PI0024238 (gene) Melon (PI 482460) v1

Overview


Name	PI0024238
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr02: 8512559 .. 8513456 (+)
RNA-Seq Expression	PI0024238
Synteny	PI0024238

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAGAGCTCCTACAACCAGATTAAGCTGACACTGGACACAATGGGCAACAATAATGGAGAATGGGATGAAGATGATTTCGGCAATCGCCGAGGAGGACGAGGAAGAAGCGATGAAGGTATGGATAAGAACGCCGTGGTGGCGTTGCAGGAACAAATGACTGCGATGAACAATCTACTCAAATCTATGACAATATCGCAAGTCAATGCCTCAGGAGGCTCTGTGCACGCGACAAACCAAATTGATGATATGGGATGTGTGGGATGCGGCGGTCCTCATAATACTGACGCATGCCCATTCAACACTGAAACAGTCGCGTTCGTAAGGAACGACCCTTTCTCCACACTTACAACCCTGGTTGGAGGAACCATCCTAACTTTGGATGGGGAGGAATGGGTCAACAAAATCAAGGGCGACATGGTGGTTAAGGTGACCATCGCGGGGAAGCATCTGGCTCCCACACGAGGTACCAAAACAACAGACCCCAACATTCCCATCATCAACAACAACCCACGACCACTACTCCATCCACTTTTTCATCCATGGAAAACCTTCTTCGCGAATACATGCAGAAAAATGATGCCCTTCTGCAAAGTCAAGCTTCATTAATCTTCAATCGGGAGGTACAATTAGGGCAGCTAGCCAGTGATTTCTCCGGAAGACCACAGGGATCCCTCTCAAGTAATACAGAAATTCCAAATCAGGCGGGGGGATCTGGAAAAGAGAAGTGTCACGCGGTGACACTGCGCAGCGGAAGGAATTTGACCATCCGTGATTCTGACACTAAACGTAGCAACTCCACTTCTCATTCTACTACCAAGATCGGCAACTCAAGTAAAATTCCTAATCTTGTACATTTCTCTTTAACTGACAATGTTTCTTTCTCGCAGAATAA

mRNA sequence

ATGTTAAAGAGCTCCTACAACCAGATTAAGCTGACACTGGACACAATGGGCAACAATAATGGAGAATGGGATGAAGATGATTTCGGCAATCGCCGAGGAGGACGAGGAAGAAGCGATGAAGGTATGGATAAGAACGCCGTGGTGGCGTTGCAGGAACAAATGACTGCGATGAACAATCTACTCAAATCTATGACAATATCGCAAGTCAATGCCTCAGGAGGCTCTGTGCACGCGACAAACCAAATTGATGATATGGGATGTGTGGGATGCGGCGGTCCTCATAATACTGACGCATGCCCATTCAACACTGAAACAGTCGCGTTCAAAAATGATGCCCTTCTGCAAAGTCAAGCTTCATTAATCTTCAATCGGGAGGTACAATTAGGGCAGCTAGCCAGTGATTTCTCCGGAAGACCACAGGGATCCCTCTCAAGTAATACAGAAATTCCAAATCAGGCGGGGGGATCTGGAAAAGAGAAGTGTCACGCGGTGACACTGCGCAGCGGAAGGAATTTGACCATCCGTGATTCTGACACTAAACGTAGCAACTCCACTTCTCATTCTACTACCAAGATCGGCAACTCAAAATAA

Coding sequence (CDS)

ATGTTAAAGAGCTCCTACAACCAGATTAAGCTGACACTGGACACAATGGGCAACAATAATGGAGAATGGGATGAAGATGATTTCGGCAATCGCCGAGGAGGACGAGGAAGAAGCGATGAAGGTATGGATAAGAACGCCGTGGTGGCGTTGCAGGAACAAATGACTGCGATGAACAATCTACTCAAATCTATGACAATATCGCAAGTCAATGCCTCAGGAGGCTCTGTGCACGCGACAAACCAAATTGATGATATGGGATGTGTGGGATGCGGCGGTCCTCATAATACTGACGCATGCCCATTCAACACTGAAACAGTCGCGTTCAAAAATGATGCCCTTCTGCAAAGTCAAGCTTCATTAATCTTCAATCGGGAGGTACAATTAGGGCAGCTAGCCAGTGATTTCTCCGGAAGACCACAGGGATCCCTCTCAAGTAATACAGAAATTCCAAATCAGGCGGGGGGATCTGGAAAAGAGAAGTGTCACGCGGTGACACTGCGCAGCGGAAGGAATTTGACCATCCGTGATTCTGACACTAAACGTAGCAACTCCACTTCTCATTCTACTACCAAGATCGGCAACTCAAAATAA

Protein sequence

MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNTETVAFKNDALLQSQASLIFNREVQLGQLASDFSGRPQGSLSSNTEIPNQAGGSGKEKCHAVTLRSGRNLTIRDSDTKRSNSTSHSTTKIGNSK

Homology

[Close]

BLAST of PI0024238 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31
Identity = 94/212 (44.34%), Postives = 123/212 (58.02%), Query Frame = 0


Query: 1   MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNR------RGGRGRSDEGMDKNAVVALQEQM 60
           ML+SSYNQIK  LDTM +N+ EW ++ FG+R      +G RGR ++G+D + +VALQ Q+
Sbjct: 59  MLRSSYNQIKNMLDTMASNSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQV 118

Query: 61  TAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNTETVAF-KND-- 120
             M N+L+SM + QVN    SV    Q+++MGCVGC  PHNT+ACP NTE VA+ KND  
Sbjct: 119 IEM-NILQSMALLQVNVVRSSVQMVQQVNEMGCVGCRAPHNTNACPLNTEIVAYLKNDPT 178

Query: 121 ----------ALLQSQASLIFNREVQLGQLASDFSGRPQGSLSSNTEIPNQAGGSGKEKC 180
                       + SQAS I N E+QLGQL SDFS RP+ S  SNTE PNQ         
Sbjct: 179 PIHIMWGGETTQISSQASSIKNMELQLGQLTSDFSRRPKRSFPSNTETPNQERDPNNNNP 238

Query: 181 HAVTLRSGRNLTIRDSDTKRSNSTSHSTTKIG 194
           +          T ++   K SN  +    +IG
Sbjct: 239 N-----KEMESTWKEEQGKESNKVTSDAFRIG 264

[Close]

BLAST of PI0024238 vs. ExPASy TrEMBL
Match: A0A5D3D2S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00800 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-29
Identity = 88/220 (40.00%), Postives = 108/220 (49.09%), Query Frame = 0


Query: 1   MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNL 60
           ML+SSY QIK TLD + NN+ E  +DD   +   RGR+D GMD+N +VALQ Q+T M  L
Sbjct: 1   MLQSSYYQIKTTLDAITNNSQELRDDDLRLQHESRGRTDAGMDRNVIVALQGQVTKMKKL 60

Query: 61  LKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNTETVAF------------ 120
           L+SM +SQV+A G  V A  Q+D+M  VGCG PH TDAC  N E  A+            
Sbjct: 61  LQSMALSQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYNA 120

Query: 121 ------------------------------------------------KNDALLQSQASL 161
                                                           + DA +QSQ + 
Sbjct: 121 GNYRGEAPDHRQRHYDRPHYSAPQHQQATTNTPSSFSSMVALLRKYMQRKDAFMQSQTTS 180

[Close]

BLAST of PI0024238 vs. ExPASy TrEMBL
Match: A0A5D3CSC7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1610G00360 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-23
Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 4   SSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKS 63
           SSYNQI  TLD++  NN EWD+D F + RGGRG+++EG+D+N +V  Q QMTAMNNLL+ 
Sbjct: 25  SSYNQINETLDSIAINNEEWDDDGFDSHRGGRGKNEEGLDRNVMVVPQGQMTAMNNLLQL 84

Query: 64  MTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNTETVAF 109
           M   QVNA+  S  +  Q+D++GC+  G PH  DACP N E VA+
Sbjct: 85  MVFLQVNAASSSFQSVKQVDEIGCMRFGSPHKIDACPLNIEIVAY 129

[Close]

BLAST of PI0024238 vs. ExPASy TrEMBL
Match: A0A5A7TGS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00540 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 73/139 (52.52%), Postives = 85/139 (61.15%), Query Frame = 0


Query: 57  MNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNTETVAFKNDALLQS 116
           MN LL+S+ + QVN +G  + A  Q                            NDALLQS
Sbjct: 1   MNKLLRSLALPQVNGTGNFIQAMQQ---------------------------WNDALLQS 60

Query: 117 QASLIFNREVQLGQLASDFSGRPQGSLSSNTEIPNQAGGSGKEKCHAVTLRSGRNLTIRD 176
           QAS I N E+QLGQL S+ S RP+GSL SNTE PNQ GGSGKEKC  VTLRS RNLTIR+
Sbjct: 61  QASSIKNLELQLGQLFSNISRRPKGSLPSNTETPNQVGGSGKEKCQVVTLRSRRNLTIRE 112

Query: 177 SDTKRSNSTSHSTTKIGNS 196
              +R NSTS STTKIG++
Sbjct: 121 PKFERRNSTSTSTTKIGSA 112

[Close]

BLAST of PI0024238 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 1   MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNL 60
           ML+SSYNQIK TLD+M NN+ EWD+  FG+R   RGR+ EG+DK+ VV LQ QM AMNNL
Sbjct: 59  MLRSSYNQIKATLDSMSNNSQEWDDIGFGSRH--RGRTKEGLDKSVVVVLQGQMIAMNNL 118

Query: 61  LKSMTISQVNASGGSVHATNQID 84
           L+SMT+SQVNA+   +HA  Q++
Sbjct: 119 LQSMTLSQVNAANNYIHAVKQVN 139

[Close]

BLAST of PI0024238 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 4.5e-31
Identity = 94/212 (44.34%), Postives = 123/212 (58.02%), Query Frame = 0


Query: 1   MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNR------RGGRGRSDEGMDKNAVVALQEQM 60
           ML+SSYNQIK  LDTM +N+ EW ++ FG+R      +G RGR ++G+D + +VALQ Q+
Sbjct: 59  MLRSSYNQIKNMLDTMASNSQEWRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQV 118

Query: 61  TAMNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNTETVAF-KND-- 120
             M N+L+SM + QVN    SV    Q+++MGCVGC  PHNT+ACP NTE VA+ KND  
Sbjct: 119 IEM-NILQSMALLQVNVVRSSVQMVQQVNEMGCVGCRAPHNTNACPLNTEIVAYLKNDPT 178

Query: 121 ----------ALLQSQASLIFNREVQLGQLASDFSGRPQGSLSSNTEIPNQAGGSGKEKC 180
                       + SQAS I N E+QLGQL SDFS RP+ S  SNTE PNQ         
Sbjct: 179 PIHIMWGGETTQISSQASSIKNMELQLGQLTSDFSRRPKRSFPSNTETPNQERDPNNNNP 238

Query: 181 HAVTLRSGRNLTIRDSDTKRSNSTSHSTTKIG 194
           +          T ++   K SN  +    +IG
Sbjct: 239 N-----KEMESTWKEEQGKESNKVTSDAFRIG 264

[Close]

BLAST of PI0024238 vs. NCBI nr
Match: KAA0040852.1 (hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK17828.1 hypothetical protein E5676_scaffold306G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 5.5e-29
Identity = 88/220 (40.00%), Postives = 108/220 (49.09%), Query Frame = 0


Query: 1   MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNL 60
           ML+SSY QIK TLD + NN+ E  +DD   +   RGR+D GMD+N +VALQ Q+T M  L
Sbjct: 1   MLQSSYYQIKTTLDAITNNSQELRDDDLRLQHESRGRTDAGMDRNVIVALQGQVTKMKKL 60

Query: 61  LKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNTETVAF------------ 120
           L+SM +SQV+A G  V A  Q+D+M  VGCG PH TDAC  N E  A+            
Sbjct: 61  LQSMALSQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYNA 120

