PI0024230 (gene) Melon (PI 482460) v1

Overview
NamePI0024230
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr10: 21522045 .. 21522633 (-)
RNA-Seq ExpressionPI0024230
SyntenyPI0024230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCATACTCTATAGTGTTCTAATTTTTGTTATTTTTGTCGATGGCTTTACATCATCCTCCTCTCCTCTTCTTTTTGTTCCTCGTTTTAGCTTTAGCTTCTTCTTCTACGATTATGGCAACGTCTAGAGCCATGTTCGCTATAGCACAAGCTCCAATCACGTCAGCTGAAGTACCTACTCTAATCATCGATGCAAAACATTCACCACCAACGGTATCTGAAGCTATGTTGGTTGCAGGATTTAGCTCACCAACTTCCATGCCTCCAAGTTTTGGTAGTTTTGTTGCTTTTGAAGTTCCTAGTGAAGTGAGTGCAAATCCACCACTACCTAATTGGGTTATTAGAAGTTGTAAACCTAAAGGTCGAATGAGGTATTCTGCTCCCAGCGATCGCAGGAATAGTGAACCTCTTGTCTCAATTGTATGTTCAAACATGTCATGAAAAACCAAACAAAACAAAATATTCACAAGTCTTTATACGTACTTATTCAATACTACCTGTTTTCTATTTGTACTTGTGTCAATTTTCTTAAACCGTGTTAATGTATAATGTAAAATTCAGTTACTATAGAAATATACTTTGATTAAATTA

mRNA sequence

CTCATACTCTATAGTGTTCTAATTTTTGTTATTTTTGTCGATGGCTTTACATCATCCTCCTCTCCTCTTCTTTTTGTTCCTCGTTTTAGCTTTAGCTTCTTCTTCTACGATTATGGCAACGTCTAGAGCCATGTTCGCTATAGCACAAGCTCCAATCACGTCAGCTGAAGTACCTACTCTAATCATCGATGCAAAACATTCACCACCAACGGTATCTGAAGCTATGTTGGTTGCAGGATTTAGCTCACCAACTTCCATGCCTCCAAGTTTTGGTAGTTTTGTTGCTTTTGAAGTTCCTAGTGAAGTGAGTGCAAATCCACCACTACCTAATTGGGTTATTAGAAGTTGTAAACCTAAAGGTCGAATGAGGTATTCTGCTCCCAGCGATCGCAGGAATAGTGAACCTCTTGTCTCAATTGTATGTTCAAACATGTCATGAAAAACCAAACAAAACAAAATATTCACAAGTCTTTATACGTACTTATTCAATACTACCTGTTTTCTATTTGTACTTGTGTCAATTTTCTTAAACCGTGTTAATGTATAATGTAAAATTCAGTTACTATAGAAATATACTTTGATTAAATTA

Coding sequence (CDS)

ATGGCTTTACATCATCCTCCTCTCCTCTTCTTTTTGTTCCTCGTTTTAGCTTTAGCTTCTTCTTCTACGATTATGGCAACGTCTAGAGCCATGTTCGCTATAGCACAAGCTCCAATCACGTCAGCTGAAGTACCTACTCTAATCATCGATGCAAAACATTCACCACCAACGGTATCTGAAGCTATGTTGGTTGCAGGATTTAGCTCACCAACTTCCATGCCTCCAAGTTTTGGTAGTTTTGTTGCTTTTGAAGTTCCTAGTGAAGTGAGTGCAAATCCACCACTACCTAATTGGGTTATTAGAAGTTGTAAACCTAAAGGTCGAATGAGGTATTCTGCTCCCAGCGATCGCAGGAATAGTGAACCTCTTGTCTCAATTGTATGTTCAAACATGTCATGA

Protein sequence

MALHHPPLLFFLFLVLALASSSTIMATSRAMFAIAQAPITSAEVPTLIIDAKHSPPTVSEAMLVAGFSSPTSMPPSFGSFVAFEVPSEVSANPPLPNWVIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS
Homology
BLAST of PI0024230 vs. ExPASy TrEMBL
Match: A0A5D3CFX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002500 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 8.1e-46
Identity = 108/135 (80.00%), Postives = 114/135 (84.44%), Query Frame = 0

Query: 1   MALHHPPLLFFLFLVLALASSSTIMATSRAMFAIAQAPITSAEVPTLIIDAK--HSPPTV 60
           MALH  PLLFFLFLVLALASSST MATSRAM  IA  P  S + PTLI+DAK   S P +
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  SEAMLVAGF-SSPTSMPPSFGSFVAFEVPSEVSANPPLPNWVIRSCKPKGRMRYSAPSDR 120
           SEA LVAGF SS TSMPPSFG FVAFEVPSEVSANPP P+W+IRSCKPKGRMRYSAPSDR
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

Query: 121 RNSEPLVSIVCSNMS 133
           RNSEPL+SIVCSNMS
Sbjct: 121 RNSEPLISIVCSNMS 135

BLAST of PI0024230 vs. ExPASy TrEMBL
Match: A0A0A0KRI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622650 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.1e-31
Identity = 86/112 (76.79%), Postives = 89/112 (79.46%), Query Frame = 0

Query: 25  MATSRAMFAIAQAPITSAEVPTLIIDAKHS-PPTVSEAMLVAGFSS--PTSMPPSFGSFV 84
           MATSRAM  I          PT  IDAK S PPTVSEA LVAGF S   TSMPPSFG FV
Sbjct: 1   MATSRAMLFIE---------PTPTIDAKPSPPPTVSEATLVAGFGSSLSTSMPPSFGDFV 60

Query: 85  AFEVPSEVS-ANPPLPNWVIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 133
           AFEVPSEVS ANPP+P+W+IRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS
Sbjct: 61  AFEVPSEVSTANPPMPDWMIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 103

