAATGTTAAATATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGTAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGAAAGAGGCAAATGTCATTAGGAAGTACGATTCTCATGGAAACACTTACAAGCCGGTTGGAGAGACAACCCTAACCTTAAATGGGGAAATGACACCCAACGACCCGAAAACAGACCATCGAAAGGCTTCCAAATGGTTATTTTTCAGCACTGCACAGCAACCAAGGCGAAAAAAATTCGGCACATCTGGAGGTTGA

mRNA sequence

ATGGCGCCGTTGCCGAGGAGCGACGGTGGAAATGTGAAAGTTGTAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGAAAGAGGCAAATGTCATTAGGAAGTACGATTCTCATGGAAACACTTACAAGCCGGTTGGAGAGACAACCCTAACCTTAAATGGGGAAATGACACCCAACGACCCGAAAACAGACCATCGAAAGGCTTCCAAATGGTTATTTTTCAGCACTGCACAGCAACCAAGGCGAAAAAAATTCGGCACATCTGGAGGTTGA

Coding sequence (CDS)

ATGGCGCCGTTGCCGAGGAGCGACGGTGGAAATGTGAAAGTTGTAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGAAAGAGGCAAATGTCATTAGGAAGTACGATTCTCATGGAAACACTTACAAGCCGGTTGGAGAGACAACCCTAACCTTAAATGGGGAAATGACACCCAACGACCCGAAAACAGACCATCGAAAGGCTTCCAAATGGTTATTTTTCAGCACTGCACAGCAACCAAGGCGAAAAAAATTCGGCACATCTGGAGGTTGA

Protein sequence

MAPLPRSDGGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTYKPVGETTLTLNGEMTPNDPKTDHRKASKWLFFSTAQQPRRKKFGTSGG
Homology
[Close]
BLAST of PI0024358 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.7e-11
Identity = 28/42 (66.67%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 9   GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY 51
           G  +KV KCGVCGL+GHPNDKCP+++++ N++RKYD HGNTY
Sbjct: 152 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTY 193

[Close]
BLAST of PI0024358 vs. ExPASy TrEMBL
Match: A0A5D3DFM6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19523G00450 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.8e-11
Identity = 27/39 (69.23%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 12  VKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY 51
           +KV KCGVCGL+GHPNDKCP+++++ N++RKYD HGNTY
Sbjct: 149 LKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTY 187

[Close]
BLAST of PI0024358 vs. ExPASy TrEMBL
Match: A0A5D3D815 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00050 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.8e-11
Identity = 28/42 (66.67%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 9   GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY 51
           G  +KV KCGVCGL+GHPNDKCP+++++ N++RKYD HGNTY
Sbjct: 67  GTPLKVTKCGVCGLVGHPNDKCPEVIEDINIVRKYDPHGNTY 108

[Close]
BLAST of PI0024358 vs. ExPASy TrEMBL
Match: A0A5D3BX36 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00060 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.3e-11
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 1  MAPLPRSDGGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY 51
          MA   +S G  +K+ KCGVCGL+GHPNDKCP+++ + N++R+Y+ HGNTY
Sbjct: 40 MAENSQSFGTPLKITKCGVCGLVGHPNDKCPEVIGDVNIVRRYEPHGNTY 89

[Close]
BLAST of PI0024358 vs. ExPASy TrEMBL
Match: A0A5A7V1C6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003360 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.2e-11
Identity = 27/42 (64.29%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 9   GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY 51
           G  +KV KCGVCGL+GHPNDKCP+++++ N++R+YD HGNTY
Sbjct: 166 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPHGNTY 207

[Close]
BLAST of PI0024358 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 7.6e-11
Identity = 28/42 (66.67%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 9   GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY 51
           G  +KV KCGVCGL+GHPNDKCP+++++ N++RKYD HGNTY
Sbjct: 152 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTY 193

[Close]
BLAST of PI0024358 vs. NCBI nr
Match: TYK19600.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 9.9e-11
Identity = 28/42 (66.67%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 9   GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY 51
           G  +KV KCGVCGL+GHPNDKCP+++++ N++RKYD HGNTY
Sbjct: 67  GTPLKVTKCGVCGLVGHPNDKCPEVIEDINIVRKYDPHGNTY 108

[Close]
BLAST of PI0024358 vs. NCBI nr
Match: KAA0058350.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK22497.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 9.9e-11
Identity = 27/39 (69.23%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 12  VKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY 51
           +KV KCGVCGL+GHPNDKCP+++++ N++RKYD HGNTY
Sbjct: 149 LKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTY 187

[Close]
BLAST of PI0024358 vs. NCBI nr
Match: KAA0056553.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK02709.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 1  MAPLPRSDGGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY 51
          MA   +S G  +K+ KCGVCGL+GHPNDKCP+++ + N++R+Y+ HGNTY
Sbjct: 40 MAENSQSFGTPLKITKCGVCGLVGHPNDKCPEVIGDVNIVRRYEPHGNTY 89

[Close]
BLAST of PI0024358 vs. NCBI nr
Match: KAA0062012.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 27/42 (64.29%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 9   GGNVKVVKCGVCGLIGHPNDKCPDLVKEANVIRKYDSHGNTY 51
           G  +KV KCGVCGL+GHPNDKCP+++++ N++R+YD HGNTY
Sbjct: 166 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPHGNTY 207

The following BLAST results are available for this feature:
BLAST of PI0024358 vs.
Match NameE-valueIdentityDescription
BLAST of PI0024358 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CRR83.7e-1166.67Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3DFM64.8e-1169.23Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3D8154.8e-1166.67Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3BX366.3e-1156.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7V1C68.2e-1164.29Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
BLAST of PI0024358 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047407.17.6e-1166.67retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... [more]
TYK19600.19.9e-1166.67retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0058350.19.9e-1169.23retrotransposon gag protein [Cucumis melo var. makuwa] >TYK22497.1 retrotranspos... [more]
KAA0056553.11.3e-1056.00retrotransposon gag protein [Cucumis melo var. makuwa] >TYK02709.1 retrotranspos... [more]
KAA0062012.11.7e-1064.29retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of PI0024358 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..66
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 4..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0024358.1PI0024358.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding