PI0024344 (gene) Melon (PI 482460) v1

Overview


Name	PI0024344
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol
Location	chr03: 15909575 .. 15910434 (-)
RNA-Seq Expression	PI0024344
Synteny	PI0024344

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATTAAGGATGGGCTTTGCTCTATCGCATGCCTCTACCAAATCATCAATCTCCACCAAAACAAAGCTGAAAGCAGACACCTCAAAACCAAGAAAGCTGGAAAAGGCAAACAAGAGGACGATGGAGTAGAGATTGAAGAAGAAGAAGAAAGGGAGAGTGCAATGCCAAGCCCACTAATTCACAAGAGGAAAGGCGAGCATGAGGCCTTTGGTTCAAAGAAGAAAGCAAAGAAACCGAAGGCCAAGGACTTCAGTGACCCTCTTCCTTTTTCGATAAGGACTTCGCTTGGCCCCTAAATGTCCAAAACCACCATCTCGCCCTCGCCTTCCAAAACCTTAAAAGCACTAAATACTTCCCATCCAAAAATGCCACCACCTCCTCCCATAATCCAAATTCCATCTCCCCAAAAATCCAAGTCACCAAGTCCTTTCCGCCAAATCCAAAATATCACTACTACCACTACTCCTCAGTGGCAAGAGGAAAATCCTTAATCTCTTGTCGCAGATCTACTTGGCCAAACCACCACCTCGTTAATTGAAGATCATGAATCCCAATTTAATCAAAGGATAGATGATTCGTCCAAGACCTCTGCGATCCACAAATCGAAATTGAAGAAACGTCAAGGAATCTAGAGAATGCATCCCTAGTTCCTGTTGGGCCGCGCGAAGAAGAAGTCTTGGAGGAGCCAGTTAATGACCCACTCCCCAAAGGAAAGGAAATCGCCTTTGAGAAAGCTGGTGAGATGCGTGCTCCCTCGCCGCCTAAGCAAACAGAAGATCAGCAAAGTGACGCGGTGAGCGAGAATGAAAATGATAATTACTACAAGTTCATTAGTGATAGATTGGGAAACCAATGA

mRNA sequence

ATGCCAATTAAGGATGGGCTTTGCTCTATCGCATGCCTCTACCAAATCATCAATCTCCACCAAAACAAAGCTGAAAGCAGACACCTCAAAACCAAGAAAGCTGGAAAAGGCAAACAAGAGGACGATGGAGTAGAGATTGAAGAAGAAGAAGAAAGGGAGAGTGCAATGCCAAGCCCACTAATTCACAAGAGGAAAGGCGAGCATGAGGCCTTTGGTTCAAAGAAGAAAGCAAAGAAACCGAAGGCCAAGGACTTCAACCTCTGCGATCCACAAATCGAAATTGAAGAAACGTCAAGGAATCTAGAGAATGCATCCCTAGTTCCTGTTGGGCCGCGCGAAGAAGAAGTCTTGGAGGAGCCAGTTAATGACCCACTCCCCAAAGGAAAGGAAATCGCCTTTGAGAAAGCTGGTGAGATGCGTGCTCCCTCGCCGCCTAAGCAAACAGAAGATCAGCAAAGTGACGCGGTGAGCGAGAATGAAAATGATAATTACTACAAGTTCATTAGTGATAGATTGGGAAACCAATGA

Coding sequence (CDS)

ATGCCAATTAAGGATGGGCTTTGCTCTATCGCATGCCTCTACCAAATCATCAATCTCCACCAAAACAAAGCTGAAAGCAGACACCTCAAAACCAAGAAAGCTGGAAAAGGCAAACAAGAGGACGATGGAGTAGAGATTGAAGAAGAAGAAGAAAGGGAGAGTGCAATGCCAAGCCCACTAATTCACAAGAGGAAAGGCGAGCATGAGGCCTTTGGTTCAAAGAAGAAAGCAAAGAAACCGAAGGCCAAGGACTTCAACCTCTGCGATCCACAAATCGAAATTGAAGAAACGTCAAGGAATCTAGAGAATGCATCCCTAGTTCCTGTTGGGCCGCGCGAAGAAGAAGTCTTGGAGGAGCCAGTTAATGACCCACTCCCCAAAGGAAAGGAAATCGCCTTTGAGAAAGCTGGTGAGATGCGTGCTCCCTCGCCGCCTAAGCAAACAGAAGATCAGCAAAGTGACGCGGTGAGCGAGAATGAAAATGATAATTACTACAAGTTCATTAGTGATAGATTGGGAAACCAATGA

Protein sequence

MPIKDGLCSIACLYQIINLHQNKAESRHLKTKKAGKGKQEDDGVEIEEEEERESAMPSPLIHKRKGEHEAFGSKKKAKKPKAKDFNLCDPQIEIEETSRNLENASLVPVGPREEEVLEEPVNDPLPKGKEIAFEKAGEMRAPSPPKQTEDQQSDAVSENENDNYYKFISDRLGNQ

Homology

[Close]

BLAST of PI0024344 vs. ExPASy TrEMBL
Match: A0A5D3C0C3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76994G00060 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.1e-13
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 3   IKDGLCSIACLYQIINLHQNKAESRHLKTKKAGKGKQEDDGVEIEEEEERESAMPSPLIH 62
           +KD +C+I  +  +INL++NKAE + LKTK+  K K EDD +EI+EEEERE    SPLI 
Sbjct: 72  VKDEICTITSVSHMINLNKNKAEDKCLKTKEIEKVK-EDDKMEIDEEEEREDETLSPLIR 131

Query: 63  KRKGEHEAFGSKKKAKKPKAKD 85
           K KGE++AFGS+K+ +KPKAKD
Sbjct: 132 KMKGENKAFGSRKRKRKPKAKD 152

[Close]

BLAST of PI0024344 vs. ExPASy TrEMBL
Match: A0A5D3D8Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00610 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-11
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 87  LCDPQIEIEETSRNLENASLVPVGPREEEVLEEPVNDPLPKGKEIAFEKAGEMRAPSPPK 146
           +CDP   IE+  +NLE+ SLVPVG   +EVLE+ V+DPL KGK I  + A E   PSPPK
Sbjct: 11  VCDPFTPIEDEIKNLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPK 70

Query: 147 QTEDQQSDAVSENENDNYYKFISDRLG 174
           +T  Q   A   +E D Y+KFI +  G
Sbjct: 71  ETSKQHDTAKESDEKDEYFKFIENNFG 97

[Close]

BLAST of PI0024344 vs. ExPASy TrEMBL
Match: A0A5A7T7V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001610 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 86  NLCDPQIEIEETSRNLENASLVPVGPREEEVLEEPVNDPLPKGKEIAFEKAGEMRAPSPP 145
           ++CDP   IE+  +NLE+ SLVPVG   +EVLE+ V+DPL KGK I  + A E   PSPP
Sbjct: 10  SVCDPFTPIEDEIKNLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPP 69

Query: 146 KQTEDQQSDAVSENENDNYYKFISDRLG 174
           K+T  Q   A   ++ D Y+KFI +  G
Sbjct: 70  KETSKQHDTAKESDDKDEYFKFIENNFG 97

[Close]

BLAST of PI0024344 vs. ExPASy TrEMBL
Match: A0A0A0LY93 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G676915 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-07
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 16 IINLHQNKAESRHLKTKKAGKGKQEDDGVEIEEEEERESAMPSPLIHKRKGEHEAFGSKK 75
          +INLH+NKA+++HLKTKK  K   E+  VEIE++EE E  M SPLI KRKG  E   S+K
Sbjct: 1  MINLHKNKAKNKHLKTKKTEK-VIENHEVEIEDDEEMEDEMQSPLICKRKGMEEVSRSRK 60

Query: 76 KAKKPKAKD 85
          K KK KAKD
Sbjct: 61 KKKKSKAKD 68

[Close]

BLAST of PI0024344 vs. ExPASy TrEMBL
Match: A0A5D3BSJ3 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16540G00050 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-07
Identity = 60/178 (33.71%), Postives = 87/178 (48.88%), Query Frame = 0


Query: 14  YQIINLHQNKAESRHLKTKKAGKGKQEDDGVEIEEEEERESAMPSPLIHKRKGEHEAFGS 73
           + +INL +NKA+ +  K KK  +GK E + VE EEEE R+S   +PL  K+KGE EA  S
Sbjct: 232 HPVINLRRNKAKDKCFKIKK--EGKVEVNKVEFEEEEGRKSETHTPLRRKKKGEEEASSS 291

Query: 74  K------------KKAKKPK--AKDF-----------------------------NLCDP 133
                        ++ + P+    DF                             +L DP
Sbjct: 292 PHQVQIITIPSSLRQEENPQTLVVDFLDPTTIPIPNLNDSPVDQGDDAFQDMFEDSLYDP 351

Query: 134 QIEIEETSRNLENASLVPVGPREEEVLEEPVNDPLPKGKEIAFEKAGEMRAPSPPKQT 149
              I +  ++  + +L PVG   +EVLE+ V+DPL KGK+I+ ++ GE R  S PKQT
Sbjct: 352 LTLIHKVFKDPVDVALSPVGSLNKEVLEKAVDDPLLKGKQISSKEVGEARPLSLPKQT 407

[Close]

BLAST of PI0024344 vs. NCBI nr
Match: KAA0058409.1 (hypothetical protein E6C27_scaffold409G001210 [Cucumis melo var. makuwa] >TYK04704.1 hypothetical protein E5676_scaffold76994G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 8.5e-13
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 3   IKDGLCSIACLYQIINLHQNKAESRHLKTKKAGKGKQEDDGVEIEEEEERESAMPSPLIH 62
           +KD +C+I  +  +INL++NKAE + LKTK+  K K EDD +EI+EEEERE    SPLI 
Sbjct: 72  VKDEICTITSVSHMINLNKNKAEDKCLKTKEIEKVK-EDDKMEIDEEEEREDETLSPLIR 131