BLAST of PI0024230 vs. NCBI nr
Match: TYK09256.1 (hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-45
Identity = 108/135 (80.00%), Postives = 114/135 (84.44%), Query Frame = 0

Query: 1   MALHHPPLLFFLFLVLALASSSTIMATSRAMFAIAQAPITSAEVPTLIIDAK--HSPPTV 60
           MALH  PLLFFLFLVLALASSST MATSRAM  IA  P  S + PTLI+DAK   S P +
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  SEAMLVAGF-SSPTSMPPSFGSFVAFEVPSEVSANPPLPNWVIRSCKPKGRMRYSAPSDR 120
           SEA LVAGF SS TSMPPSFG FVAFEVPSEVSANPP P+W+IRSCKPKGRMRYSAPSDR
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

Query: 121 RNSEPLVSIVCSNMS 133
           RNSEPL+SIVCSNMS
Sbjct: 121 RNSEPLISIVCSNMS 135

BLAST of PI0024230 vs. NCBI nr
Match: KAE8648853.1 (hypothetical protein Csa_008932 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.7e-27
Identity = 84/116 (72.41%), Postives = 87/116 (75.00%), Query Frame = 0

Query: 1   MALHHPPLLFFLFLVLALASSSTIMATSRAMFAIAQAPITSAEVPTLIIDAKHS-PPTVS 60
           MAL H PLLFF  LVLALASSST MATSRAM  I          PT  IDAK S PPTVS
Sbjct: 1   MALRHAPLLFFFLLVLALASSSTTMATSRAMLFIE---------PTPTIDAKPSPPPTVS 60

Query: 61  EAMLVAGFSS--PTSMPPSFGSFVAFEVPSEVS-ANPPLPNWVIRSCKPKGRMRYS 113
           EA LVAGF S   TSMPPSFG FVAFEVPSEVS ANPP+P+W+IRSCKPKGRMR S
Sbjct: 61  EATLVAGFGSSLSTSMPPSFGDFVAFEVPSEVSTANPPMPDWMIRSCKPKGRMRSS 107

BLAST of PI0024230 vs. NCBI nr
Match: KAG6573847.1 (hypothetical protein SDJN03_27734, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-17
Identity = 60/118 (50.85%), Postives = 74/118 (62.71%), Query Frame = 0

Query: 15  VLALASSSTIMATSRAMFAIAQAPITSAEVPTLIIDAKHSPPTVSEAMLVAGFSSPTSMP 74
           +L + SS   M ++ +   ++   I +    T   D + +P T  EA  V G  S   M 
Sbjct: 7   MLNVVSSDLAMISNSSPSTVSFPVIPTPSTSTTTFDGESTPSTY-EATTVVGSGSAIFMS 66

Query: 75  PSFGSFVAFEVPSEVSANPPLPNWVIRSCKPKGRMRYSAPSDRRNSEPLVSIVCSNMS 133
           P+   FVAFEVP+ + A PP+ N VIRSCKPKGRMRYSAPSDRRNS PLVSIVCSNMS
Sbjct: 67  PTSNDFVAFEVPNGMDAKPPMSNRVIRSCKPKGRMRYSAPSDRRNSLPLVSIVCSNMS 123

BLAST of PI0024230 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-06
Identity = 41/116 (35.34%), Postives = 57/116 (49.14%), Query Frame = 0

Query: 8   LLFFLFLVLALASSSTIMATSRAMFAIAQAPITSAEVPTLIIDAKHSPPTVSEAMLVAGF 67
           L    FL++ ++S STI+ATSR M A               +D K SPP           
Sbjct: 9   LTIIFFLLIVISSPSTIIATSRHMLA---------------LDTKESPP----------- 68

Query: 68  SSPTSMPPSFGSFVAFEVPSEVSANPPLPNWVIRSCKPKGRMRYSAPSDRRNSEPL 124
             P   PP+   F    +P+   A PP+P   +RSCKPKG +R+S+PS  RN+ P+
Sbjct: 69  QPPMDKPPTSNDFDTLSLPNGTKAMPPMPESAVRSCKPKGPVRWSSPSPIRNNLPI 98

BLAST of PI0024230 vs. NCBI nr
Match: KAE8649709.1 (hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothetical protein Csa_012458, partial [Cucumis sativus] >KGN55007.2 hypothetical protein Csa_012551, partial [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 3.8e-05
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 0

Query: 1   MALHHPPLLFFLFLVLALASSSTIMATSRAMFAIAQAPITSAEVPTLIIDAKHSPPTVSE 60
           MA  H  + F  F ++A++S S IMAT+R M  +AQ P T  E  + I + + S   V E
Sbjct: 1   MAFQHDVVFFTFFFLIAMSSPSKIMATTRGMLDLAQPPTTLEE--STIRNFRESIAEVPE 60

Query: 61  AMLVAGFSSPTSMPPSFGSFVAFEVPSEVSANPPLPNWVIRSCKPKGRMRYSAPSDRRN 120
           +      SS  S+PP+   F++F+ P+ + A  PLP  ++  CKPKG + +SAP+ + N
Sbjct: 61  S------SSSISLPPTSDEFISFD-PNGMGARAPLPASLL-DCKPKGPIAWSAPNPKHN 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CFX38.1e-4680.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KRI31.1e-3176.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622650 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
TYK09256.11.7e-4580.00hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa][more]
KAE8648853.12.7e-2772.41hypothetical protein Csa_008932 [Cucumis sativus][more]
KAG6573847.11.5e-1750.85hypothetical protein SDJN03_27734, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6595583.13.4e-0635.34hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8649709.13.8e-0536.97hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothe... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0024230.1PI0024230.1mRNA