Query: 121 ------------------------------------------------KNDALLQSQASL 161
                                                           + DA +QSQ + 
Sbjct: 121 GNYRGEAPDHRQRHYDRPHYSAPQHQQATTNTPSSFSSMVALLRKYMQRKDAFMQSQTTS 180

[Close]

BLAST of PI0024238 vs. NCBI nr
Match: KAA0038192.1 (hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa] >TYK14793.1 hypothetical protein E5676_scaffold1610G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 4.5e-23
Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 4   SSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNLLKS 63
           SSYNQI  TLD++  NN EWD+D F + RGGRG+++EG+D+N +V  Q QMTAMNNLL+ 
Sbjct: 25  SSYNQINETLDSIAINNEEWDDDGFDSHRGGRGKNEEGLDRNVMVVPQGQMTAMNNLLQL 84

Query: 64  MTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNTETVAF 109
           M   QVNA+  S  +  Q+D++GC+  G PH  DACP N E VA+
Sbjct: 85  MVFLQVNAASSSFQSVKQVDEIGCMRFGSPHKIDACPLNIEIVAY 129

[Close]

BLAST of PI0024238 vs. NCBI nr
Match: KAA0041246.1 (uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK16045.1 uncharacterized protein E5676_scaffold32G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 3.8e-22
Identity = 73/139 (52.52%), Postives = 85/139 (61.15%), Query Frame = 0


Query: 57  MNNLLKSMTISQVNASGGSVHATNQIDDMGCVGCGGPHNTDACPFNTETVAFKNDALLQS 116
           MN LL+S+ + QVN +G  + A  Q                            NDALLQS
Sbjct: 1   MNKLLRSLALPQVNGTGNFIQAMQQ---------------------------WNDALLQS 60

Query: 117 QASLIFNREVQLGQLASDFSGRPQGSLSSNTEIPNQAGGSGKEKCHAVTLRSGRNLTIRD 176
           QAS I N E+QLGQL S+ S RP+GSL SNTE PNQ GGSGKEKC  VTLRS RNLTIR+
Sbjct: 61  QASSIKNLELQLGQLFSNISRRPKGSLPSNTETPNQVGGSGKEKCQVVTLRSRRNLTIRE 112

Query: 177 SDTKRSNSTSHSTTKIGNS 196
              +R NSTS STTKIG++
Sbjct: 121 PKFERRNSTSTSTTKIGSA 112

[Close]

BLAST of PI0024238 vs. NCBI nr
Match: KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 6.4e-17
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 1   MLKSSYNQIKLTLDTMGNNNGEWDEDDFGNRRGGRGRSDEGMDKNAVVALQEQMTAMNNL 60
           ML+SSYNQIK TLD+M NN+ EWD+  FG+R   RGR+ EG+DK+ VV LQ QM AMNNL
Sbjct: 59  MLRSSYNQIKATLDSMSNNSQEWDDIGFGSRH--RGRTKEGLDKSVVVVLQGQMIAMNNL 118

Query: 61  LKSMTISQVNASGGSVHATNQID 84
           L+SMT+SQVNA+   +HA  Q++
Sbjct: 119 LQSMTLSQVNAANNYIHAVKQVN 139

The following BLAST results are available for this feature:

BLAST of PI0024238 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024238 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CC26	2.2e-31	44.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D2S0	2.7e-29	40.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CSC7	2.2e-23	54.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TGS2	1.9e-22	52.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K6F9	3.1e-17	61.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1	[more]

BLAST of PI0024238 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048713.1	4.5e-31	44.34	hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916...	[more]
KAA0040852.1	5.5e-29	40.00	hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK1782...	[more]
KAA0038192.1	4.5e-23	54.29	hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa] >TYK1479...	[more]
KAA0041246.1	3.8e-22	52.52	uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK...	[more]
KGN44484.1	6.4e-17	61.45	hypothetical protein Csa_015918 [Cucumis sativus]	[more]

BLAST of PI0024238 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024238.1	PI0024238.1	mRNA