Query: 63  KRKGEHEAFGSKKKAKKPKAKD 85
           K KGE++AFGS+K+ +KPKAKD
Sbjct: 132 KMKGENKAFGSRKRKRKPKAKD 152

[Close]

BLAST of PI0024344 vs. NCBI nr
Match: TYK19850.1 (hypothetical protein E5676_scaffold811G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-11
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 87  LCDPQIEIEETSRNLENASLVPVGPREEEVLEEPVNDPLPKGKEIAFEKAGEMRAPSPPK 146
           +CDP   IE+  +NLE+ SLVPVG   +EVLE+ V+DPL KGK I  + A E   PSPPK
Sbjct: 11  VCDPFTPIEDEIKNLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPK 70

Query: 147 QTEDQQSDAVSENENDNYYKFISDRLG 174
           +T  Q   A   +E D Y+KFI +  G
Sbjct: 71  ETSKQHDTAKESDEKDEYFKFIENNFG 97

[Close]

BLAST of PI0024344 vs. NCBI nr
Match: KAA0038296.1 (hypothetical protein E6C27_scaffold270G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 4.7e-11
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 86  NLCDPQIEIEETSRNLENASLVPVGPREEEVLEEPVNDPLPKGKEIAFEKAGEMRAPSPP 145
           ++CDP   IE+  +NLE+ SLVPVG   +EVLE+ V+DPL KGK I  + A E   PSPP
Sbjct: 10  SVCDPFTPIEDEIKNLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPP 69

Query: 146 KQTEDQQSDAVSENENDNYYKFISDRLG 174
           K+T  Q   A   ++ D Y+KFI +  G
Sbjct: 70  KETSKQHDTAKESDDKDEYFKFIENNFG 97

[Close]

BLAST of PI0024344 vs. NCBI nr
Match: KGN66753.1 (hypothetical protein Csa_007650 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-07
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 16 IINLHQNKAESRHLKTKKAGKGKQEDDGVEIEEEEERESAMPSPLIHKRKGEHEAFGSKK 75
          +INLH+NKA+++HLKTKK  K   E+  VEIE++EE E  M SPLI KRKG  E   S+K
Sbjct: 1  MINLHKNKAKNKHLKTKKTEK-VIENHEVEIEDDEEMEDEMQSPLICKRKGMEEVSRSRK 60

Query: 76 KAKKPKAKD 85
          K KK KAKD
Sbjct: 61 KKKKSKAKD 68

[Close]

BLAST of PI0024344 vs. NCBI nr
Match: KAA0053481.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK02124.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 9.1e-07
Identity = 60/178 (33.71%), Postives = 87/178 (48.88%), Query Frame = 0


Query: 14  YQIINLHQNKAESRHLKTKKAGKGKQEDDGVEIEEEEERESAMPSPLIHKRKGEHEAFGS 73
           + +INL +NKA+ +  K KK  +GK E + VE EEEE R+S   +PL  K+KGE EA  S
Sbjct: 232 HPVINLRRNKAKDKCFKIKK--EGKVEVNKVEFEEEEGRKSETHTPLRRKKKGEEEASSS 291

Query: 74  K------------KKAKKPK--AKDF-----------------------------NLCDP 133
                        ++ + P+    DF                             +L DP
Sbjct: 292 PHQVQIITIPSSLRQEENPQTLVVDFLDPTTIPIPNLNDSPVDQGDDAFQDMFEDSLYDP 351

Query: 134 QIEIEETSRNLENASLVPVGPREEEVLEEPVNDPLPKGKEIAFEKAGEMRAPSPPKQT 149
              I +  ++  + +L PVG   +EVLE+ V+DPL KGK+I+ ++ GE R  S PKQT
Sbjct: 352 LTLIHKVFKDPVDVALSPVGSLNKEVLEKAVDDPLLKGKQISSKEVGEARPLSLPKQT 407

The following BLAST results are available for this feature:

BLAST of PI0024344 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024344 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0C3	4.1e-13	57.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D8Q5	1.0e-11	49.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T7V1	2.3e-11	47.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LY93	2.0e-07	59.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G676915 PE=4 SV=1	[more]
A0A5D3BSJ3	4.4e-07	33.71	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16540G...	[more]

BLAST of PI0024344 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058409.1	8.5e-13	57.32	hypothetical protein E6C27_scaffold409G001210 [Cucumis melo var. makuwa] >TYK047...	[more]
TYK19850.1	2.1e-11	49.43	hypothetical protein E5676_scaffold811G00610 [Cucumis melo var. makuwa]	[more]
KAA0038296.1	4.7e-11	47.73	hypothetical protein E6C27_scaffold270G001610 [Cucumis melo var. makuwa]	[more]
KGN66753.1	4.1e-07	59.42	hypothetical protein Csa_007650 [Cucumis sativus]	[more]
KAA0053481.1	9.1e-07	33.71	protein MNN4-like [Cucumis melo var. makuwa] >TYK02124.1 protein MNN4-like [Cucu...	[more]

BLAST of PI0024344 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024344.1	PI0024344.1	mRNA